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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056827 ID=TCONS_00056827|Name=TCONS_00056827|organism=Clytia hemisphaerica|type=transcript|length=2708bpRun BLAST on NCBI protein sequence of TCONS_00056827-protein >TCONS_00056827-protein ID=TCONS_00056827-protein|Name=TCONS_00056827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp FSKIKMNTKRILLLVILSATFLQCRKLKKVVTKKSETFNDETNNFILQKRRun BLAST on NCBI transcript from alignment at scaffold_283:105680..119693- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056827 ID=TCONS_00056827|Name=TCONS_00056827|organism=Clytia hemisphaerica|type=transcript|length=14014bp|location=Sequence derived from alignment at scaffold_283:105680..119693- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_283:105680..119693- >TCONS_00056827 ID=TCONS_00056827|Name=TCONS_00056827|organism=Clytia hemisphaerica|type=CDS|length=10536bp|location=Sequence derived from alignment at scaffold_283:105680..119693- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056827 vs. Swiss-Prot (Human)
Match: QPCT (Glutaminyl-peptide cyclotransferase OS=Homo sapiens GN=QPCT PE=1 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 4.254e-55 Identity = 130/395 (32.91%), Postives = 194/395 (49.11%), Query Frame = 3
Query: 144 QKRLHKLKEYSQKATKRLAALSDYSNFYNKYLTEILRSRVPGTVGHARVKNFIIRKLQ--EYNWDVKTQNFTMWTPLGPKNFTNIIGTLNPRADRVLALAAHYDSKILPVVNGKFFTAATDSAVPCAMLLDFARDLSDKA---KEITSTLEQVSPQLLFLDGEEAFVEWTKTDSIYGSRYMAASMSNASHWNPKLALHEISQLDSMDAFVLLDLLGAKDPTFYNWFPTTSRLYESLKKIEKNLRAEGQLFGVNHKXFHFIFFYXXXXXXXXXXXXXGAKDPTFYNWFPTTSRLYESLKKIEKNLRAEGQLFGVNHKHYSGHYFTGQRPEDIGIYGKIDDDHVPFMQKGVPILHIIPYPFPSTWHTLNDDEEHLDPTTIEDLLKIFRHFIFSYFSL 1313
+K H+ + A +++A + S + L +L R PG+ G + I++++Q + +W ++ F TP G ++F+NII TLNP A R L LA HYDSK N + F ATDSAVPCAM+L+ AR L K K ++ + +S QL+F DGEEAF+ HW+P+ +L+ L + + P R QL G++ VLLDL+GA +PTF N+FP ++R +E L+ IE L G L H G+ ++ G I DDH+PF+++GVP+LH+IP PFP WHT++D+EE+LD +TI++L KI + F+ Y L
Sbjct: 39 EKNYHQPAILNSSALRQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFL----------------------HWSPQDSLYGSRHLAA-------KMASTPHP--------------------PGARGTSQLHGMD---------------LLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLL--------KDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYLHL 361 The following BLAST results are available for this feature:
BLAST of TCONS_00056827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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