TCONS_00056846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056846
Unique NameTCONS_00056846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056846 ID=TCONS_00056846|Name=TCONS_00056846|organism=Clytia hemisphaerica|type=transcript|length=782bp
TTTAGATATGAAAAAGCAatgaaacattaaaaacaaactgataagaagta
aataaataaatacacGCTTGGGTTATGGGAATGGATTCTTGAAAGAGCGG
TACTGGTTGGTATAAAATCAAAGAGGAATGGACGAGAAGATCAAAGATCG
ATCTAAAAGATACAAGAAAACTGACTTCCTCGGTGAAGGCCAGTTTGCTA
CCGTCTATAAAGCTGAAGATTTGGAAAATGATAATCAAATTGTTGCCGTT
AAAAAGATTAAACTTGGTCATAGAACTGAAGTGAAAGATGGGATCAATCG
AACAGCGCTGAGAGAAATCAAATTATTACAAGAGATTAGTCACCCTAATA
TCATTGGGCTGTTGGATGTATTTGGACACAAGTCCAGCATCAGTTTGGTT
TTCGAATTTATGGAAACAGATTTAGAGGTCATAGCGAAAGATACATCACT
AGTACTCAGTCCCCCACACATCAAGAGCTTCGTTCTGATGACCATACAAG
GATTGGAATACTTGCACCAACATTGGATTCTCCACAGGGATATGAAGCCG
AATAACTTGCTGCTAGATCCAAGCGGTGTCTTGaaagttggtgattttgg
tttAGCTAAGGTGTACGGCTCGCCCAATCGTGTTTACACGCATCAAGTAG
TCACAAGGTATgagcatagtcattataaaaaaacccggtctggcaatgta
ttgtgttagctttttgttcaattttcttttgttacaaacaaaagacaagt
tgcaattggtatactttttgatcacgttacca
Run BLAST on NCBI

protein sequence of TCONS_00056846-protein

>TCONS_00056846-protein ID=TCONS_00056846-protein|Name=TCONS_00056846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MDEKIKDRSKRYKKTDFLGEGQFATVYKAEDLENDNQIVAVKKIKLGHRT
EVKDGINRTALREIKLLQEISHPNIIGLLDVFGHKSSISLVFEFMETDLE
VIAKDTSLVLSPPHIKSFVLMTIQGLEYLHQHWILHRDMKPNNLLLDPSG
VLKVGDFGLAKVYGSPNRVYTHQVVTRYEHSHYKKTRSGNVLC
Run BLAST on NCBI

transcript from alignment at scaffold_284:190718..198055+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056846 ID=TCONS_00056846|Name=TCONS_00056846|organism=Clytia hemisphaerica|type=transcript|length=7338bp|location=Sequence derived from alignment at scaffold_284:190718..198055+ (Clytia hemisphaerica)
TTTAGATATGAAAAAGCAatgaaacattaaaaacaaactgataagaagta
aataaataaatacacGCTTGGGTTATGGGAATGGATTCTTGAAAGAGCGG
TACTGGTTGGTATAAAATCAAAGAGGAATGGACGAGAAGATCAAAGATCG
ATCTAAAAGATACAAGAAAACTGACTTCCTCGGTGAAGGCCAGGtacgcg
ttttttataagaacaaactatataagaacataagggttcgatagccaaaa
tattagGAATAAgttcagaacataaaatattcacaaaatggtgaaaaaag
aactttttattgacattaacaaaaagttaaaaaaatacgatggcattgaa
aattttggatgttgtaACAAAACGTGTAATAAACAAGTATTTcgaaatgt
tcttatttcttcCACTGAGGTCGGATTCATTGGAATAAGTGTATTTtgaa
cacgttttttataagaagaaactacataagaacataaggcttcaatggcc
aaaatattaagaacaggtTAAGGACATTTAAGGTATTGTATGGTCcacac
ctattttcttaggaaagtggacaaaaatacccacaaaatggagaaaataa
gaacatgttaagaacattcaatgcttaaaactaaaaaagtttgcgtccaa
aggctttaaaaattttgatgttcttataaaaaaacgtttgtATTTATTCA
TCTATGGTTCTTGCAGAAAGGCTGAAAGATTTAAATATTTAAGGAACGAA
ATTTCTTTCCACTTATTGTGAGAGACGATTCCGACTTGgttttcaatgat
