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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056890 ID=TCONS_00056890|Name=TCONS_00056890|organism=Clytia hemisphaerica|type=transcript|length=2060bp
AAAGGAGAGTtgcaaccttgaaattttgaaatttatcgttgaaacaaacc
atttcaggatagaaacaaaaaaatccaaaatttgttgagttcccctttaa
cTGTATTCCCTAATCTCTTAAAAGTGTGAAATATTTGATGAGAATAAAGG
TGTCATAATTACTGCCACCAAATAATGACGAACAAAAGGAACGAGATGAG
ACAAttatatgaaaagaaaaaacaattttacaaaagGTCACACACTGTCG
TAAATTCCACGACTAAATTCTCTAAAATAAGATAGGAGCAAAGTGATGTG
TGAGTTGATGTTGGCTGCTCTGAAAAATCCACTCCGGAATGAAGAATTTG
TACTTTAATTTTNGTTGGCTGCTCTGAAAAATCCACTCCGGAATGaagaa
tttgtattttaatttGTGATTAGATGGGTAAAGCCAAAAGAAAGTTACTT
CCCtctaaaaatagttttgaagATGTTACGCCAGCCAAACATTCCAGAAC
ATCAAGTACAGATGGAGACGCAATGTTCAAAGAACAATGGCAAAACAGTG
ACGCAGTTTTAATAGTAGAAAACCAAGAACTACATGTCCATACTTCAATA
TTATCAATCGcttccaaatattttgaaaaaatgttcaaCGGAAACTTCAA
GGAAGCTGAAACGAGAAGAGTGACTTTGGAAGAAAAGAGTTATGATTTGG
TAGAACATATGCTGAGGTTGATCTATCCTGTCAAATGTGGTCTAAGTCCA
AAATCATTGCTTTGTAATGTCTGTATGTTTCATGCTGGAACTCCATCACC
TGGAGaaGGTCACTACATAATGCCAACAGAATCAAACAGCATTGAATGTC
AAGAGTGCGGCGTGAAATTCATTAAGAGAGatcATCATGAAAAACTAGTG
ATGGAACATTTACAAAAGCTGTATCAACTTTCTGAAGAATTCTTTATGGA
TACTATCACTGACAAAATAATAGAAGAAATCACTCGCCTAAGTAAAAATA
TTCAGGGCATTTCTCAAGCATTCTTTTTACTTGAAACTGCTGAAGTTCTC
GAATTGAATACTGTTAAAGAAGCATGTTTTGGGTACCTACGTAAAACATT
AAATTCCATGTCATTACTAAGAAGGTATTCGACTGGCATGAATTATTCAT
TAAACACAAGAATGCGATTGAAAGGTATGGTTTTAAAGAATTTGGTCAAA
ATGTTGAAACCTCAAAACAATAAGGAGAATTGTGCCGTTGAAGAGTGTTT
GGAAATTGCTGGATCGTTGTTGAACTTTGATGCTGCGAAAGAAATCGATG
GCACGTTTTTGAACACTGCTTTTTCTTCACCCACCTGAATAAATTTAAAA
GACTTACTTGGAATTTTTACAGTCGTCATGAACAATCTGAAATCTAATTC
CAGCTGAAATACTGAGAACCACGTTTATGATTGGTTTATGCACTATACGA
CAGCAAGATCACTACAATTGGCTTTATTTAATCTATTTCTCGAGGATCAT
CATTGGTATACATGGTACAAGCTTGGGATGGTAAAGTGGCAAGCCACGAT
TTATCCAAGTTCATTGAAGAAGTATTAAAATATGTTGTAAAAAGACATTG
AGTATTTTCACCGAAGGTACTCATTATGAGTGATTTCATTGGCTCTAAAA
AAAGACATTATCATTTTTGAAGGATATGTACAGCTTAAAACGATTTAGAT
GTATatttcagtttttatttttatttcttacccattttacatattttaca
GTAGTCCCCGCCACGTCACTTATACATTTTCCTTTCTTCCCAACCCCCCG
CTCCTTTAAAGAATTCTTGACTTTGATAAACATCCAGCCTTGTTTACCCC
CTGCCCCTCTGTACAGAGTGTCCGGTGATATGCTTTTTGAAACGAAATTT
TATCCTGTATgtactttttagtttttatcaacaatatttctttattttaa
tgGACATGGATGCTTTCTATAGACGTTTTTTacaagagcaaactatataa
gaacatcaggcttcgatggctaaattattaagaacaagttaagaacattt
