TCONS_00056880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056880
Unique NameTCONS_00056880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056880 ID=TCONS_00056880|Name=TCONS_00056880|organism=Clytia hemisphaerica|type=transcript|length=1518bp
AATTCTAAtgaatttatgcaaataaatatatagaaattttgagacagact
tttacagaaaaatatttaactggttaagtatttttaaaaaaattctgaaa
tgaaTTTATGAATTCCCTCTGCACATTCTCTCAATGGATGCTCAACTACA
AAATATGGTATGACAAAGATGTAAATTTGGCTGAGGGATGTTTGATTGCT
TTAATAATTGTGTTAAATATACACAAACACCTCTGTCATCTTAGACAACC
AAAACATGGAAAAATATAGATAAAAAAGCTAGCTATAATAACAAATGTAG
GTCACAATTATTTTAAAATCATGCAATGTCAAGGAAAATATGACAGagaa
aatgatcaaattttcaaagaatataagcgatacaaaaagaaaaagccaTT
ACCTGACTTTTCCAAAGTTATTGATTTCCAGCAACCTGAAAAATATGGAG
CGCTTTTGAAGGAAATTACTGTTGCACCTCATCAAGCTACTTTTGATTAT
CACAAAATTGGATTGAAAAATCCTAAAGAATGGAAAGTTTATGAGCTTAC
ATCATGTCCAGGTTTTCTTGTAGTTCCAAACCCTTTTCTAAGTGCTGACT
CACAAAGTCATTGGGTAAAGAGAGCATTGACAGACTACACCAAAAAACCT
TTTCCTTCAAACCTTGATGTATTAATGACTCTTGAAAATGATAAGAAGAC
ACTCTGGGATATCAGTAAGGAAAAATCACCCACAGATAATTCATTTATCC
AGAAACTGAGGTGGGTACACATGGGATACCATTTTGATTACAATGTTGTC
GATTATAAAGCAAAACAGTACTTTGGTTTTCCTGATGACCTAGCTTGCTT
AACCAAGACCATTGCTTCTGTCTTTAAATTTCCAGACTATTATGCTGAAA
CTGGTATAATTAATTATTACCCTGAAGGTGCAAGTATGGGCGGACATACT
GATCATTATGAAGAAGAATTATGTCAACCGCTTATCAGTTATAGTTTTGG
TCAATCTGCTATATACCTCATTGGAGGCCCAACTAGAGATGTCAAACCAG
AGGCTATCTGGGTGCGTTCTGGTGATATTATGTTGATGACAGGGCCTTCA
CGTGTTGCCTTTCATGCTGTTCCTTGCATCATTACCAAACCATCTAAAAC
AACTCCAGAGAATATTGGAGATTGTCCTTTGGTACTAGAAAGTGATAACA
GCAATATAAATGTTAATAAAAAAGAGATTGATGGTTGTATTTGGAACAAT
GCAATGGCATCAAATGACTGGAAAGAATTTTCTGAATATATTTCTAATAC
CAGGATTAATATAAATATTCGACAAGTTCATAAATATAAGCTGGACAGTG
GTGACAAACAGGCTGATGAttaattattattaattattgtatttttgtaa
tGATTTTATATGTTATCCAAAATTTTATCTACAAAGATTTAATGGCCATT
CCTTTGTATTACTTCCTCTAACCTTTGTTCCTCTCAGTGTTTAAAGATGA
CCATAATAATCAACTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_284:962997..964514+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056880 ID=TCONS_00056880|Name=TCONS_00056880|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at scaffold_284:962997..964514+ (Clytia hemisphaerica)
AATTCTAAtgaatttatgcaaataaatatatagaaattttgagacagact
tttacagaaaaatatttaactggttaagtatttttaaaaaaattctgaaa
tgaaTTTATGAATTCCCTCTGCACATTCTCTCAATGGATGCTCAACTACA
AAATATGGTATGACAAAGATGTAAATTTGGCTGAGGGATGTTTGATTGCT
TTAATAATTGTGTTAAATATACACAAACACCTCTGTCATCTTAGACAACC
AAAACATGGAAAAATATAGATAAAAAAGCTAGCTATAATAACAAATGTAG
GTCACAATTATTTTAAAATCATGCAATGTCAAGGAAAATATGACAGagaa
aatgatcaaattttcaaagaatataagcgatacaaaaagaaaaagccaTT
ACCTGACTTTTCCAAAGTTATTGATTTCCAGCAACCTGAAAAATATGGAG
CGCTTTTGAAGGAAATTACTGTTGCACCTCATCAAGCTACTTTTGATTAT
CACAAAATTGGATTGAAAAATCCTAAAGAATGGAAAGTTTATGAGCTTAC
ATCATGTCCAGGTTTTCTTGTAGTTCCAAACCCTTTTCTAAGTGCTGACT
CACAAAGTCATTGGGTAAAGAGAGCATTGACAGACTACACCAAAAAACCT
TTTCCTTCAAACCTTGATGTATTAATGACTCTTGAAAATGATAAGAAGAC
ACTCTGGGATATCAGTAAGGAAAAATCACCCACAGATAATTCATTTATCC
AGAAACTGAGGTGGGTACACATGGGATACCATTTTGATTACAATGTTGTC
GATTATAAAGCAAAACAGTACTTTGGTTTTCCTGATGACCTAGCTTGCTT
AACCAAGACCATTGCTTCTGTCTTTAAATTTCCAGACTATTATGCTGAAA