tttgttAATTCTCTGTTTAGTTTGCTACCGTCTATAAAGCTGAAGATTTG
GAAAATGATAATCAAATTGTTGCCGTTAAAAAGGTATCTCAACTTGACTA
CTGTATTGCATGAAAATTTCGCGGCatgaaaatttcgcggtttttttaca
gaaaattgcATTTCCTGGCATGAAAATTTCGCGGTCGAGCTCCAAAATAA
AGTAGATAGTGTTCAGAATTTGATTATGCCAGTGTTTTGAATAGTTTCTA
GTTTAAATTCGCTACCGTACTGTATGATTTGATTATAATTAAAAATAAGT
TCACTTTCTTTCTATCACGGGAAGAcgagttaaaggttttatttttacat
aagtgttccgtttcatatcaggacattGTCTTGCTATTATTATATACTGA
TTATAAGCAAAcagatgtttttattttcctttttctggcCAAtgttgctc
cacatctgtgtcaatccaatgtgaaaaagcttctAAATAGCGCgacgcgc
tgaatctaaaaatagattttattttctacataatcattactctcgatgta
tttgtacgagttccaatcccatcaacctttgcgttaatctcttttgcacg
ttaattgcattgtttgacaaaagatatattataacagcttgcacgtatct
ttaattgagccgcgttgaattgtgggattgcaactcgtacaaatctCAAA
Aagagtgaaaagtaataattatgacgtatgcgttgcggagcgctattgaa
ATTGATGAAGCAAACGAAGTCACTCTtaattaaaacaataaaaaaataaa
aacaatacctttaaaaatatgttttgttttaaaaataagaGTGGATATCG
TTTActaactcgtcaattttaagCTTTATCACACTGaattgacatggatg
tggagcaagattggttgtagaaaaaggcaaagaaaaacattttttcttta
ttcagcacaatataacaataggcagtagacactgtcctgaaatgaaatat
gtgtctggtaTGAAACGAGAACatttatataaaaatgaaaCCTTTTAACA
TGCCTTGCAGATAACAAAAAAAATACTATGAGTTGAATGGTataatgaaa
aatcaaaaaccaacATAAAAACAGNAATAACAGTCAATATGATTAAgaag
aattaactttctttacaattttaatgacgttaaagttattgagaattgtt
tttgtaaaagtgattcataaaagatgtctcatgacaattaatagGACACA
Gagaaaaactttgataaacattgcaaatttaataacacacacaagaactt
tctttctatagaagtggtacgaattgatacttttttccggacaccctgta
taacaATAGATCTAGTGGTAAGCTGTAAAGAACACTGTGAAAGTATGCTT
TACTTACACATAAACGGTTTAGTAGCTAATGTaaagtttctaaaaaattc
tctgtttttaaaataattttgattccccaaagcaatagcgctccgcaacg
catacgtcataattattacttttcacccttttttgacatttgtacgagtt
gcaatcccacaattcaacgcggctcaattaaagatacgtgtaAGCTGTTA
TATATATTTTGTCAAACGatcaattaacgtgcaaaagagattaatgcaaa
ggttgatgggattaaaactcgtacaaacacatcgagagtaatgattatgt
caaaaataaaatctatttttaaactcagcgcggtgcgctattgcAATACC
TAATTCTCATATAAAAACATCGCCTAATCTATTTTCtacctttcaaaaaa
aaactagaatttAGGAAACTATTTTAcacagggtgtctacgggaccttga
aaaccttgaaaaccttgaaaatgaaccacccaacctttgaaaaccttgaa
aactatcaattttctgggaaaaaccttgaaaaccttgaaaaatcgttaaa
aaccttgaaaaaaacttcttccTATTCATCCTTTTTGTCATACAATTTTT
CAATAGGGCAGTGGCTGAGTAACTCTTACTTATAGGTTCAGATTAGTTTT
GAGATTGAATGCTCTTATCTTTGAGTGCTAgacttttttcattcattacC
GCATACTATATTATGTTGGTTATATTATCATGAAAATATAAAGTACTGGA
CCTGTATCTCgactttgtatttttgtaataggcactgctagcttcgttgc
ctcctcttaaaaacataaaatgaacaatgaattttgataatgtacctctt
gggaataccttgctaacgaCGTCAAAGCTtggacaaaagtctctgttgtt
ctactcttcacAAGTCATTTATCTATATcatccgactaatatttctaaat
tctGTCTCAAAAGTAATAATTTCAGATAGTTTGTGGTTCAAATTATGATA
TTTGTaagacacaggctctcaactttggcttACTATTTTTTTAAGTCATA
aaaaaagtgattcaaaagtatacacgcagttaaaattctgaattttagcg
GTGAAAAACGTTTATAAGATATTATAGCAAacttatgaaaatattttgtc
