XLOC_035835 (gene) - C. hemisphaerica

Overview
NameXLOC_035835
Unique NameXLOC_035835
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_284:954727..964514+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035835 ID=XLOC_035835|Name=XLOC_035835|organism=Clytia hemisphaerica|type=gene|length=9788bp|location=Sequence derived from alignment at scaffold_284:954727..964514+ (Clytia hemisphaerica)
ttcgtaaaagcgaaGAAAACACTAAAGACTGGTACATTACAGATGGATAC
AGATATATTACTTTAATAATATTAAAAGAATCTCAAAATTGGTCATTTTC
CTAGTGGTACTTTCCAGTAGGTTGGATGGATCCTGTTTTTAAAAAACtgc
taccgtgagtggtcctaaatccaatgacagtctgggaaatcctctcaatt
gcacgcttatgttccgaggccgtaagcgcgcaattgcaccgttatcaaaa
tggcagaatttttaagcttgtaattacacgcttatcgaaattgttctgaa
acgggcggtaagcAGTAAGCGTAGAGCTTaagtgaaagagtttttatgat
aagttgattatgtgtatttgcctgggtttccaaagttcagaaagtctgtc
aacaagggttcacacacagactgtttataacattctgtgtcagactaatc
tacctgcaccaagctctataattttagaactttgtgaggtgaggtatttt
ttattttttctaaaattatgagcttggattcccaggctacagTAAGCGTG
GCAATTGCACCCTTTCTTTATTATTCTGACACGCAAAATTCCTTCcaaaa
gctctgttgaatttcaaaagcctagggcagttttactcaaaatttactca
aaatttatcgtagaagaagattccgtaaaaatggattgcccgttaaacca
tgccttcgcccgaattagagaattctgagcCCCATGAAATCCCTcagcaa
tttcaaccggggcgggagcgggcgtaaattataaccatgcgcttacgccc
tcggaacataagcgtgcaattgagaggatttcccagactggatgacagcc
ctgcctaaatccgatggggtatttcaaagatacaaactaaataaaaacaa
actttttgctgtgacgcaatgaagataccaaagtgtcaactaaactgaga
gatttgatacactgaaccaattgaaccaaaatatATATTAATTGCTTCTT
AAACAAAACATAATTCTTTATTACAAAATTATTAACGTTTTAAAATTgag
caacggattcagaataatagaggtaattatattatttttaccACTCGCac
ttttttttatcacattaattgacatcttgacattttagtcatcttgttag
atgttttgtttggagagttcttgcaatatagtttattgttcaacttggag
agggaatgtttgtaaacataagaatttttcttcatagcagttatttgggg
ggtcggatttaggcagggctgtcagatttaggaccactcacggtatgcTT
TACTgtatagtcatctggggtaattacgggacagtTAAAATTAAGGGGTA
AATACGGGACACCCCTAAAAATGGTGCTATTATTATAAATTTGGATTCAG
ATGGAGAGGATTTTGGAGATAGTCATTCTAGCTGCTAGAAAAATGTCTAG
TTAGATTATTCTAacatatacttttgatgatttaacaaaagtttcacatg
tcaccataaaaatcaattttcgtagTTTAAGAAGGAACTTTTCATGCTTT
AGTGTCAGGAAGAACTGCAATCACTTTGATTATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGTATTTATGGGa
cacctttaaaataatttttaggagcatctactaaatttcaaggaaaagta
aTAAATCTTGTGTAAAGGTCATActctgataaatgaaaaatcaaaaaatt
ggaTCTCTAGGATTAATACTTTTAGAGTAATGCCCAAATATGTCAAAatc
gtcccgtaattaccccagatgactatacatatttttagaatttgtgAACT
TTGTTCTCAGTTTGTTTTacaatgggctattccaaaaaaaaattatacag
ggATATAGCTAGCTAGGTAGCCCCCTGGATAAACAGTTGTGAACGTAAAA
TTTAGTGTTTTAGACCTCTGGGtcaccaatagaccttttttcaaagaggc
caccctgttgaataattatgtagtccagcagaaaaacaatgataaaacca
