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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056849 ID=TCONS_00056849|Name=TCONS_00056849|organism=Clytia hemisphaerica|type=transcript|length=805bp
attttgcaaaaaaaaaagtttatgacCCTCTTTACCAGAAAAATGTCTTT
GAAGATGACATGACTGTGATAAGATAAGAAAATGTCAAAGACAAAGTATT
TtaTGATACTAGCCCACCTAGTATCGCTTTCACGTGGACAAGATACATGC
CCGAAAACAAATTGTAAGAAAACCATTGGTACCAATGATATTCACCTTAC
TTCCTTTACCAAAACTGCCCACAAAAAATTCACATTCTGGCCACCTAGTA
AAACTGTTGGTGGCGTATCAGGAACAAAAGAAGATCGTGAACGACGATGT
GCAGAACAGTGCTCCAAACAAGGGATATCCGTATGTAAAACAGCTCATTT
AAGCCCGTATACAGCGCCACCTTCGACATGTTACTTGTTTGCTGAGGATG
CCTACAACCACACGGAAAGTGTCACAAGCACTGTTAGTAGCTGGACTACG
TTTCACGTCAAGAATTCGTTTTGTGAAAGCTTTCCGTGCAACACTGGAGT
ATGTCAACCAGACTTCGAATTGGATCGTGGACATTGTAAATGTTCTGGTT
ATTCTGGAGAGTTCTGCCAAACACTAGACCCATTGAACACAGAGGACGTT
GGTCATTGGACTTTTGATTCTGGCTACATGGAAAATGTTGGGACTGGGGC
AAGCAACCTTGGTGACGGTACCATGACAACTGGTGTCATTGTGGAAACAT
TGGAGCGTTCTACCAAAGTCATGCATTGTAAAGGTGGCGGCTCTGGttat
gaaaattgtttttcaatCTTTCCTGATTTCTCAAAGGGTTGTTGGTCATC
Gtaag Run BLAST on NCBI protein sequence of TCONS_00056849-protein >TCONS_00056849-protein ID=TCONS_00056849-protein|Name=TCONS_00056849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MSKTKYFMILAHLVSLSRGQDTCPKTNCKKTIGTNDIHLTSFTKTAHKKF
TFWPPSKTVGGVSGTKEDRERRCAEQCSKQGISVCKTAHLSPYTAPPSTC
YLFAEDAYNHTESVTSTVSSWTTFHVKNSFCESFPCNTGVCQPDFELDRG
HCKCSGYSGEFCQTLDPLNTEDVGHWTFDSGYMENVGTGASNLGDGTMTT
GVIVETLERSTKVMHCKGGGSGYENCFSIFPDFSKGCWSS Run BLAST on NCBI transcript from alignment at scaffold_284:204094..208543+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056849 ID=TCONS_00056849|Name=TCONS_00056849|organism=Clytia hemisphaerica|type=transcript|length=4450bp|location=Sequence derived from alignment at scaffold_284:204094..208543+ (Clytia hemisphaerica)
attttgcaaaaaaaaaagtttatgacCCTCTTTACCAGAAAAATGTCTTT
GAAGATGACATGACTGTGATAAGATAAGAAAATGTCAAAGACAAAGTATT
TGTAAGTaatctatttgtttttttttatttaaatcaattttcttcttttc
tataATTTTTATAAACCCACTAATAGAGTTAATTTTTCCCGGTGTCACAG
GAAATAAGTACTCCCGAAAAAAGTACTCCCGGGAGTACGTTTTTCCTAGG
AAATTGTTCAAAGGGCTGAAAAGGAATCTTCAACCCTTAATATCAATATA
TGTAATACAAATAGATCactatttacaaatttaattttagtaTGATACTA
GCCCACCTAGTATCGCTTTCACGTGGACAAGATACATGCCCGAAAACAAA
TTGTAAGAAAACCATTGGTACCAATGATATTCACCTTACTTCCTTTACCA
AAACTGCCCACAAAAAATTCACATTCTGGCCACCTAGTAAAACTGTTGGT
