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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056854 ID=TCONS_00056854|Name=TCONS_00056854|organism=Clytia hemisphaerica|type=transcript|length=3073bp
GAGAGAAACGAGAGAAGCAAGCACGCAATTCTTTTGGAAATATTGCTTGT
ATAGAAAGAGACTTCGGGAAAACACAAATCGAACCACAAGacaaaatgct
ctttttcaagGTTTTCAAGGAATTCCTTTAGATCATGTACACTTTTCAAG
GTTGTTTGGTCTATTTTAAAGTTTCTTCATaagcttttcaaggttttcaa
ggtcctgTGGTCACTctcttttcaataatttgaagcaaatgtcaaatttt
tggtggtgatgatgacatcattttaacatcttttgtacttttactcacat
tgagtacattttatgacttttttgtaagcaaaaaagttgttcagcatgaa
aaaccctttccaacggtatataatatgtccatGTTCAGAAATTTcagcaa
tttcaaaaaaaatacaaaatccgccattttgaaatttccaccattatgga
aaatgcccaaggtgtgaaaagtgtcactcgatggtttttcactcctaagg
acctaacaaacacatttcaatcaaaaaatgtcATGTGTACGCAAATTTTG
GGTTCCCTAAATTAAGCCTGAAATTCCCCTGGACCATTAGTCAGAAATTC
Gttcaaaaacataactttttggtcaaaaagcatcaacagaggagatcaat
ttttgatttttttcatcattttacataatggagaataacttttagagata
cgaaggcattcagttttcaaactaaagggaatagtttgtaaaagtcaaat
tttggttaaaaatggctaaaatcgatttttgtcaaaaaacaccaaagaag
gagagcaaaaagccaaataattgttttttgacaGCAGTTNCACTTGAGGT
TCCAttgattgatatttttcttaaaaaccaACAATATACTGAATTTAACA
TTCATTAcagaaagatatttttaaaagtcTCACACATGAAATTTTAAGAG
TTTCTTTCTTTATGTTTTAGTCTTAAGATTTCAAATACCCTTAAGGAAAC
AAATTTGTCAAGTGATCATCTTTTGGATATAACTATGTACAAAAtaacac
ctccttctcacagacccactgggaacccttcccactggaaaaattggcca
aaaNAATTTCAGTTGCCAGCAGACTTGTTTtagcagtatatttttgtaaa
aacgctgGTTATTGAAAAAAACCTCCAAGAAGGAgtgcaaaaaatattat
tttcaaaaattttgaattttttgctaaatggcaattctattggtagcaat
tttcaaaaaaaattaaattctaaaaacctttactttgctgacagtcagca
tttttctaaaacaggtaaaatcgaaaaaaNCCTCTaaattttgtccccac
tgaaaataatgaaataaaaccaatcctcactgcaaaatatttactatttt
tcccatccccactgaattttctgacttgataacaaaaaaattgaaatccc
cattcacaaaaaatatgagaatatcaatctCCGTCGAGTTtcggtccgtt
atttttattcccacttgctgaaaaaatcttaccgGGTCTGAGAAGGGGGT
TTATTGAAAAATCTGATGTATTCtcccaatgtttacaaaaaaaaaccaaG
ACACTCTTCAAAGGGGATTAACCTTTTGTGTTTCAATTAGTACTGATACA
TACaggtgcatgtgaaaaaagttATCCTTTCTGATTTGaacttctgtaat
tcgaattcttCTGTAAATCGATCTAAAAAAATCGGTGCCTTCAGCTTGAA
AATTGTATAAAataatttctgtaattcgaatctttctctaattctaAGAA
GATTAATTGTCCTCTCAAAATCTAATTAGAAAGACTGTTTTGACATTTCT
AGTCTTTATACTTGCCATTAGTTTTTCAAAACATCAGTGTAGAACTCGAC
CTCAGGGTGGTTCTCGATGACATACATTCCCTTGGTGTGGCAAGTACATC
GATCATTATTGATGACTTCCATCGAATAAGGGATACGGTATTTCAAACCC
ATAATGGCAGCTTTGCACAATGTCGGTTGATTGGAGCCGGTTGCCGAATG
ACAAGTCAACGTTACATCCATCTCTCCGCTGTTGGTGACACCCGGTGTTC
CAAAAACATTACGGAAATCATCTTCTACTGGTGTTATTTCAATTTCGTCA
GAATCCAAATCCGAGACTCGTGGTATTTTGTTTCCCATTGTGAAACCAAT
AAACGGACGAAACCCGTCGGTGTATTTATGGTAAGCTAGCTCTGAATATT
GTTTCTTGAGCCTAAATACTAGGTTATCTGGTCCTtcttttttggtcttt
ttgtTTAAGACGTACCGTTGCGCGACCAACGTCTTCTTAGTGATTTCGAT
GTTGGTAACGTCGTAAGATAACGTATCAACAACGATAGTCCAATTCAACT