CTGGTATAATTAATTATTACCCTGAAGGTGCAAGTATGGGCGGACATACT
GATCATTATGAAGAAGAATTATGTCAACCGCTTATCAGTTATAGTTTTGG
TCAATCTGCTATATACCTCATTGGAGGCCCAACTAGAGATGTCAAACCAG
AGGCTATCTGGGTGCGTTCTGGTGATATTATGTTGATGACAGGGCCTTCA
CGTGTTGCCTTTCATGCTGTTCCTTGCATCATTACCAAACCATCTAAAAC
AACTCCAGAGAATATTGGAGATTGTCCTTTGGTACTAGAAAGTGATAACA
GCAATATAAATGTTAATAAAAAAGAGATTGATGGTTGTATTTGGAACAAT
GCAATGGCATCAAATGACTGGAAAGAATTTTCTGAATATATTTCTAATAC
CAGGATTAATATAAATATTCGACAAGTTCATAAATATAAGCTGGACAGTG
GTGACAAACAGGCTGATGAttaattattattaattattgtatttttgtaa
tGATTTTATATGTTATCCAAAATTTTATCTACAAAGATTTAATGGCCATT
CCTTTGTATTACTTCCTCTAACCTTTGTTCCTCTCAGTGTTTAAAGATGA
CCATAATAATCAACTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035835XLOC_035835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056880-exon-scaffold_284-1491911889:962997..964514TCONS_00056880-exon-scaffold_284-1491911889:962997..964514Clytia hemisphaericaexon
TCONS_00056880-exon-scaffold_284-1510915933:962997..964514TCONS_00056880-exon-scaffold_284-1510915933:962997..964514Clytia hemisphaericaexon
TCONS_00056880-exon-scaffold_284-1575043694:962997..964514TCONS_00056880-exon-scaffold_284-1575043694:962997..964514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:962997..964514 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7774	12.0103	5.47313	5.6417	1.83611	1.36446	1.31573	1.90044	1.2327	1.15706	1.01398	0.954926	0.972431	0.662166	0.915172	0.93998	1.53644	1.04355	0.793773	0.692797	3.30314	2.44413	10.891	8.8032	0.397499	0.72316	2.18816	1.60405	3.98238	4.7809
Blast
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BLAST of TCONS_00056880 vs. Swiss-Prot (Human)
Match: ALKB1 (Nucleic acid dioxygenase ALKBH1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.865e-57
Identity = 110/283 (38.87%), Postives = 165/283 (58.30%), Query Frame = 3 
Query:  501 HKIGLKNPKEWKVYELTSCPGFLVVPNPFLSADSQSHWVKRALTDYTKKPFPSNLDVLMTLENDKKTLWDISKE----KSPTDN---SFIQKLRWVHMGYHFDYNVVDYKAKQYFGFPDDLACLTKTIASVFKFPDYYAETGIINYYPEGASMGGHTDHYEEELCQPLISYSFGQSAIYLIGGPTRDVKPEAIWVRSGDIMLMTGPSRVAFHAVPCIITKPSKTTPENIGDCPLVLESDNSNINVNKKEIDGCIWNNAMASNDWKEFSEYISNTRININIRQV 1328
            ++ GL+   +W+ Y L   PGF+ +PNPFL    Q HWVK+ L  Y++KP   NLD  M+ E + + LW+ SKE    K  T     S ++KLRWV +GYH++++   Y A  Y  FP DL  L++ +A+   F D+ AE GI+NYY   +++G H D  E +  +PL+S+SFGQSAI+L+GG  RD  P A+++ SGDIM+M+G SR+  HAVP ++       PE  G  P  LE+    +      ++ C      +  DW+  + Y+   R+N+ +RQV
Sbjct:   78 YRAGLQPVSKWQAYGLKGYPGFIFIPNPFLPG-YQWHWVKQCLKLYSQKPNVCNLDKHMSKE-ETQDLWEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSADHYTPFPSDLGFLSEQVAAACGFEDFRAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSGDIMIMSGFSRLLNHAVPRVL-----PNPEGEG-LPHCLEAPLPAVLPRDSMVEPC------SMEDWQVCASYLKTARVNMTVRQV 346
The following BLAST results are available for this feature:
BLAST of TCONS_00056880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALKB12.865e-5738.87Nucleic acid dioxygenase ALKBH1 OS=Homo sapiens GN... [more]
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