GGCGTATCAGGAACAAAAGAAGATCGTGAACGACGATGTGCAGAACAGTG
CTCCAAACAAGGGATATCCGTATGTAAAACAGCTCATTTAAGCCCGTATA
CAGCGCCACCTTCGACATGTTACTTGTTTGCTGAGGATGCCTACAACCAC
ACGGAAAGTGTCACAAGCACTGTTAGTAGCTGGACTACGTTTCACGTCAA
GGTACTGATTTTTTCCAATAATCATACAGAGattaatatctatttttaaa
tcTTCTTCAATTCATTCTTTGTTGCCTGTTGTACTTGTTTAAGTTTCAGT
ATTTCCCTTCGTGGAAAGAATTCTCCAGCTgcctaaaagcttttgaattt
ttcggggcatgccacttaaaacatatgttattattatttttgataaCGTT
CATAAGAAATTGGCCATTTTAGAGTCTGTAAAGCTTTAAaatcttcttaa
ttttttcttaacattttggccattaaagccttatgttcttataaagtttg
ttctttataaaaaaacttgtacacttttttaCAAAAGGAACATGTTTaca
aggaacttgaggctgaaaatggtccgaaAATTAAGGAATTactaaggaac
tgctcaggctgagaattaGAAAACAAGTTAAGGAACAGAGACTTAAAAAT
GAACTTGTAcacattttaaaaaaaaactaaacaaaaaaattaaaaaatta
aaaaataatgttcGTCTTTTGTCAATTGTTCAACAAATCATCAAATCAGT
CCAACtaagtaaataaggaactcgacaaggaactttgaggctgaaaataa
ggaactccaggcttgGAGCCATGTTAagattctttataaaaaaacgtgta
ctttccTGGTTCTAGCACATTGtagcagtttttttttcttgaaaatttgc
cGAAAAATAGTCCtcgctaaaattcaaaaaaaaataaactccCGGCATAA
AAGTTTTTCGTATTGTTCTAAATTAACCCTTAATTACCTATTACTCATTT
TTAGGCAAGAAAATCAATTTACCCTGCAATTTGcaaaaataaggaaaatg
aTTCCTcgggaatttttttgtttaggATTTTTGGTGCTCTATCTAACATT
TTACCAGGGATATGTAATAGCgaagctggatgaaggacgagaattcctta
gcggattacttctttgtcttttctattataaactgttcataatagaaatc
catctctgtacccttgagtgttctgtttttataagaaaaataaagcagac
aaagtattcatgcacattttttgctatgatgttcccacttttcatcaaaa
taatatttccaGAAAATACCcgaaaagcttccttgtaaatgaaatctaat
tttatcagcgtgtgttatgaatttgagaagctttcatgattccTCTTTAG
AAATGTCGGATGtagatattttgacaaatatcaTAGGCGTAGCGTGATAC
CATGCAAAATTTATgaatgagagcggtttttacgacactgtaattattat
ttttgttttatcaaaagataatgaatatgtcataaacttCTGCACTCCTG
CATAAATTTACAGGGTATCTTGCTACGCCTAAGAATATTGTTTCAatcga
cttgaaattttttccataatcagacataccgactcgCTACCTGAAAATAC
CAGTTAGAAAGTGAAGCACCCTGCGGTGTAGCgtggtatttcaaatgaat
agGTGCTATctataatcttacagaagaaattttttataactttagtaatg
aaaacaatatttttcattttttcaaattgtcattcaccaatgttttacag
accctcttgataattaaaagtttttaatcgcgaagaataaatgcagcagc
agcaGAATCgttggctaagaggaaatccaaatttcacgagtttgtaattt
AAGAAGTCCagtttcatatcaaattttaatgtcagggtacagagatagaa
caagactttttcaaatgtgcgttatccagcttcGCTATTACATTATCCCT
GATtttaccatggaggtataaagaaaaacaggagtttatctgtcgttgaa
atctttttatttcttttataaaatgtttcaaaagaaattctaggctcgcc
cgatgaaataagacttaaTTAGAGCTCAAGTTTGTTCTGAACATTCTAAc
catcagtattgaagattatAGCCTcttctaatatacgaaaattaaataaa
acttagccccacaaaacaagtttatgttccatttcgttaCCCGTTCAACT
