TCONS_00056875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056875
Unique NameTCONS_00056875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056875 ID=TCONS_00056875|Name=TCONS_00056875|organism=Clytia hemisphaerica|type=transcript|length=1336bp
CAAATTTGTctttatcaaataaataattAAACTTACAAAGAGGTGAtaca
attttctttactttttacCTCAATGCTGAGATCATTCTAACCAATCCAAA
ACCTTCCTCACTAACGTGTTTATCATTTTTTGGTCTCCTCTTGGTTAGTT
TCTTGGAAGGGCCgtttctgtttttatttttgactctgttaaagtttatt
tttaagGGGTCTCACCTGAACCACCCTCAGTTGAAACTTCGGTGAATGTT
TCAGTAACTTCAGGCTCTTGGGTGGTAGCTTCAGGCTCTTGGGTGGTAGC
TTCAGGCTCTTGAGTGGTAGCTTCAGGCTCTTGGGTTGTAGCCTCAGGCT
CTTGGGTGGTTGCATCAGGCTGTTGAGTGGTAGCTTCAGGCTCTTGGGTG
GTTGCTTCGGGCTCTTGAGTTGTAGCTTCGGGCTCTTGAGTTGTAGCTTC
AGGCTCTTGGGTGGTTGCTTCGGGCTCTTGGGTGGTTGCTTCGGGCTGTT
GAGTGGTTGCTTCGGGCTCTTGGGTGGTGACTTCGGGCTGTTGGGTGGTT
GCTTCAGGCTCTTGGGTAGTAGCTTCAGGCTGTTGGGTGGTTGCATCAGG
CTCTTGGGTGGTTGCTTCGGGCTCTTGGGTGGTTGCTTCGGGCTGTTGAG
TGGTTGCTTCGGGCTGTTGGGTGGTGACTTCGGGCTGTTGGGTGGTGACT
TCGGGCTGTTGGGTGGTTGCTTCAGGCTCTTGGGTAGTAGCTTCAGGCTG
TTGGGTGGTTGCATCAGGCTCTTGGGTGGTTGCTTCGGGCTCTTGAGTTG
TAGCTTCGGGCTCTTGAGTTGTAGCTTCAGGCTCTTGGGTGGTTGCTTCG
GGCTCTTGGGTGGTTGCTTCGGGCTCTTGGGTGGTTGCTTCGGGCTGTTG
AGTGGTGGCTTCGGGCTGTTGGGTGGTTGCTTCAGGCTGTTGGGTGGTGG
CTTCGGGCTGTTGGGTGGTTACTGCCGGCTGTGGAGTGGTGGTAGTAACA
GGAGCTTGAGTTGTTGCAGGGCAGACTGGTTCTTTGCCACAGCTTTCAGT
ATTGTTTGCTGAGTAAACAAACTTGATGTAGGTGATCATGGGACTNGCCA
CAGCTTTCAGTATTGTTTGCTGAGTAAACAAACTTGATGTAGGTGATCAT
AGGACCTACTCCAGTGGTTTGATCAAAGTTCAACGAGAAAGGGTAAACAA
AAGTTGAGCCTTGTGCTTTGTTACCACCAGGGATACTCTGGAAAACATAG
CTGAAACCTGCGCACGTGTCTTGGTTGTCGATGCGATTAACACCTTTTTC
GATGTTGAAGCCAGTTGTGGATGCGTTAAATCCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_284:831935..833417+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056875 ID=TCONS_00056875|Name=TCONS_00056875|organism=Clytia hemisphaerica|type=transcript|length=1483bp|location=Sequence derived from alignment at scaffold_284:831935..833417+ (Clytia hemisphaerica)
CAAATTTGTctttatcaaataaataattAAACTTACAAAGAGGTGAtaca
attttctttactttttacCTCAATGCTGAGATCATTCTAACCAATCCAAA
ACCTTCCTCACTAACGTGTTTATCATTTTTTGGTCTCCTCTTGGTTAGTT
TCTTGGAAGGGCCgtttctgtttttatttttgactctgttaaagtttatt
tttaagGGGTCTCACCTGAACCACCCTCAGTTGAAACTTCGGTGAATGTT
TCAGTAACTTCAGGCTCTTGGGTAGTAGCTTCAGGCTCTTGGGTGGTAGC
TTCAGTCTGTTGGGTAGTTGCTTCGGGCTGTTGGGTGGTAACTTCAGGCT
CTTGAGTGGTAGCTTCAGGCTCTTGGGTGGTAGCTTCAGGCTCTTGGGTG
GTAGCTTCAGGCTCTTGAGTGGTAGCTTCAGGCTCTTGGGTTGTAGCCTC
AGGCTCTTGGGTGGTTGCATCAGGCTGTTGAGTGGTAGCTTCAGGCTCTT
GGGTGGTTGCTTCGGGCTCTTGAGTTGTAGCTTCGGGCTCTTGAGTTGTA
GCTTCAGGCTCTTGGGTGGTTGCTTCGGGCTCTTGGGTGGTTGCTTCGGG
CTGTTGAGTGGTTGCTTCGGGCTCTTGGGTGGTGACTTCGGGCTGTTGGG