taaggctttt Run BLAST on NCBI transcript from alignment at scaffold_284:1153486..1158258+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056890 ID=TCONS_00056890|Name=TCONS_00056890|organism=Clytia hemisphaerica|type=transcript|length=4773bp|location=Sequence derived from alignment at scaffold_284:1153486..1158258+ (Clytia hemisphaerica)
AAAGGAGAGTtgcaaccttgaaattttgaaatttatcgttgaaacaaacc
atttcaggatagaaacaaaaaaatccaaaatttgttgagttcccctttaa
cTGTATTCCCTAATCTCTTAAAAGTGTGAAATATTTGATGAGAATAAAGG
TGTCATAATTACTGCCACCAAATAATGACGAACAAAAGGAACGAGATGAG
ACAAttatatgaaaagaaaaaacaattttacaaaagGTCACACACTGTCG
TAAATTCCACGACTAAATTCTCTAAAATAAGATAGGAGCAAAGTGATGTG
TGAGTTGATGTTGGCTGCTCTGAAAAATCCACTCCGGAATGAAGAATTTG
TACTTTAATTTTNGTTGGCTGCTCTGAAAAATCCACTCCGGAATGaagaa
tttgtattttaatttGTGATTAGGTATGTAGGAACGATGATCATTTCAGT
ATCATATCAGTATGAGTTCTATGGCGAACACCCTATTCGCTATTCCTCTT
ATAGcatatctttttcaaaaatatttcattggGTCGAtgaaaattttggt
tgcttctttttcacaacaaaaaagttgttcatttAAGCATGAATTAAGTT
GAAATACGAGGTTTTTAAAGAGTTCCTAATTATGCAACTGAAAAATGAGC
TTCAACTGTAATTTAGTCAAGTTTGTTTTTATGAATTAACAATTTCACTT
GTAAAGATTATCTTATAGCAAGTTTCCTTGCTTAATGATGAAACATAGAT
GTTGTTTTATGGTGAGTCACGTAAACTATTTTTATTTGAATGCTTTTTAA
AGAAGAGAGAAATTGTTGATTATTTTCCATGTTTATCATTTTTCCTTGTC
TCTGTATCTTATTTGCGCACATATTACAAAAGAGCTTACATTTCTGGTCA
TTAATATTAATTTCCAGGGTGTTTTGTCTTTCTAGATATCCACTATAACT
GCATAAAGACTAATACGATACGCTGTGTTGTTGATATTAGATCTTAATTT
ACTGTTTGACCGATTTTAGTTTCTTAATTTTGAAACTAAATTCAATagta
ttttttttcgatttgtttttttctattcCCTGCTCTTTAACATcactaaa
aatttctttatctttaGATGGGTAAAGCCAAAAGAAAGTTACTTCCCtct
aaaaatagttttgaagATGTTACGCCAGCCAAACATTCCAGAACATCAAG
TACAGATGGAGACGCAATGTTCAAAGAACAATGGCAAAACAGTGACGCAG
TTTTAATAGTAGAAAACCAAGAACTACATGTCCATACTTCAATATTATCA
ATCGcttccaaatattttgaaaaaatgttcaaCGGAAACTTCAAGGAAGC
TGAAACGAGAAGAGTGACTTTGGAAGAAAAGAGTTATGATTTGGTAGAAC
ATATGCTGAGGTTGATCTATCCTGTCAAATGTGGTCTAAGTAAGAATCGA
AAATCTTTTGATTAAACTTTTTGTAGTATCTAGTGGTTTAAGAGCTAACC
AACTTTCAAGCATTTACACTTACAATGATGCTTAATTATTTTATATTAAC
GTGTTGAATTATCTTTATATGTTACGAGGTTATGCTTTGTATGCCGAGGT
TATcgttctacacgtttttttattagaacatctaaaatttttgaagcctt
cggatgttcttaactttttgagtttgaagtttaaaaaggttcctaacatg
ttcttatttcccgcatttttatgtatttttgctcattttcctaagaaatt
ggctgttttagagtcctcagctaagcttgttcttaacatttttgccatcg
aagccttatattcttatatagtttgttcttataaaaaacgtgtacagcgA
CTTGAGATTTTACTAGCTCATTAGACATTCGTTAATCAATACTTCGATCA
TCTGCTGGTTTGAGAGAGAAGGTAGTGTAGGttagtgaaggtagagagtc
tatatTATTCTGTAACGCCCTTTCTGGAAGTACTTCGGTTTCAAACACCT
CAGTCAATTGCGGTGCAAGTTTATGATCGAAACCCAACCTCGGTTTtcag
ctttttgattcttactgatagcgctagataatattctctggcgtaacgta
aaacgtaaataaagcctgggatacacggggacgaggtcgatcgaaacctt
cacacttcACACATACTTTCATTTGTTTGATACTTTTTTGTATGTGTCAT
TTTAGGTCCAAAATCATTGCTTTGTAATGTCTGTATGTTTCATGCTGGAA