tgcataattattacaatatgcatgatacagtaattatgcatggctctatc
attgtttttatggctcgactacataattattctcaacaggacgtcctctt
tgaaaaaaggtctataagttgtgttcgcgtcatTCCCAGCCCTAAATTGT
GAGTTGGTCttaaatcatcaaaaaaatgcGCTCTGAATATAAGTGATCAA
GCGGTGCTAAAATCATTGGAAAAATGCGCTCTGAGCATATTGTTCAGGCG
GAAAAAATCATTGAGTGCGTGAGAGAGTGAGCTGTAATGTGATTATTTTG
CATATCACAACTGCGCATAAAGCAGTTGCGCAGCACTTTTTAAcgcaaaa
aatctttgaaaaattgcggataacaatcttaaaaacactCGATAATCAAA
ACGCTGCCTGGCTATGCTGAATCtacaaaattctttgaataataTTGCTa
aaaatctgacaaattttccGACTTTCCGACTAGAAAAGGGTCAgattttt
aagatagaaagtGAGTCTGTCAGAggacgcgaacacaacttatttgtGAC
CATGACCTTATTCTTTGACAAATAAAAAAGGGCCTGGAAAAAAACAACTA
TTGATGACATTTGAGGAGCCCTAATCAGCTTGGAAATTTAGATATATGCT
GAAACCCCTCAGAAAATCTCAAAACCCctgaaaaagtttgtcaatatata
cccctgtatggtttaaaaatggcaGAGTATAGACCAAAAActccttttta
tcaaaattacgGGATTTGTTTTTCGGCCTGGTgaatttactttcgttttc
agtggtttcacttttgatttcaagccaacatcttagaaACGGAGTGCTtt
cccatagttacaggggtttgtgcaaagaatcaaacttttaatgttttcca
aatccccttttcgattaaacaaataaaaaataaaacttttctatctttca
cttttttgcaccaattcttcaaaatgaaaatatttaagatttaaagttct
tcttttattcaatgagtTTTTATGGTATATACTTTATTGCTGACcatcta
actcttgcatcaattcccgctttcttcagaaaattgaaaatgagaaaaaa
cctaagtcTTGATCACGGATTAAAACAAATATATAAAGTGTGAGATTTTA
TAGCTGCCCATTGTGCAAGGAACTGAGACTCAAGAGGCCACAGATGTCAA
AAATAAGGGCTGTGTGAAATGCGACAATTTCATTGGTGGAAAGTTGAAAA
ACAGCTGCAAAGGAGTGCCGGGAAGCAATCaatagaagagaccacttttg
tttttgatacagattttgatataaacttctctcaaggattacttgtcaat
gtgttgtgtcaacttgtcagcattgtattctTGTTAAGGGAAAGataaag
aggtaagactagcctagtttctaatcctgacaGTCTAAGCTtataaactc
ctatatcaggattagaaactaggctgcTAGTCTTATCTCTTTTAccttgt
caacaaagtgccgtaaaaaattattgaataaaagaacatcacttcttttt
caacaaattcaagggtttcaaggtcatttttgactaattttccaGGCTTT
CAAGGGTTTTTACCACATACTTTCAAGGGTTTCTAGGGTTTTTAGTCAAT
CTTTGctagttttaaagtttttcaatgAAATCTGTTGACAATAGcagaaa
ggttgaattttcaaCTCTCAAGGTTGAATCCTCCACTCCCCTTAAATGCA
TAAAATACCCCTAAGACGTTTTCTTTAACAAAATCATTAAAACCATGAAA
TCTTTCAGACAAATCAGTCTTTTCAATCCCCTTGGAGTCTCAGAGGCTTC
AAAAGTATGTTTTCTCATTTAATTCACTGATGTTTGTATCCCacagaaat
attttggaaagttaaaatggctgaaaatggccACAAAATTTGGCATTTGA
AGGGTTTCAAGGGTATAAATCTTGCACCTCAAGGGTCCCCAAAATAATAT
TGTTGAATAATAGGGCAGGAAAAAaatcaagggtgtttcaaggaATTCAA
GGGTCGCTGGCAtggcgtcctccagctttttggtcccccctaataatatg
agctaaaatcccccatctggccttcccctcacctgtctttaaaatttgtt
ctccccccaattgggaaatccccctagccaaattgtataagggttgcgaa
gtgatgatccagactcacctcaattcgcaagctactatagcaaaaaaaag
actctcaaaatcattagaaagacaggctcataagcctgaatgcccaaaca
caccaggaaggtctgtatttatcctattactcccccactaggtagaggac
tgaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggactgaatataccccct
attcgcctttctcccccatcaagcttgaaattttcacttcccccctggca