TTGtttcgaaaatatattttcttaagCTAGAAAATGGAAAGTTATTTATA
aacacacacgatttcagaataattttttgacaaaaagtcgccggagaatt
ttggaggagaATATCAAGCAATTGAGTTCATATTGAAGAAAACATTaatt
gaaaaatcttgtcatttgatgaaggattgccaagtttacaagTCTTTTTC
AATCCAAATATTTTCCTACACTGATGTCATAAACAATGACatttcatcta
atttctaaaactGAAATAAGCCAATATGATTCCACCAATggacaaaagag
ctcattaaaaatgcacgatatgaGAGATTATGATCATGCAAACCTCGTag
cttttttaatcgtagggcgagcttataattcttgatatgcgtaagtcatt
tttctagcggaaacacccgaaaaaatccggaatttgacccctctctgtta
ctaaaaatagaaacaccgAGGTCAAAATCGGGCTTTTTTCGaatgcttcc
gttaaaaaatatgacttCATCTTGAAATATGCATATCAAGAATTGGTTAT
AATaacatacttctcctgtttttctttgtaCCTCCATGATTTTACATTGT
TTCAGAATTCGTTTTGTGAAAGCTTTCCGTGCAACACTGGAGTATGTCAA
CCAGACTTCGAATTGGATCGTGGACATTGTAAATGTTCTGGTTATTCTGG
AGAGTTCTGCCAAACACTAGGTAAGTTAACctaccccagctggcacacaa
cgttgtttcagcgtttatctaacgttcacaacatctATATAAtgctagat
gaacgttgaaacaacgttgtgtgccagctgggtgtaCCAGCAGGCAAAAT
ACAGaataatgttttccaaaaaaaggaaatctaacctgataacagatcgT
GTGGAGCTTTTCCTTAACGCAACACGCTGCAGTTCTAAAGATCGATGAGA
ACTACGGTATAATCATAATTTCGCCCACGTTAGTCTTTAGAGCTGTACTG
GGAAATATGCaatctaaagtctgtctcaaaataatttgcagctgagacaa
aaatgatAATCACTgcgaaaaaagttttcaaaaatattcattcaatcaaa
agatatcaaacaaaaatcaTTGCTGGCTGACTCTATagagtagtaaaaaa
cgacaaaaaaaaacagcctattattgatgttgatttttttcttcttcatt
tttcattttcatttttttttatttttccaatttttttgcttgataatatt
ccactcacaaatatcttttcaacaagcataaAATCACaacttaattcaaa
ttctatctaAAGTTACAACCATTTTTGTCTcactcagctgcaaattattt
tgagacaagtTAAAAAGGTCATGtttgatttttgaataaaaaaaattaaa
ttttttttagaataagTACCATGTCTGTTACTGAGACAGAGGTGTTAATA
ACAGCTTCTATATAATCCTTAGACCCATTGAACACAGAGGACGTTGGTCA
TTGGACTTTTGATTCTGGCTACATGGAAAATGTTGGGACTGGGGCAAGCA
ACCTTGGTGACGGTACCATGACAACTGGTGTCATTGTGGAAACATTGGAG
CGTTCTACCAAAGTCATGCATTGTAAAGGTGGCGGCTCTGGttatgaaaa
ttgtttttcaatCTTTCCTGATTTCTCAAAGGGTTGTTGGTCATCGtaag
Coding sequence (CDS) from alignment at scaffold_284:204094..208543+ >TCONS_00056849 ID=TCONS_00056849|Name=TCONS_00056849|organism=Clytia hemisphaerica|type=CDS|length=2892bp|location=Sequence derived from alignment at scaffold_284:204094..208543+ (Clytia hemisphaerica)
ATGTCAAAGACAAAGTATTTtaTGATACTAGCCCACCTAGTATCGCTTTC
ACGTGGACAAGATACATGCCCGAAAACAAATTGTAAGAAAACCATTGGTA
CCAATGATATTCACCTTACTTCCTTTACCAAAACTGCCCACAAAAAATTC
ACATTCTGGCCACCTAGTAAAACTGTTGGTGGCGTATCAGGAACAAAAGA
AGATCGTGAACGACGATGTGCAGAACAGTGCTCCAAACAAGGGATATCCG