aaatttcgcCAGCTCAATactctaaaaaaaaaattcgccgGTCTCGAAAA
TCTAACCAGACAttcaaaaagtaagaataatAAGTATGTTCCTAAACTGT
TTGTCATGaggaaatttccaaaaaacctTTATAACATTTAGAGAATTACA
CCTGTTTCTATAGCGATTCTGTCGCAACGAGTGCAACATATACTTTTATC
ATTAGCTGAGTTTTTATCACTCATAGTCCGTTTGCATGAGCCCTAAGAAA
TCGACTgttccccaattttcaaatcgcttcaggGCCGTTCATCAATAAAT
AATTTccttaaaacaactctttttttgaaagagtcaaaatcaattttttt
tcttttcggcGCCTCGTCGGTCACTGTAAACATTTGGTTTTTGCttatat
ttctttatttctacagttgAAAGACTAGGGAGCTGGAGACAAAAACTCTT
TTTGTGGTATGGTTCTAGAGAGGGAGATAGGAATTTAACTGTGGAAATAA
TTCCCCGGCCACCAAAAGCGGATAAATTTTATTGCCgtcctctatttttc
tttcgcctgccactctgaaaaaaaaaatcactgtaGAGAGCCATGTCAAc
tgagtatcaaaaaaccttgaaaagtgccaaaatttttgccaaaatacttt
gaaaaaccactttaaaaagaccaaaaaaaccttgaaaaccttgaaaatcc
tgaaaaaaaaaatcgtagACACCCTGTTACAGTCCGCCGcctaaacaaaa
attcaaaaattgagaGCTGCCATATATTACTGGTATACTTGGCTACCATA
GTTTTTGCTTGCTTTCTAGCAAGGCGTGTTCTTATTTGAGAAGGCCCTTG
GGAGTCTCTgtttgaactaaaaaaattacCCAGAAAATGTGCAGGTCAGT
ATTAAAGTTTGGTtgattcttttctctttttgattTTAGATTAAACTTGG
TCATAGAACTGAAGTGAAAGATGGTAAGTAGACCACTTTAACTACAATCA
GTttcaaaatacttggcacaaaagggaaattgcccacgaaattttataac
tacaaacaatttggaagcgctctaaattagatTAGAAGGGTAGagtctga
gttttaacgctagacttaagacaagatttagacaaaattgccaatatgtt
atggcactgattgtagtatATTTGATTATATTTGTTTTACGCAACGTTAA
CACATCAAAGATTAATCGGCGTTGATGACATAGACTTCTTTTATTCAACT
TTCTGGTCAGGAAAAAGAGCGACGGAAGGTGGacagtttcaaattttttt
tactataccTACCAACCCTTGCGCCTTTATAGTCTACGTTAAAAGGAACT
GTTTTCGAGTTTGAATACAATAGTATTTTGATGTGGCGCAAGGAAGAATT
GGTTTCACAAATTGAAGGGAAACTATTCTGTTCTATTGTTTTTCCCTATA
ATctcattttttaatatttttaacaatatAGGGATCAATCGAACAGCGCT
GAGAGAAATCAAATTATTACAAGAGATTAGTCACNcgactaagttttggc
cgataaggtatttgatTTTATTCGTTTTACGCAACGTTAACACATCAAAG
ATTAATCGGCGTTGATGGCATAGACCACTTTTATTCAACTTTCTGGCTAA
CCTTGGTCAGGAAAAAGAGCGACGGAAGGTGGacagtttcaatttttttt
ttactatacctACAACCCTTACGCCTTATTCTACGTTAAAAGGAACTGTT
TCGAGTTTGAATACAATAGTATTTTGATGTGGCGCAAGGAAGAATTGGTT
TCACAAATTAAAGGGATACTTTTCTGTTCTATTGTTTTCCCCTATAATCT
CATTTTTTAATATCTTTAACAATATAGGGATCAATCGAACAGCGCTGAGA
GAAATCAAATTATTACAAGAGATTAGTCACCCTAATATCATTGGGGTAAG
ATTATTCAAATCATTCAAAGCTATAATTTAACATTCTTTCACTTTCCCAC
TCCCCTGGTTATTCGTCAGTCATTTGGAAATCCAGTTTTCGCAGTTAATT
CTTTGCCACCGCTCTTATGAGGCTTAACAGggtcggatacagagggaggc
tataaccaatggaggagagtgcactttattatcgtattaccttatatgga
aactaattactcttcatgaataagatagcctacctcctgtatccgaccct
gctTAATTTGGGCAAAATCAGATATTCAAAATGATTCTGAGATTTtctag
agaaaaaaaaacaattttatgtgGCAGTGAAAACAATTATTTAGTCTTCA
TTGTTTTTTTACACTCCGCTAAACAATCTCTCAAATCTTTTCTCTTTTAG
CTGTTGGATGTATTTGGACACAAGTCCAGCATCAGTTTGGTTTTCGAATT
TATGGAAACAGATTTAGAGGTACATGCAAATTAGTGATTGAATGAATCTA
GTACtgcatttgaaagaaaattaagagTTGACCTTTCCTAGGGAAAGTTT
