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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056845 ID=TCONS_00056845|Name=TCONS_00056845|organism=Clytia hemisphaerica|type=transcript|length=343bp
TTTAGATATGAAAAAGCAatgaaacattaaaaacaaactgataagaagta
aataaataaatacacGCTTGGGTTATGGGAATGGATTCTTGAAAGAGCGG
TACTGGTTGGTATAAAATCAAAGAGGAATGGACGAGAAGATCAAAGATCG
ATCTAAAAGATACAAGAAAACTGACTTCCTCGGTGAAGGCCAGTTTGCTA
CCGTCTATAAAGCTGAAGATTTGGAAAATGATAATCAAATTGTTGCCGTT
AAAAAGATTAAACTTGGTCATAGAACTGAAGTGAAAGATGGGATCAATCG
AACAGCGCTGAGAGAAATCAAATTATTACAAGAGATTAGTCAC Run BLAST on NCBI transcript from alignment at scaffold_284:190718..195601+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056845 ID=TCONS_00056845|Name=TCONS_00056845|organism=Clytia hemisphaerica|type=transcript|length=4884bp|location=Sequence derived from alignment at scaffold_284:190718..195601+ (Clytia hemisphaerica)
TTTAGATATGAAAAAGCAatgaaacattaaaaacaaactgataagaagta
aataaataaatacacGCTTGGGTTATGGGAATGGATTCTTGAAAGAGCGG
TACTGGTTGGTATAAAATCAAAGAGGAATGGACGAGAAGATCAAAGATCG
ATCTAAAAGATACAAGAAAACTGACTTCCTCGGTGAAGGCCAGGtacgcg
ttttttataagaacaaactatataagaacataagggttcgatagccaaaa
tattagGAATAAgttcagaacataaaatattcacaaaatggtgaaaaaag
aactttttattgacattaacaaaaagttaaaaaaatacgatggcattgaa
aattttggatgttgtaACAAAACGTGTAATAAACAAGTATTTcgaaatgt
tcttatttcttcCACTGAGGTCGGATTCATTGGAATAAGTGTATTTtgaa
cacgttttttataagaagaaactacataagaacataaggcttcaatggcc
aaaatattaagaacaggtTAAGGACATTTAAGGTATTGTATGGTCcacac
ctattttcttaggaaagtggacaaaaatacccacaaaatggagaaaataa
gaacatgttaagaacattcaatgcttaaaactaaaaaagtttgcgtccaa
aggctttaaaaattttgatgttcttataaaaaaacgtttgtATTTATTCA
TCTATGGTTCTTGCAGAAAGGCTGAAAGATTTAAATATTTAAGGAACGAA
ATTTCTTTCCACTTATTGTGAGAGACGATTCCGACTTGgttttcaatgat
tttgttAATTCTCTGTTTAGTTTGCTACCGTCTATAAAGCTGAAGATTTG
GAAAATGATAATCAAATTGTTGCCGTTAAAAAGGTATCTCAACTTGACTA
CTGTATTGCATGAAAATTTCGCGGCatgaaaatttcgcggtttttttaca
gaaaattgcATTTCCTGGCATGAAAATTTCGCGGTCGAGCTCCAAAATAA
AGTAGATAGTGTTCAGAATTTGATTATGCCAGTGTTTTGAATAGTTTCTA
GTTTAAATTCGCTACCGTACTGTATGATTTGATTATAATTAAAAATAAGT
TCACTTTCTTTCTATCACGGGAAGAcgagttaaaggttttatttttacat
aagtgttccgtttcatatcaggacattGTCTTGCTATTATTATATACTGA
TTATAAGCAAAcagatgtttttattttcctttttctggcCAAtgttgctc
cacatctgtgtcaatccaatgtgaaaaagcttctAAATAGCGCgacgcgc
tgaatctaaaaatagattttattttctacataatcattactctcgatgta
tttgtacgagttccaatcccatcaacctttgcgttaatctcttttgcacg
ttaattgcattgtttgacaaaagatatattataacagcttgcacgtatct
ttaattgagccgcgttgaattgtgggattgcaactcgtacaaatctCAAA
Aagagtgaaaagtaataattatgacgtatgcgttgcggagcgctattgaa
ATTGATGAAGCAAACGAAGTCACTCTtaattaaaacaataaaaaaataaa
aacaatacctttaaaaatatgttttgttttaaaaataagaGTGGATATCG
TTTActaactcgtcaattttaagCTTTATCACACTGaattgacatggatg
tggagcaagattggttgtagaaaaaggcaaagaaaaacattttttcttta
ttcagcacaatataacaataggcagtagacactgtcctgaaatgaaatat
