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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056787 ID=TCONS_00056787|Name=TCONS_00056787|organism=Clytia hemisphaerica|type=transcript|length=3172bpRun BLAST on NCBI protein sequence of TCONS_00056787-protein >TCONS_00056787-protein ID=TCONS_00056787-protein|Name=TCONS_00056787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp LSFFVFLFQGVVSDTVMDFFSKSHTVKPLSKSNLTLIEVDEDLESLSKETRun BLAST on NCBI transcript from alignment at scaffold_282:450456..463533- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056787 ID=TCONS_00056787|Name=TCONS_00056787|organism=Clytia hemisphaerica|type=transcript|length=13078bp|location=Sequence derived from alignment at scaffold_282:450456..463533- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_282:450456..463533- >TCONS_00056787 ID=TCONS_00056787|Name=TCONS_00056787|organism=Clytia hemisphaerica|type=CDS|length=40470bp|location=Sequence derived from alignment at scaffold_282:450456..463533- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056787 vs. Swiss-Prot (Human)
Match: DNLI3 (DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2) HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0 Identity = 309/493 (62.68%), Postives = 380/493 (77.08%), Query Frame = 1
Query: 19 LFQGVVSDTVMDFFSKSHTVKPLSKSNLTLIEVDEDLESLSKETKEDAQTAILKKISKKCTTDDLCYIVRLIKHDLRTNCGAKHFLDALDENAYEAWQASSDLKQVIEKWQANKDESSMIPGLKKTISIKATLMTPVKPMLAEACKSIEQAFKKCPNGMYSEIKYDGERVQIHKDGEKFQYFSRSLKPVQPHKIAEVKDFIPKACPQGESLILDGEVLLMDSNTNQPLPFGTLGIHKKAKFKDATVCYVIFDILQFNDENLMKRSVQERRKILQDNVTEIPGRIVHSEMKVVTKKQELQSMLKKCFAQNLEGLVLKDIKGKYEPGKRHWLKVKKDYLQKGAMADTADLVVLGAYIGTGNKGGLMSVFLMGCYDESRGIWVTVTKCGNGHDDDTXXXXXXXXXXXXISKDFSKVPMWLDVDRGLVPDYVIADPKNSQIWEITGAEFSQSSTHTADGISIRFPRVTRIRNDKDWKTATSLKRLKVLYKESKETTD 1497
L QG VS+T+ FF +S + P +KS LT+ EVDE L LSK TKED Q L+ I+ +CT +DL I+RLIKHDL+ N GAKH LDALD NAYEA++AS +L+ V+E+ N E PG ++ +S++A+LMTPV+PMLAEACKS+E A KKCPNGM+SEIKYDGERVQ+HK+G+ F YFSRSLKPV PHK+A KD+IP+A P G S+ILD EVLL+D+ T +PLPFGTLG+HKKA F+DA VC +FD + FND +LM R + ERRK L DN+ EIP RI+ SEMK VTK +L M+ + + LEGLVLKD+KG YEPGKRHWLKVKKDYL +GAMADTADLVVLGA+ G G+KGG+MS+FLMGCYD W TVTKC GHDD TL +LQ +L M KISKD SK+P WL V++ PD+++ DPK + +WEITGAEFS+S HTADGISIRFPR TRIR+DKDWK+AT+L +LK LY+ SKE D
Sbjct: 345 LEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKAD 837 The following BLAST results are available for this feature:
BLAST of TCONS_00056787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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