ACAAACAATTCctagattgggcttttccagaaaaaaattgaatatggggg
tggagtcgatataacattttttggaaatttacgccccggacattgtgact
tttgaacccccggacagcaggtctaaccccctggacactcaaaattaccc
ccaaacagagcaagtttacacccggacaagaaaaattttgtagatttttt
actTCCCTCCGGACACAATATCCATACTCCCCCCCCCCTCATTTCCAGAA
AAGCCCATTTTAGTTCCTGAAAACCTGAGAACAAAGGAGTTTCACACTAA
AAGGCTCATGATCATGATTTTTTCCAGGTCATAGCGAAAGATACATCACT
AGTACTCAGTCCCCCACACATCAAGAGCTTCGTTCTGATGACCATACAAG
GATTGGAATACTTGCACCAACATTGGATTCTCCACAGGGTTCGTATATCA
ACTCTAACGTCCCGAATAAAAACCCTGTTTATCTATTTTCTATCACAAGC
tgaattgctctaaatagcctgttTTTAGCctataattaccttattttaCG
GGTTCCGGAGGTAGAAATTCGGACCCCCTTTTTGTTCCGAGCCTCCTACT
ATTTGGGACCTTAGAGTAGCTCGTGTGTCAAGCTCCTCTAGCCCGAAATT
AGTTCATAAACTACAAGTGAGTCTCCATAAGCACGGACGAGGAACACaca
tttgttcgaattaaggaaatctccagttatagaggttcgagttcaAGAGA
CTCTAATATGCGTTAGAGCCGATATTTACTGGAAAGTTGAAAGCAATTTC
TTTCAAAGGGTCTGTTTTAATGTTTGTGGCACCTCAGCCCACACCTGCAA
CGAAGAACTGAGGCATTTTTTCACGGAAAAACTTGATAATTAGAAAACTT
CatgatgttcatgacgtaatgtttaaatGCGAAAGCTCCGAAAATAGCTT
GGGCGATTGCCAcaagttttattgtttaaattcaaaactagTTGGAAACA
CCCGGTCTTCTTgaggtgtttccgtataaaatattacgtcatgagAATAT
AACGAATACACACGGTgcaaagtaagtaagtaacaACAAATTCTTCTTCT
AAGAATTGCTTAATTTCTCAGCACTCGATCAGAAAAACTAATCGGCATGA
TACCCAGTTTACGTCAAATCTCGTAACAAATTTCACAGGATTTCGAACTT
TCCTACGGTTTTGCCCCCTAAATGTATTTATATTATCTTTGTAGGATATG
AAGCCGAATAACTTGCTGCTAGATCCAAGCGGTGTCTTGaaagttggtga
ttttggtttAGCTAAGGTGTACGGCTCGCCCAATCGTGTTTACACGCATC
AAGTAGTCACAAGGTATgagcatagtcattataaaaaaacccggtctggc
aatgtattgtgttagctttttgttcaattttcttttgttacaaacaaaag
acaagttgcaattggtatactttttgatcacgttacca

Coding sequence (CDS) from alignment at scaffold_284:190718..198055+

>TCONS_00056846 ID=TCONS_00056846|Name=TCONS_00056846|organism=Clytia hemisphaerica|type=CDS|length=4074bp|location=Sequence derived from alignment at scaffold_284:190718..198055+ (Clytia hemisphaerica)
ATGGACGAGAAGATCAAAGATCGATCTAAAAGATACAAGAAAACTGACTT
CCTCGGTGAAGGCCAGTTTGCTACCGTCTATAAAGCTGAAGATTTGGAAA
ATGATAATCAAATTGTTGCCGTTAAAAAGATTAAACTTGGTCATAGAACT
GAAGTGAAAGATGGGATCAATCGAACAGCGCTGAGAGAAATCAAATTATT
ACAAGAGATTAGTCACCCTAATATCATTGGGCTGTTGGATGTATTTGGAC
ACAAGTCCAGCATCAGTTTGGTTTTCGAATTTATGGAAACAGATTTAGAG
GTCATAGCGAAAGATACATCACTAGTACTCAGTCCCCCACACATCAAGAG
CTTCGTTCTGATGACCATACAAGGATTGGAATACTTGCACCAACATTGGA
TTCTCCACAGGGATATGAAGCCGAATAACTTGCTGCTAGATCCAAGCGGT
GTCTTGaaagttggtgattttggtttAGCTAAGGTGTACGGCTCGCCCAA
TCGTGTTTACACGCATCAAGTAGTCACAAGGTATgagcatagtcattata
aaaaaacccggtctggcaatgtattgtgttagATGGACGAGAAGATCAAA
GATCGATCTAAAAGATACAAGAAAACTGACTTCCTCGGTGAAGGCCAGTT
TGCTACCGTCTATAAAGCTGAAGATTTGGAAAATGATAATCAAATTGTTG
CCGTTAAAAAGATTAAACTTGGTCATAGAACTGAAGTGAAAGATGGGATC
AATCGAACAGCGCTGAGAGAAATCAAATTATTACAAGAGATTAGTCACCC