gtgtctggtaTGAAACGAGAACatttatataaaaatgaaaCCTTTTAACA
TGCCTTGCAGATAACAAAAAAAATACTATGAGTTGAATGGTataatgaaa
aatcaaaaaccaacATAAAAACAGNAATAACAGTCAATATGATTAAgaag
aattaactttctttacaattttaatgacgttaaagttattgagaattgtt
tttgtaaaagtgattcataaaagatgtctcatgacaattaatagGACACA
Gagaaaaactttgataaacattgcaaatttaataacacacacaagaactt
tctttctatagaagtggtacgaattgatacttttttccggacaccctgta
taacaATAGATCTAGTGGTAAGCTGTAAAGAACACTGTGAAAGTATGCTT
TACTTACACATAAACGGTTTAGTAGCTAATGTaaagtttctaaaaaattc
tctgtttttaaaataattttgattccccaaagcaatagcgctccgcaacg
catacgtcataattattacttttcacccttttttgacatttgtacgagtt
gcaatcccacaattcaacgcggctcaattaaagatacgtgtaAGCTGTTA
TATATATTTTGTCAAACGatcaattaacgtgcaaaagagattaatgcaaa
ggttgatgggattaaaactcgtacaaacacatcgagagtaatgattatgt
caaaaataaaatctatttttaaactcagcgcggtgcgctattgcAATACC
TAATTCTCATATAAAAACATCGCCTAATCTATTTTCtacctttcaaaaaa
aaactagaatttAGGAAACTATTTTAcacagggtgtctacgggaccttga
aaaccttgaaaaccttgaaaatgaaccacccaacctttgaaaaccttgaa
aactatcaattttctgggaaaaaccttgaaaaccttgaaaaatcgttaaa
aaccttgaaaaaaacttcttccTATTCATCCTTTTTGTCATACAATTTTT
CAATAGGGCAGTGGCTGAGTAACTCTTACTTATAGGTTCAGATTAGTTTT
GAGATTGAATGCTCTTATCTTTGAGTGCTAgacttttttcattcattacC
GCATACTATATTATGTTGGTTATATTATCATGAAAATATAAAGTACTGGA
CCTGTATCTCgactttgtatttttgtaataggcactgctagcttcgttgc
ctcctcttaaaaacataaaatgaacaatgaattttgataatgtacctctt
gggaataccttgctaacgaCGTCAAAGCTtggacaaaagtctctgttgtt
ctactcttcacAAGTCATTTATCTATATcatccgactaatatttctaaat
tctGTCTCAAAAGTAATAATTTCAGATAGTTTGTGGTTCAAATTATGATA
TTTGTaagacacaggctctcaactttggcttACTATTTTTTTAAGTCATA
aaaaaagtgattcaaaagtatacacgcagttaaaattctgaattttagcg
GTGAAAAACGTTTATAAGATATTATAGCAAacttatgaaaatattttgtc
aaatttcgcCAGCTCAATactctaaaaaaaaaattcgccgGTCTCGAAAA
TCTAACCAGACAttcaaaaagtaagaataatAAGTATGTTCCTAAACTGT
TTGTCATGaggaaatttccaaaaaacctTTATAACATTTAGAGAATTACA
CCTGTTTCTATAGCGATTCTGTCGCAACGAGTGCAACATATACTTTTATC
ATTAGCTGAGTTTTTATCACTCATAGTCCGTTTGCATGAGCCCTAAGAAA
TCGACTgttccccaattttcaaatcgcttcaggGCCGTTCATCAATAAAT
AATTTccttaaaacaactctttttttgaaagagtcaaaatcaattttttt
tcttttcggcGCCTCGTCGGTCACTGTAAACATTTGGTTTTTGCttatat
ttctttatttctacagttgAAAGACTAGGGAGCTGGAGACAAAAACTCTT
TTTGTGGTATGGTTCTAGAGAGGGAGATAGGAATTTAACTGTGGAAATAA
TTCCCCGGCCACCAAAAGCGGATAAATTTTATTGCCgtcctctatttttc
tttcgcctgccactctgaaaaaaaaaatcactgtaGAGAGCCATGTCAAc
tgagtatcaaaaaaccttgaaaagtgccaaaatttttgccaaaatacttt
gaaaaaccactttaaaaagaccaaaaaaaccttgaaaaccttgaaaatcc
tgaaaaaaaaaatcgtagACACCCTGTTACAGTCCGCCGcctaaacaaaa
attcaaaaattgagaGCTGCCATATATTACTGGTATACTTGGCTACCATA
GTTTTTGCTTGCTTTCTAGCAAGGCGTGTTCTTATTTGAGAAGGCCCTTG
GGAGTCTCTgtttgaactaaaaaaattacCCAGAAAATGTGCAGGTCAGT
ATTAAAGTTTGGTtgattcttttctctttttgattTTAGATTAAACTTGG
TCATAGAACTGAAGTGAAAGATGGTAAGTAGACCACTTTAACTACAATCA
GTttcaaaatacttggcacaaaagggaaattgcccacgaaattttataac
tacaaacaatttggaagcgctctaaattagatTAGAAGGGTAGagtctga
gttttaacgctagacttaagacaagatttagacaaaattgccaatatgtt