GTGGATTTGATGTTTTACAACATTCCTTGAGTTGAATTTTGGCTGAAGCG
TTGTTGGTTAAGAAGATCACTGCATAAAACGTTGTCAAAACAGCTAACCC
AAGTTTGATGGAAGACATATTTACAGTTGTCTTATTCAATCTCTGGTTTG
TTATTTAGTTGTGAAATTCAAGAAACAAGCTTTTTTCCTTAGATTTTAAA
TTTGTCTATTTACGTATAGAATAGTCTCTGCTCTANGACGTACCGTTGCG
CGACCAACGTCTTCTTAGTGATTTCGATGTTGGTAACGTCGTAAGATAAC
GTATCAACAACGATAGTCCAATTCAACTGTGGATTTGATGTTTTACAACA
TTCCTTGAGTTGAATTTTGGCTGAAGCATTGTTGATTAAGAAGATCACTG
CATAAAACGTTGTCAAAACAGCTAACCCCAGTctgattgaaaacattttt
aaagttGTCTTATTCAATCTCTGGTTTGTTATTTAGTTGTGAAATTCAAG
AAACAAGCTTTTTTCCTTAGATTTTAAATTTGTCTATTTACGTATAGAAT
AGTCTCTGCtctataaatttcaaaataatcctCTAGCTTTCCACGCCTTT
TTGAAAATAGATGATTGAATACAGTATCTTCCGTAAATAGGTGATTTCAA
AGAACCCCTTAAACTAGTTTTTC Run BLAST on NCBI transcript from alignment at scaffold_284:282917..286102+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056854 ID=TCONS_00056854|Name=TCONS_00056854|organism=Clytia hemisphaerica|type=transcript|length=3186bp|location=Sequence derived from alignment at scaffold_284:282917..286102+ (Clytia hemisphaerica)
GAGAGAAACGAGAGAAGCAAGCACGCAATTCTTTTGGAAATATTGCTTGT
ATAGAAAGAGACTTCGGGAAAACACAAATCGAACCACAAGacaaaatgct
ctttttcaaggttttcaaggaattCCTTTAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAGGTTTTCAAGGAATTCCTTTAGATCATG
TACACTTTTCAAGGTTGTTTGGTCTATTTTAAAGTTTCTTCATaagcttt
tcaaggttttcaaggtcctgTGGTCACTctcttttcaataatttgaagca
aatgtcaaatttttggtggtgatgatgacatcattttaacatcttttgta
cttttactcacattgagtacattttatgacttttttgtaagcaaaaaagt
tgttcagcatgaaaaaccctttccaacggtatataatatgtccatGTTCA
GAAATTTcagcaatttcaaaaaaaatacaaaatccgccattttgaaattt
ccaccattatggaaaatgcccaaggtgtgaaaagtgtcactcgatggttt
ttcactcctaaggacctaacaaacacatttcaatcaaaaaatgtcATGTG
TACGCAAATTTTGGGTTCCCTAAATTAAGCCTGAAATTCCCCTGGACCAT
TAGTCAGAAATTCGttcaaaaacataactttttggtcaaaaagcatcaac
agaggagatcaatttttgatttttttcatcattttacataatggagaata
acttttagagatacgaaggcattcagttttcaaactaaagggaatagttt
gtaaaagtcaaattttggttaaaaatggctaaaatcgatttttgtcaaaa
aacaccaaagaaggagagcaaaaagccaaataattgttttttgacaGCAG
TTNCACTTGAGGTTCCAttgattgatatttttcttaaaaaccaACAATAT
ACTGAATTTAACATTCATTAcagaaagatatttttaaaagtcTCACACAT
GAAATTTTAAGAGTTTCTTTCTTTATGTTTTAGTCTTAAGATTTCAAATA
CCCTTAAGGAAACAAATTTGTCAAGTGATCATCTTTTGGATATAACTATG
TACAAAAtaacacctccttctcacagacccactgggaacccttcccactg
gaaaaattggccaaaaNAATTTCAGTTGCCAGCAGACTTGTTTtagcagt
atatttttgtaaaaacgctgGTTATTGAAAAAAACCTCCAAGAAGGAgtg
caaaaaatattattttcaaaaattttgaattttttgctaaatggcaattc
tattggtagcaattttcaaaaaaaattaaattctaaaaacctttactttg
ctgacagtcagcatttttctaaaacaggtaaaatcgaaaaaaNCCTCTaa
attttgtccccactgaaaataatgaaataaaaccaatcctcactgcaaaa
tatttactatttttcccatccccactgaattttctgacttgataacaaaa
aaattgaaatccccattcacaaaaaatatgagaatatcaatctCCGTCGA
GTTtcggtccgttatttttattcccacttgctgaaaaaatcttaccgGGT