TAATATCATTGGGCTGTTGGATGTATTTGGACACAAGTCCAGCATCAGTT
TGGTTTTCGAATTTATGGAAACAGATTTAGAGGTCATAGCGAAAGATACA
TCACTAGTACTCAGTCCCCCACACATCAAGAGCTTCGTTCTGATGACCAT
ACAAGGATTGGAATACTTGCACCAACATTGGATTCTCCACAGGGATATGA
AGCCGAATAACTTGCTGCTAGATCCAAGCGGTGTCTTGaaagttggtgat
tttggtttAGCTAAGGTGTACGGCTCGCCCAATCGTGTTTACACGCATCA
AGTAGTCACAAGGTATgagcatagtcattataaaaaaacccggtctggca
atgtattgtgttagATGGACGAGAAGATCAAAGATCGATCTAAAAGATAC
AAGAAAACTGACTTCCTCGGTGAAGGCCAGTTTGCTACCGTCTATAAAGC
TGAAGATTTGGAAAATGATAATCAAATTGTTGCCGTTAAAAAGATTAAAC
TTGGTCATAGAACTGAAGTGAAAGATGGGATCAATCGAACAGCGCTGAGA
GAAATCAAATTATTACAAGAGATTAGTCACCCTAATATCATTGGGCTGTT
GGATGTATTTGGACACAAGTCCAGCATCAGTTTGGTTTTCGAATTTATGG
AAACAGATTTAGAGGTCATAGCGAAAGATACATCACTAGTACTCAGTCCC
CCACACATCAAGAGCTTCGTTCTGATGACCATACAAGGATTGGAATACTT
GCACCAACATTGGATTCTCCACAGGGATATGAAGCCGAATAACTTGCTGC
TAGATCCAAGCGGTGTCTTGaaagttggtgattttggtttAGCTAAGGTG
TACGGCTCGCCCAATCGTGTTTACACGCATCAAGTAGTCACAAGGTATga
gcatagtcattataaaaaaacccggtctggcaatgtattgtgttagATGG
ACGAGAAGATCAAAGATCGATCTAAAAGATACAAGAAAACTGACTTCCTC
GGTGAAGGCCAGTTTGCTACCGTCTATAAAGCTGAAGATTTGGAAAATGA
TAATCAAATTGTTGCCGTTAAAAAGATTAAACTTGGTCATAGAACTGAAG
TGAAAGATGGGATCAATCGAACAGCGCTGAGAGAAATCAAATTATTACAA
GAGATTAGTCACCCTAATATCATTGGGCTGTTGGATGTATTTGGACACAA
GTCCAGCATCAGTTTGGTTTTCGAATTTATGGAAACAGATTTAGAGGTCA
TAGCGAAAGATACATCACTAGTACTCAGTCCCCCACACATCAAGAGCTTC
GTTCTGATGACCATACAAGGATTGGAATACTTGCACCAACATTGGATTCT
CCACAGGGATATGAAGCCGAATAACTTGCTGCTAGATCCAAGCGGTGTCT
TGaaagttggtgattttggtttAGCTAAGGTGTACGGCTCGCCCAATCGT
GTTTACACGCATCAAGTAGTCACAAGGTATgagcatagtcattataaaaa
aacccggtctggcaatgtattgtgttagATGGACGAGAAGATCAAAGATC
GATCTAAAAGATACAAGAAAACTGACTTCCTCGGTGAAGGCCAGTTTGCT
ACCGTCTATAAAGCTGAAGATTTGGAAAATGATAATCAAATTGTTGCCGT
TAAAAAGATTAAACTTGGTCATAGAACTGAAGTGAAAGATGGGATCAATC
GAACAGCGCTGAGAGAAATCAAATTATTACAAGAGATTAGTCACCCTAAT
ATCATTGGGCTGTTGGATGTATTTGGACACAAGTCCAGCATCAGTTTGGT
TTTCGAATTTATGGAAACAGATTTAGAGGTCATAGCGAAAGATACATCAC
TAGTACTCAGTCCCCCACACATCAAGAGCTTCGTTCTGATGACCATACAA
GGATTGGAATACTTGCACCAACATTGGATTCTCCACAGGGATATGAAGCC
GAATAACTTGCTGCTAGATCCAAGCGGTGTCTTGaaagttggtgattttg
gtttAGCTAAGGTGTACGGCTCGCCCAATCGTGTTTACACGCATCAAGTA
GTCACAAGGTATgagcatagtcattataaaaaaacccggtctggcaatgt
attgtgttagATGGACGAGAAGATCAAAGATCGATCTAAAAGATACAAGA
AAACTGACTTCCTCGGTGAAGGCCAGTTTGCTACCGTCTATAAAGCTGAA
GATTTGGAAAATGATAATCAAATTGTTGCCGTTAAAAAGATTAAACTTGG
TCATAGAACTGAAGTGAAAGATGGGATCAATCGAACAGCGCTGAGAGAAA
TCAAATTATTACAAGAGATTAGTCACCCTAATATCATTGGGCTGTTGGAT
GTATTTGGACACAAGTCCAGCATCAGTTTGGTTTTCGAATTTATGGAAAC
AGATTTAGAGGTCATAGCGAAAGATACATCACTAGTACTCAGTCCCCCAC
ACATCAAGAGCTTCGTTCTGATGACCATACAAGGATTGGAATACTTGCAC
CAACATTGGATTCTCCACAGGGATATGAAGCCGAATAACTTGCTGCTAGA