CTCCATCACCTGGAGGTATTTATTGTAAATCAAACTTAATTTCTATATTC
TCTAAATAGCTTTGGGGGAGAGCGGAGGTTATAAAATGGTAGGAAATTGG
ACAGTATTTTTTTCTTGCATTACGCTTTTACATTTACGTCTATTTGGGAG
ACAAAATAGACATAACTATTCAAAACGGATAGCACACCAACAATATGGCA
GCAACTGAAGTACTTTTAGTTTATTATTGAATTTCTTCGTTTAactttat
atattatttttcatttttgtagaaGGTCACTACATAATGCCAACAGAATC
AAACAGCATTGAATGTCAAGAGTGCGGCGTGAAATTCATTAAGAGAGGTG
ACTTTTAAATTCAAGAATGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGATAGCGCACCAACAATA
TGGCAGCAACTGAAGTACTTTTAGTTTATTATTGAATTTCTTCGTTTAac
tttatatattatttttcatttttgtagaaGGTCACTACATAATGCCAACA
GAATCAAACAGCATTGAATGTCAAGAGTGCGGCGTGAAATTCATTAAGAG
AGGTGACTTTTAAATTCAAGAATGACCGTTGTTCCGGATTTCTTAGATTT
CACTTCTTTTTTTCACTTAGTAACCGAGATTTTAAGGAACCAGCTCTGAG
AATGGTGAAAAAATAAGCAGCTTGCAACCTAGCCCTGAAACTGAGCATAA
ACTGGGAAATCAACcaaaaaatacctaaaaaacaattttatcatTTCGGC
ATTATTTGGCATTAAATTGTGATTTTAAATTTAGATACAaaatttgaggt
attttagacataaaatgatttaaaaagtcaaaaaatttcaagttgctATG
CTCTTTTGGCTCAAAATCCATAAGCAACTATTTGGTTAAAATCTGGAAAA
TCCAACCCGGAGCAAATCCAACCTTGAGCTGAAAATTAGGGTTGCTTATA
ATATAAAAAAGGACGGTACTTAACGTTGTATACCGCAAATAACCGGATAT
TAACAAAAATACAAGAACATATACTGCAAATCAAGTACATCCTTGACATG
TGTTTTATAGTCCAATAATTCCCAAATTgaactctttctttttcttatca
TGGGTTCTGTGGAAGCAATTAGCGAAAACCTAGATAGGCCATCCTTATAT
GTGGTAATGTGTATGTCTGCTTTATTGGGCAATCTAAAACTTAACTGAAG
TCTCCTTGTTAGATAATTGACATATCCAGTCTAGTCTTTAAAGTGCTCAC
GGGCTGCTTAAACCAATATCAACgctgtttctttttattttagatcATCA
TGAAAAACTAGTGATGGAACATTTACAAAAGCTGTATCAACTTTCTGAAG
AATTCTTTATGGATACTATCACTGACAAAATAATAGAAGAAATCACTCGC
CTAAGTAAAAATATTCAGGGCATTTCTCAAGCATTCTTTTTACTTGAAAC
TGCTGAAGTTCTCGAATTGAATACTGTTAAAGAAGCATGTTTTGGGTACC
TACGTAAAACATTAAATTCCATGTCATTACTAAGAAGGTATTCGACTGGC
ATGAATTATTCATTAAACACAAGAATGCGATTGAAAGGTATGGTTTTAAA
GAATTTGGTCAAAATGTTGAAACCTCAAAACAATAAGGAGAATTGTGCCG
TTGAAGAGTGTTTGGAAATTGCTGGATCGTTGTTGAACTTTGATGCTGCG
AAAGAAATCGATGGCACGTTTTTGAACACTGCTTTTTCTTCACCCACCTG
AATAAATTTAAAAGACTTACTTGGAATTTTTACAGTCGTCATGAACAATC
TGAAATCTAATTCCAGCTGAAATACTGAGAACCACGTTTATGATTGGTTT
ATGCACTATACGACAGCAAGATCACTACAATTGGCTTTATTTAATCTATT
TCTCGAGGATCATCATTGGTATACATGGTACAAGCTTGGGATGGTAAAGT
GGCAAGCCACGATTTATCCAAGTTCATTGAAGAAGTATTAAAATATGTTG
TAAAAAGACATTGAGTATTTTCACCGAAGGTACTCATTATGAGTGATTTC
ATTGGCTCTAAAAAAAGACATTATCATTTTTGAAGGATATGTACAGCTTA
AAACGATTTAGATGTATatttcagtttttatttttatttcttacccattt
tacatattttacaGTAGTCCCCGCCACGTCACTTATACATTTTCCTTTCT
TCCCAACCCCCCGCTCCTTTAAAGAATTCTTGACTTTGATAAACATCCAG
CCTTGTTTACCCCCTGCCCCTCTGTACAGAGTGTCCGGTGATATGCTTTT
TGAAACGAAATTTTATCCTGTATgtactttttagtttttatcaacaatat
ttctttattttaatgGACATGGATGCTTTCTATAGACGTTTTTTacaaga