CTGAGAAGGGGGTTTATTGAAAAATCTGATGTATTCtcccaatgtttaca
aaaaaaaaccaaGACACTCTTCAAAGGGGATTAACCTTTTGTGTTTCAAT
TAGTACTGATACATACaggtgcatgtgaaaaaagttATCCTTTCTGATTT
GaacttctgtaattcgaattcttCTGTAAATCGATCTAAAAAAATCGGTG
CCTTCAGCTTGAAAATTGTATAAAataatttctgtaattcgaatctttct
ctaattctaAGAAGATTAATTGTCCTCTCAAAATCTAATTAGAAAGACTG
TTTTGACATTTCTAGTCTTTATACTTGCCATTAGTTTTTCAAAACATCAG
TGTAGAACTCGACCTCAGGGTGGTTCTCGATGACATACATTCCCTTGGTG
TGGCAAGTACATCGATCATTATTGATGACTTCCATCGAATAAGGGATACG
GTATTTCAAACCCATAATGGCAGCTTTGCACAATGTCGGTTGATTGGAGC
CGGTTGCCGAATGACAAGTCAACGTTACATCCATCTCTCCGCTGTTGGTG
ACACCCGGTGTTCCAAAAACATTACGGAAATCATCTTCTACTGGTGTTAT
TTCAATTTCGTCAGAATCCAAATCCGAGACTCGTGGTATTTTGTTTCCCA
TTGTGAAACCAATAAACGGACGAAACCCGTCGGTGTATTTATGGTAAGCT
AGCTCTGAATATTGTTTCTTGAGCCTAAATACTAGGTTATCTGGTCCTtc
ttttttggtctttttgtTTAAGACGTACCGTTGCGCGACCAACGTCTTCT
TAGTGATTTCGATGTTGGTAACGTCGTAAGATAACGTATCAACAACGATA
GTCCAATTCAACTGTGGATTTGATGTTTTACAACATTCCTTGAGTTGAAT
TTTGGCTGAAGCGTTGTTGGTTAAGAAGATCACTGCATAAAACGTTGTCA
AAACAGCTAACCCAAGTTTGATGGAAGACATATTTACAGTTGTCTTATTC
AATCTCTGGTTTGTTATTTAGTTGTGAAATTCAAGAAACAAGCTTTTTTC
CTTAGATTTTAAATTTGTCTATTTACGTATAGAATAGTCTCTGCTCTANG
ACGTACCGTTGCGCGACCAACGTCTTCTTAGTGATTTCGATGTTGGTAAC
GTCGTAAGATAACGTATCAACAACGATAGTCCAATTCAACTGTGGATTTG
ATGTTTTACAACATTCCTTGAGTTGAATTTTGGCTGAAGCATTGTTGATT
AAGAAGATCACTGCATAAAACGTTGTCAAAACAGCTAACCCCAGTctgat
tgaaaacatttttaaagttGTCTTATTCAATCTCTGGTTTGTTATTTAGT
TGTGAAATTCAAGAAACAAGCTTTTTTCCTTAGATTTTAAATTTGTCTAT
TTACGTATAGAATAGTCTCTGCtctataaatttcaaaataatcctCTAGC
TTTCCACGCCTTTTTGAAAATAGATGATTGAATACAGTATCTTCCGTAAA
TAGGTGATTTCAAAGAACCCCTTAAACTAGTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056854-exon-scaffold_284-1491911889:282917..283026 | TCONS_00056854-exon-scaffold_284-1491911889:282917..283026 | Clytia hemisphaerica | exon |
| TCONS_00056854-exon-scaffold_284-1510915933:282917..283026 | TCONS_00056854-exon-scaffold_284-1510915933:282917..283026 | Clytia hemisphaerica | exon |
| TCONS_00056854-exon-scaffold_284-1575043694:282917..283026 | TCONS_00056854-exon-scaffold_284-1575043694:282917..283026 | Clytia hemisphaerica | exon |
| TCONS_00056854-exon-scaffold_284-1491911889:283140..286102 | TCONS_00056854-exon-scaffold_284-1491911889:283140..286102 | Clytia hemisphaerica | exon |
| TCONS_00056854-exon-scaffold_284-1510915933:283140..286102 | TCONS_00056854-exon-scaffold_284-1510915933:283140..286102 | Clytia hemisphaerica | exon |
| TCONS_00056854-exon-scaffold_284-1575043694:283140..286102 | TCONS_00056854-exon-scaffold_284-1575043694:283140..286102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:282917..286102 + |
Blast
The following BLAST results are available for this feature:
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