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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056860 ID=TCONS_00056860|Name=TCONS_00056860|organism=Clytia hemisphaerica|type=transcript|length=3546bpRun BLAST on NCBI transcript from alignment at scaffold_284:358594..389905+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056860 ID=TCONS_00056860|Name=TCONS_00056860|organism=Clytia hemisphaerica|type=transcript|length=31312bp|location=Sequence derived from alignment at scaffold_284:358594..389905+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056860 vs. Swiss-Prot (Human)
Match: APBA1 (Amyloid-beta A4 precursor protein-binding family A member 1 OS=Homo sapiens GN=APBA1 PE=1 SV=3) HSP 1 Score: 350.132 bits (897), Expect = 1.152e-103 Identity = 189/402 (47.01%), Postives = 264/402 (65.67%), Query Frame = 1
Query: 127 VEGPHTENDLNSGVRYKMKYLGSCQITTQHPVTKETRMQQAQDAYKRIK------NEGXXXXXXXXXVSTNVDMFISLERIKIINKDTKFEDVMMDHALRTVCFICDMGKILVLMARRLTSDGVTDFNIEQGQPITLGNITGGREKKTSKNICHVFEAEIEASQIAKAIGQAFNMAYRQFLTTNGISHDHVEEAEYGNVLESQKLVGQDLDRLTDNSQARDIVVQKRRGDPLGIMLLESGWGSMLPTVFIAHLANYSAAARSQRLTVGDHILTCNGASFVGLPLSECNEILRNTRSTERVIFXXXXXXXXXXXXXXXXXTKYQLGFSVQNGTICSLLRGGIAERGGVRVGHRIIEINGDSVVAKSHQYIVDILANTIGSISMKTMPVAMYRLMVGDDQPLHV 1314
V GP DL G+ + YLGS Q+ + +K RM QAQ+A RIK E + T VD+FIS +RIK++N DT+ + MMDH LRT+ +I D+G I+VLMARR + N+E P G K+ K ICHVFE+E +A IA++IGQAF++AY++FL NGI+ + + + EY ++L +Q + DL + + +D+ ++K++G+ LG++++ESGWGS+LPTV IA++ + A +S +L +GD I++ NG S VGLPLS C I++ ++ RV +V CPPV V++ RPD +YQLGFSVQNG ICSL+RGGIAERGGVRVGHRIIEING SVVA H+ IV IL+N +G I MKTMP AMYRL+ +QP+++
Sbjct: 446 VPGPCDPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDLFISTQRIKVLNADTQ--ETMMDHPLRTISYIADIGNIVVLMARRRMPRSNSQENVEASHPSQDG-------KRQYKMICHVFESE-DAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDLLNTQDMYNDDLIHFSKSENCKDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLTAQEQPVYI 837 The following BLAST results are available for this feature:
BLAST of TCONS_00056860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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