TGGTTGCTTCAGGCTCTTGGGTAGTAGCTTCAGGCTGTTGGGTGGTTGCA
TCAGGCTCTTGGGTGGTTGCTTCGGGCTCTTGGGTGGTTGCTTCGGGCTG
TTGAGTGGTTGCTTCGGGCTGTTGGGTGGTGACTTCGGGCTGTTGGGTGG
TGACTTCGGGCTGTTGGGTGGTTGCTTCAGGCTCTTGGGTAGTAGCTTCA
GGCTGTTGGGTGGTTGCATCAGGCTCTTGGGTGGTTGCTTCGGGCTCTTG
AGTTGTAGCTTCGGGCTCTTGAGTTGTAGCTTCAGGCTCTTGGGTGGTTG
CTTCGGGCTCTTGGGTGGTTGCTTCGGGCTCTTGGGTGGTTGCTTCGGGC
TGTTGAGTGGTGGCTTCGGGCTGTTGGGTGGTTGCTTCAGGCTGTTGGGT
GGTGGCTTCGGGTTGTTGGGTGGTTTCCTCTGGCTTTTGAGTGGTGGCTT
CAGGCTGTTGGGTGGTTACTGCCGGCTGTGGAGTGGTGGTAGTAACAGGA
GCTTGAGTTGTTGCAGGGCAGACTGGTTCTTTGCCACAGCTTTCAGTATT
GTTTGCTGAGTAAACAAACTTGATGTAGGTGATCATGGGACTNGCCACAG
CTTTCAGTATTGTTTGCTGAGTAAACAAACTTGATGTAGGTGATCATAGG
ACCTACTCCAGTGGTTTGATCAAAGTTCAACGAGAAAGGGTAAACAAAAG
TTGAGCCTTGTGCTTTGTTACCACCAGGGATACTCTGGAAAACATAGCTG
AAACCTGCGCACGTGTCTTGGTTGTCGATGCGATTAACACCTTTTTCGAT
GTTGAAGCCAGTTGTGGATGCGTTAAATCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035832XLOC_035832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056875-exon-scaffold_284-1491911889:831935..832197TCONS_00056875-exon-scaffold_284-1491911889:831935..832197Clytia hemisphaericaexon
TCONS_00056875-exon-scaffold_284-1510915933:831935..832197TCONS_00056875-exon-scaffold_284-1510915933:831935..832197Clytia hemisphaericaexon
TCONS_00056875-exon-scaffold_284-1575043694:831935..832197TCONS_00056875-exon-scaffold_284-1575043694:831935..832197Clytia hemisphaericaexon
TCONS_00056875-exon-scaffold_284-1491911889:832303..832995TCONS_00056875-exon-scaffold_284-1491911889:832303..832995Clytia hemisphaericaexon
TCONS_00056875-exon-scaffold_284-1510915933:832303..832995TCONS_00056875-exon-scaffold_284-1510915933:832303..832995Clytia hemisphaericaexon
TCONS_00056875-exon-scaffold_284-1575043694:832303..832995TCONS_00056875-exon-scaffold_284-1575043694:832303..832995Clytia hemisphaericaexon
TCONS_00056875-exon-scaffold_284-1491911889:833038..833417TCONS_00056875-exon-scaffold_284-1491911889:833038..833417Clytia hemisphaericaexon
TCONS_00056875-exon-scaffold_284-1510915933:833038..833417TCONS_00056875-exon-scaffold_284-1510915933:833038..833417Clytia hemisphaericaexon
TCONS_00056875-exon-scaffold_284-1575043694:833038..833417TCONS_00056875-exon-scaffold_284-1575043694:833038..833417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:831935..833417 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283318	0.337675	0.392074	0.523067	0	0	0.121417	0.113669	0.185692	0.0985755	0	0.0209654	0	0	0.0178753	0	45.2548	52.2707	0	0	121.685	128.803	90.5602	121.382	74.796	111.095	0.0431651	0.230335	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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