gcaaactatataagaacatcaggcttcgatggctaaattattaagaacaa
gttaagaacattttaaggctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056890-exon-scaffold_284-1491911889:1153486..1153908 | TCONS_00056890-exon-scaffold_284-1491911889:1153486..1153908 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1510915933:1153486..1153908 | TCONS_00056890-exon-scaffold_284-1510915933:1153486..1153908 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1575043694:1153486..1153908 | TCONS_00056890-exon-scaffold_284-1575043694:1153486..1153908 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1491911889:1154603..1154924 | TCONS_00056890-exon-scaffold_284-1491911889:1154603..1154924 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1510915933:1154603..1154924 | TCONS_00056890-exon-scaffold_284-1510915933:1154603..1154924 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1575043694:1154603..1154924 | TCONS_00056890-exon-scaffold_284-1575043694:1154603..1154924 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1491911889:1155691..1155750 | TCONS_00056890-exon-scaffold_284-1491911889:1155691..1155750 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1510915933:1155691..1155750 | TCONS_00056890-exon-scaffold_284-1510915933:1155691..1155750 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1575043694:1155691..1155750 | TCONS_00056890-exon-scaffold_284-1575043694:1155691..1155750 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1491911889:1156263..1156337 | TCONS_00056890-exon-scaffold_284-1491911889:1156263..1156337 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1510915933:1156263..1156337 | TCONS_00056890-exon-scaffold_284-1510915933:1156263..1156337 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1575043694:1156263..1156337 | TCONS_00056890-exon-scaffold_284-1575043694:1156263..1156337 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1491911889:1157079..1158258 | TCONS_00056890-exon-scaffold_284-1491911889:1157079..1158258 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1510915933:1157079..1158258 | TCONS_00056890-exon-scaffold_284-1510915933:1157079..1158258 | Clytia hemisphaerica | exon |
| TCONS_00056890-exon-scaffold_284-1575043694:1157079..1158258 | TCONS_00056890-exon-scaffold_284-1575043694:1157079..1158258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1153486..1158258 + |
Blast
The following BLAST results are available for this feature:
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