atggcactgattgtagtatATTTGATTATATTTGTTTTACGCAACGTTAA
CACATCAAAGATTAATCGGCGTTGATGACATAGACTTCTTTTATTCAACT
TTCTGGTCAGGAAAAAGAGCGACGGAAGGTGGacagtttcaaattttttt
tactataccTACCAACCCTTGCGCCTTTATAGTCTACGTTAAAAGGAACT
GTTTTCGAGTTTGAATACAATAGTATTTTGATGTGGCGCAAGGAAGAATT
GGTTTCACAAATTGAAGGGAAACTATTCTGTTCTATTGTTTTTCCCTATA
ATctcattttttaatatttttaacaatatAGGGATCAATCGAACAGCGCT
GAGAGAAATCAAATTATTACAAGAGATTAGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056845-exon-scaffold_284-1491911889:190718..190910 | TCONS_00056845-exon-scaffold_284-1491911889:190718..190910 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1510915933:190718..190910 | TCONS_00056845-exon-scaffold_284-1510915933:190718..190910 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1575043694:190718..190910 | TCONS_00056845-exon-scaffold_284-1575043694:190718..190910 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1491911889:191538..191600 | TCONS_00056845-exon-scaffold_284-1491911889:191538..191600 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1510915933:191538..191600 | TCONS_00056845-exon-scaffold_284-1510915933:191538..191600 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1575043694:191538..191600 | TCONS_00056845-exon-scaffold_284-1575043694:191538..191600 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1491911889:195007..195040 | TCONS_00056845-exon-scaffold_284-1491911889:195007..195040 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1510915933:195007..195040 | TCONS_00056845-exon-scaffold_284-1510915933:195007..195040 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1575043694:195007..195040 | TCONS_00056845-exon-scaffold_284-1575043694:195007..195040 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1491911889:195549..195601 | TCONS_00056845-exon-scaffold_284-1491911889:195549..195601 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1510915933:195549..195601 | TCONS_00056845-exon-scaffold_284-1510915933:195549..195601 | Clytia hemisphaerica | exon |
| TCONS_00056845-exon-scaffold_284-1575043694:195549..195601 | TCONS_00056845-exon-scaffold_284-1575043694:195549..195601 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:190718..195601 + |
Blast
BLAST of TCONS_00056845 vs. Swiss-Prot (Human)
Match: CDK7 (Cyclin-dependent kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.952e-32 Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 2
Query: 128 MDEKIKDRSKRYKKTDFLGEGQFATVYKAEDLENDNQIVAVKKIKLGHRTEVKDGINRTALREIKLLQEISH 343
M +K R+KRY+K DFLGEGQFATVYKA D +N NQIVA+KKIKLGHR+E KDGINRTALREIKLLQE+SH
Sbjct: 1 MALDVKSRAKRYEKLDFLGEGQFATVYKARD-KNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH 71
The following BLAST results are available for this feature:
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