TATGTAAAACAGCTCATTTAAGCCCGTATACAGCGCCACCTTCGACATGT
TACTTGTTTGCTGAGGATGCCTACAACCACACGGAAAGTGTCACAAGCAC
TGTTAGTAGCTGGACTACGTTTCACGTCAAGAATTCGTTTTGTGAAAGCT
TTCCGTGCAACACTGGAGTATGTCAACCAGACTTCGAATTGGATCGTGGA
CATTGTAAATGTTCTGGTTATTCTGGAGAGTTCTGCCAAACACTAGACCC
ATTGAACACAGAGGACGTTGGTCATTGGACTTTTGATTCTGGCTACATGG
AAAATGTTGGGACTGGGGCAAGCAACCTTGGTGACGGTACCATGACAACT
GGTGTCATTGTGGAAACATTGGAGCGTTCTACCAAAGTCATGCATTGTAA
AGGTGGCGGCTCTGGttatgaaaattgtttttcaatCTTTCCTGATTTCT
CAAAGGGTTGTTGGTCATCGtaaATGTCAAAGACAAAGTATTTtaTGATA
CTAGCCCACCTAGTATCGCTTTCACGTGGACAAGATACATGCCCGAAAAC
AAATTGTAAGAAAACCATTGGTACCAATGATATTCACCTTACTTCCTTTA
CCAAAACTGCCCACAAAAAATTCACATTCTGGCCACCTAGTAAAACTGTT
GGTGGCGTATCAGGAACAAAAGAAGATCGTGAACGACGATGTGCAGAACA
GTGCTCCAAACAAGGGATATCCGTATGTAAAACAGCTCATTTAAGCCCGT
ATACAGCGCCACCTTCGACATGTTACTTGTTTGCTGAGGATGCCTACAAC
CACACGGAAAGTGTCACAAGCACTGTTAGTAGCTGGACTACGTTTCACGT
CAAGAATTCGTTTTGTGAAAGCTTTCCGTGCAACACTGGAGTATGTCAAC
CAGACTTCGAATTGGATCGTGGACATTGTAAATGTTCTGGTTATTCTGGA
GAGTTCTGCCAAACACTAGACCCATTGAACACAGAGGACGTTGGTCATTG
GACTTTTGATTCTGGCTACATGGAAAATGTTGGGACTGGGGCAAGCAACC
TTGGTGACGGTACCATGACAACTGGTGTCATTGTGGAAACATTGGAGCGT
TCTACCAAAGTCATGCATTGTAAAGGTGGCGGCTCTGGttatgaaaattg
tttttcaatCTTTCCTGATTTCTCAAAGGGTTGTTGGTCATCGtaaATGT
CAAAGACAAAGTATTTtaTGATACTAGCCCACCTAGTATCGCTTTCACGT
GGACAAGATACATGCCCGAAAACAAATTGTAAGAAAACCATTGGTACCAA
TGATATTCACCTTACTTCCTTTACCAAAACTGCCCACAAAAAATTCACAT
TCTGGCCACCTAGTAAAACTGTTGGTGGCGTATCAGGAACAAAAGAAGAT
CGTGAACGACGATGTGCAGAACAGTGCTCCAAACAAGGGATATCCGTATG
TAAAACAGCTCATTTAAGCCCGTATACAGCGCCACCTTCGACATGTTACT
TGTTTGCTGAGGATGCCTACAACCACACGGAAAGTGTCACAAGCACTGTT
AGTAGCTGGACTACGTTTCACGTCAAGAATTCGTTTTGTGAAAGCTTTCC
GTGCAACACTGGAGTATGTCAACCAGACTTCGAATTGGATCGTGGACATT
GTAAATGTTCTGGTTATTCTGGAGAGTTCTGCCAAACACTAGACCCATTG
AACACAGAGGACGTTGGTCATTGGACTTTTGATTCTGGCTACATGGAAAA
TGTTGGGACTGGGGCAAGCAACCTTGGTGACGGTACCATGACAACTGGTG
TCATTGTGGAAACATTGGAGCGTTCTACCAAAGTCATGCATTGTAAAGGT
GGCGGCTCTGGttatgaaaattgtttttcaatCTTTCCTGATTTCTCAAA
GGGTTGTTGGTCATCGtaaATGTCAAAGACAAAGTATTTtaTGATACTAG
CCCACCTAGTATCGCTTTCACGTGGACAAGATACATGCCCGAAAACAAAT
TGTAAGAAAACCATTGGTACCAATGATATTCACCTTACTTCCTTTACCAA
AACTGCCCACAAAAAATTCACATTCTGGCCACCTAGTAAAACTGTTGGTG
GCGTATCAGGAACAAAAGAAGATCGTGAACGACGATGTGCAGAACAGTGC
TCCAAACAAGGGATATCCGTATGTAAAACAGCTCATTTAAGCCCGTATAC
AGCGCCACCTTCGACATGTTACTTGTTTGCTGAGGATGCCTACAACCACA