ccaaaatctgattcccccccatcttcctggggggatGATCCCATGGCTGG
CCACCATGTTCATACAAAACAACAGCCCCCACCCCCACCCCCACTTGTGA
AAATGCAAATACCCCCAAACATTTCAGGTACCCCCTAAATTTAAGAAATC
TTCCAGGTACCTGGCTTTTTTAGCACTTTTTTTTTGAGGTACCCCCTAAT
TTCTGGGGGGTGGACCCAGGTGGACCCTATGCGTAATTTGCTCCTTtgga
aagtcttttttaaatttcaaccaataagattgcTGTGTATGATGAGGGTT
AACCACTAGTTCTAATTTTTGGCGCTAATGGCTTTTCGGCATCTTGGAAA
ATGAGTAGTCATATAACTTTATTTGGTTCAATCGTTGATTCTAAGggttg
aattttttcttatcttgAGTTCTCAAacgaaagcgggaatttgattcTTT
GAAATAGTAACGCACTATTTCAAAGAATcctttctgattggatgaaagca
CTTTACCTTCATTTGATTGGATGCTTCTTTTTAAACAATGGTATAGCAAT
TTTTTGATTGGAAAAATTAAAGCAATCGATTTCGCTGTGATTGGATAGTA
AAACATTTTGGCGCTTTCACAAGCGTTTGcgattgaacaaaataaaacaa
tctaaatatttcttttccaggggtgaattttgagtttttattttatttct
tcatGTTTGCCAATCCCGGGAGTCTTCATGTATATACCACAGGAAAACTC
ATGAAACCCGCCAATCTAATTTTGGGTTTGGCAAATCCCCAAGATTGGCA
AACAATCATTTTTTCCCACTTATGGTTTTTCTCATTGGtcttttattggt
ttcttttgttgatttcttgCATCATCATTGACTTGCTAGTCATTTCTTGA
AATGGAAAGACACGGTATTTACCAAGCTGCAGGACATTTTTGTTCCAAAC
TAGCGCTTATTAAtatttgggaaaatatttttgaaagttactttttttgc
cctaattctaCTGCATTACATTAgcttccttttcaaaaattttccaccca
ggacatttttattccaaccccccctcgcttattaagttttgagaattaGG
TATATACCTGAGATTGTTATCTTGAGTTAtagctaaagtctgtctcaaaa
gtatgtggacattttagtttttgagcattttctcaGTTATCAGTCATTCT
ATATTAGaaaattatgttaattattATGTTAATTAATTTCTAAGTTAAAA
ATACTTTGccagtcaaatatttttctgttaaagtctgtctcaaaatttct
atatatttatttgcataaattcattagaattactttcgcaaaaagtaatt
aaaaatataataattacTTTTCCAAATCTATGTGGACACTttagtttttg
agcattttctcaGCATCCATCCATGCTATATTAGAAAGCTAACAtcggaa
agatatttccaacgAGAACAATGAAATAgataaaacatttttgaaaaatt
gaaaaatgaagaagaagaatgaGAAGAATGAAGATGGAAAAATTAATCTT
TTATTCTTTAGATTATTTTCCTTGGTCTCCACATAGTTTTGGAAAAGTAA
TTATTAtacgatggcccagaaggctcattATTGCTGCACGCGAGAACATG
ACTGTGCGCGAGAAATATGTTGTGCGAGCGAGAAAAGTATATTGTGCGCG
CGAGAAGTATGTTGTGCGCATGAGAAGTATATTATGCGCGCGAGAAGTAT
GTTGTGCGCACACAAGTTGGAAATTGtgtgcgagaaaaaaaatactgTGC
GCGCGAGCACAAAAATCAAAGTAGatgtttgattttattaattCCGCCCT
TTCCGCCCTCCCTCCTGTGATTAGAGTCTGGAATTTATGATTCAAGTCTG
TAGAATACATGCCCTCAAAACACATGTTTTTTGACTGATTTCAGCTTAAC
AAGGTTCTTCGGtaaaaggttttcaaccagaatGAATGATGAATATTTAG
TTTGCGAATATGAATGATGAATATATAGCCAATGATGAATATTTAGCTTG
GCAATCAATCATGGACCACAGCAACACAGGGAGTAAGGACCTTTCTcgca
attttatttcataatacTGCGCATGCGTAATTTTCAACCGGTAGTGGATA
TTTAATGGCTAGAACCAAGTCAAATAATCCGGGAGGGGTGGACTCACTTt
atcggtcggggttgtggaggGCCTAAACCATTTTTTTGATTAGACGAAAA
TGTGATGTTCTTTAGTGACGTATTGTGACGTTCTTTAATGACGTATTTGT
CGCTTATTGGGTCACtaccagttagggtcagggttggactcGAGAGTCAC
AACTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGTCACTTTAG
GGTCAATTGGACCCactgacaaaattgaaaaacttcgtTTTAGTAAGATT