TCCAAGCGGTGTCTTGaaagttggtgattttggtttAGCTAAGGTGTACG
GCTCGCCCAATCGTGTTTACACGCATCAAGTAGTCACAAGGTATgagcat
agtcattataaaaaaacccggtctggcaatgtattgtgttagATGGACGA
GAAGATCAAAGATCGATCTAAAAGATACAAGAAAACTGACTTCCTCGGTG
AAGGCCAGTTTGCTACCGTCTATAAAGCTGAAGATTTGGAAAATGATAAT
CAAATTGTTGCCGTTAAAAAGATTAAACTTGGTCATAGAACTGAAGTGAA
AGATGGGATCAATCGAACAGCGCTGAGAGAAATCAAATTATTACAAGAGA
TTAGTCACCCTAATATCATTGGGCTGTTGGATGTATTTGGACACAAGTCC
AGCATCAGTTTGGTTTTCGAATTTATGGAAACAGATTTAGAGGTCATAGC
GAAAGATACATCACTAGTACTCAGTCCCCCACACATCAAGAGCTTCGTTC
TGATGACCATACAAGGATTGGAATACTTGCACCAACATTGGATTCTCCAC
AGGGATATGAAGCCGAATAACTTGCTGCTAGATCCAAGCGGTGTCTTGaa
agttggtgattttggtttAGCTAAGGTGTACGGCTCGCCCAATCGTGTTT
ACACGCATCAAGTAGTCACAAGGTATgagcatagtcattataaaaaaacc
cggtctggcaatgtattgtgttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035809XLOC_035809Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056846-proteinTCONS_00056846-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056846-exon-scaffold_284-1491911889:190718..190910TCONS_00056846-exon-scaffold_284-1491911889:190718..190910Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1510915933:190718..190910TCONS_00056846-exon-scaffold_284-1510915933:190718..190910Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1575043694:190718..190910TCONS_00056846-exon-scaffold_284-1575043694:190718..190910Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1491911889:191538..191600TCONS_00056846-exon-scaffold_284-1491911889:191538..191600Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1510915933:191538..191600TCONS_00056846-exon-scaffold_284-1510915933:191538..191600Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1575043694:191538..191600TCONS_00056846-exon-scaffold_284-1575043694:191538..191600Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1491911889:195007..195040TCONS_00056846-exon-scaffold_284-1491911889:195007..195040Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1510915933:195007..195040TCONS_00056846-exon-scaffold_284-1510915933:195007..195040Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1575043694:195007..195040TCONS_00056846-exon-scaffold_284-1575043694:195007..195040Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1491911889:195945..196012TCONS_00056846-exon-scaffold_284-1491911889:195945..196012Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1510915933:195945..196012TCONS_00056846-exon-scaffold_284-1510915933:195945..196012Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1575043694:195945..196012TCONS_00056846-exon-scaffold_284-1575043694:195945..196012Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1491911889:196418..196486TCONS_00056846-exon-scaffold_284-1491911889:196418..196486Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1510915933:196418..196486TCONS_00056846-exon-scaffold_284-1510915933:196418..196486Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1575043694:196418..196486TCONS_00056846-exon-scaffold_284-1575043694:196418..196486Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1491911889:196895..197005TCONS_00056846-exon-scaffold_284-1491911889:196895..197005Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1510915933:196895..197005TCONS_00056846-exon-scaffold_284-1510915933:196895..197005Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1575043694:196895..197005TCONS_00056846-exon-scaffold_284-1575043694:196895..197005Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1491911889:197812..198055TCONS_00056846-exon-scaffold_284-1491911889:197812..198055Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1510915933:197812..198055TCONS_00056846-exon-scaffold_284-1510915933:197812..198055Clytia hemisphaericaexon
TCONS_00056846-exon-scaffold_284-1575043694:197812..198055TCONS_00056846-exon-scaffold_284-1575043694:197812..198055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:190718..198055 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
77.3947	75.8457	57.8836	47.027	15.2577	10.0761	20.17	20.9235	25.3684	19.7562	15.7203	21.9895	20.0187	20.4628	28.6611	31.7195	31.8852	32.6406	15.1485	17.1495	21.9559	25.871	56.1671	53.5418	38.3512	39.1265	25.2325	22.0275	32.1881	31.9196
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00056846 vs. Swiss-Prot (Human)
Match: CDK7 (Cyclin-dependent kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 8.355e-100
Identity = 142/178 (79.78%), Postives = 161/178 (90.45%), Query Frame = 2 
Query:  128 MDEKIKDRSKRYKKTDFLGEGQFATVYKAEDLENDNQIVAVKKIKLGHRTEVKDGINRTALREIKLLQEISHPNIIGLLDVFGHKSSISLVFEFMETDLEVIAKDTSLVLSPPHIKSFVLMTIQGLEYLHQHWILHRDMKPNNLLLDPSGVLKVGDFGLAKVYGSPNRVYTHQVVTRY 661
            M   +K R+KRY+K DFLGEGQFATVYKA D +N NQIVA+KKIKLGHR+E KDGINRTALREIKLLQE+SHPNIIGLLD FGHKS+ISLVF+FMETDLEVI KD SLVL+P HIK+++LMT+QGLEYLHQHWILHRD+KPNNLLLD +GVLK+ DFGLAK +GSPNR YTHQVVTR+
Sbjct:    1 MALDVKSRAKRYEKLDFLGEGQFATVYKARD-KNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRW 177
The following BLAST results are available for this feature:
BLAST of TCONS_00056846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDK78.355e-10079.78Cyclin-dependent kinase 7 OS=Homo sapiens GN=CDK7 ... [more]
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