CGGAAAGTGTCACAAGCACTGTTAGTAGCTGGACTACGTTTCACGTCAAG
AATTCGTTTTGTGAAAGCTTTCCGTGCAACACTGGAGTATGTCAACCAGA
CTTCGAATTGGATCGTGGACATTGTAAATGTTCTGGTTATTCTGGAGAGT
TCTGCCAAACACTAGACCCATTGAACACAGAGGACGTTGGTCATTGGACT
TTTGATTCTGGCTACATGGAAAATGTTGGGACTGGGGCAAGCAACCTTGG
TGACGGTACCATGACAACTGGTGTCATTGTGGAAACATTGGAGCGTTCTA
CCAAAGTCATGCATTGTAAAGGTGGCGGCTCTGGttatgaaaattgtttt
tcaatCTTTCCTGATTTCTCAAAGGGTTGTTGGTCATCGtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056849-exon-scaffold_284-1491911889:204094..204194 | TCONS_00056849-exon-scaffold_284-1491911889:204094..204194 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1510915933:204094..204194 | TCONS_00056849-exon-scaffold_284-1510915933:204094..204194 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1575043694:204094..204194 | TCONS_00056849-exon-scaffold_284-1575043694:204094..204194 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1491911889:204434..204794 | TCONS_00056849-exon-scaffold_284-1491911889:204434..204794 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1510915933:204434..204794 | TCONS_00056849-exon-scaffold_284-1510915933:204434..204794 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1575043694:204434..204794 | TCONS_00056849-exon-scaffold_284-1575043694:204434..204794 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1491911889:207449..207563 | TCONS_00056849-exon-scaffold_284-1491911889:207449..207563 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1510915933:207449..207563 | TCONS_00056849-exon-scaffold_284-1510915933:207449..207563 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1575043694:207449..207563 | TCONS_00056849-exon-scaffold_284-1575043694:207449..207563 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1491911889:208316..208543 | TCONS_00056849-exon-scaffold_284-1491911889:208316..208543 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1510915933:208316..208543 | TCONS_00056849-exon-scaffold_284-1510915933:208316..208543 | Clytia hemisphaerica | exon |
| TCONS_00056849-exon-scaffold_284-1575043694:208316..208543 | TCONS_00056849-exon-scaffold_284-1575043694:208316..208543 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:204094..208543 + |
Blast
The following BLAST results are available for this feature:
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