TTAGATTGCTGCGAATAAGGTCCTTTCTTCCCCTCGCAATGACCACAAAA
CCGCaacaacttttaacattttgCGCGACTTTGTCTATCATTTTGGATAT
GATTGTTTATCTTTGTATACATTTTGAGGACCCGAATGAAATTAACAGCG
ACACGATTTCAGGACTGGAATCATTATTTTTGGAAGTTAAACTATATCTG
CTTTGCTAATGTATGTCTCCTTTGCTTTCGCACTAGACTATATTCTCTCG
CGCACGATAACATCTTCTCGCGCGCACAACATACATTTCGCACACACAAC
ATATTTCTCGCTCGCACAACATATTTCTCGCTCGCACAACATATTTCTCC
CGCGCACAACATATTTCTCGCTCGCACAGCATATTTCTCGCGCACAGTCA
TGTTCTCGCGCGCAGCAATaatgagccttctgggccatcgtaTTATTATG
TAATTGCTTTTTGCGAAAGTAATTCTAAtgaatttatgcaaataaatata
tagaaattttgagacagacttttacagaaaaatatttaactggttaagta
tttttaaaaaaattctgaaatgaaTTTATGAATTCCCTCTGCACATTCTC
TCAATGGATGCTCAACTACAAAATATGGTATGACAAAGATGTAAATTTGG
CTGAGGGATGTTTGATTGCTTTAATAATTGTGTTAAATATACACAAACAC
CTCTGTCATCTTAGACAACCAAAACATGGAAAAATATAGATAAAAAAGCT
AGCTATAATAACAAATGTAGGTCACAATTATTTTAAAATCATGCAATGTC
AAGGAAAATATGACAGagaaaatgatcaaattttcaaagaatataagcga
tacaaaaagaaaaagccaTTACCTGACTTTTCCAAAGTTATTGATTTCCA
GCAACCTGAAAAATATGGAGCGCTTTTGAAGGAAATTACTGTTGCACCTC
ATCAAGCTACTTTTGATTATCACAAAATTGGATTGAAAAATCCTAAAGAA
TGGAAAGTTTATGAGCTTACATCATGTCCAGGTTTTCTTGTAGTTCCAAA
CCCTTTTCTAAGTGCTGACTCACAAAGTCATTGGGTAAAGAGAGCATTGA
CAGACTACACCAAAAAACCTTTTCCTTCAAACCTTGATGTATTAATGACT
CTTGAAAATGATAAGAAGACACTCTGGGATATCAGTAAGGAAAAATCACC
CACAGATAATTCATTTATCCAGAAACTGAGGTGGGTACACATGGGATACC
ATTTTGATTACAATGTTGTCGATTATAAAGCAAAACAGTACTTTGGTTTT
CCTGATGACCTAGCTTGCTTAACCAAGACCATTGCTTCTGTCTTTAAATT
TCCAGACTATTATGCTGAAACTGGTATAATTAATTATTACCCTGAAGGTG
CAAGTATGGGCGGACATACTGATCATTATGAAGAAGAATTATGTCAACCG
CTTATCAGTTATAGTTTTGGTCAATCTGCTATATACCTCATTGGAGGCCC
AACTAGAGATGTCAAACCAGAGGCTATCTGGGTGCGTTCTGGTGATATTA
TGTTGATGACAGGGCCTTCACGTGTTGCCTTTCATGCTGTTCCTTGCATC
ATTACCAAACCATCTAAAACAACTCCAGAGAATATTGGAGATTGTCCTTT
GGTACTAGAAAGTGATAACAGCAATATAAATGTTAATAAAAAAGAGATTG
ATGGTTGTATTTGGAACAATGCAATGGCATCAAATGACTGGAAAGAATTT
TCTGAATATATTTCTAATACCAGGATTAATATAAATATTCGACAAGTTCA
TAAATATAAGCTGGACAGTGGTGACAAACAGGCTGATGAttaattattat
taattattgtatttttgtaatGATTTTATATGTTATCCAAAATTTTATCT
ACAAAGATTTAATGGCCATTCCTTTGTATTACTTCCTCTAACCTTTGTTC
CTCTCAGTGTTTAAAGATGACCATAATAATCAACTTAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00056879TCONS_00056879Clytia hemisphaericatranscript
TCONS_00056880TCONS_00056880Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00056879-proteinTCONS_00056879-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:954727..964514 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.31	12.01	5.89	5.64	1.84	1.36	1.32	1.9	1.23	1.16	1.01	0.95	0.97	0.66	0.92	0.94	1.78	1.04	0.79	0.69	3.3	2.44	10.89	8.8	0.4	0.72	2.61	1.6	3.98	4.78