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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056781 ID=TCONS_00056781|Name=TCONS_00056781|organism=Clytia hemisphaerica|type=transcript|length=1712bpRun BLAST on NCBI protein sequence of TCONS_00056781-protein >TCONS_00056781-protein ID=TCONS_00056781-protein|Name=TCONS_00056781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp MPTKNKAVNTKLRGDVSHTVSLDYEEELSSSKKTSMPNKETPTKTTTKTTRun BLAST on NCBI transcript from alignment at scaffold_282:323354..332222- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056781 ID=TCONS_00056781|Name=TCONS_00056781|organism=Clytia hemisphaerica|type=transcript|length=8869bp|location=Sequence derived from alignment at scaffold_282:323354..332222- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_282:323354..332222- >TCONS_00056781 ID=TCONS_00056781|Name=TCONS_00056781|organism=Clytia hemisphaerica|type=CDS|length=19908bp|location=Sequence derived from alignment at scaffold_282:323354..332222- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056781 vs. Swiss-Prot (Human)
Match: CASD1 (N-acetylneuraminate 9-O-acetyltransferase OS=Homo sapiens GN=CASD1 PE=1 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 2.324e-54 Identity = 120/405 (29.63%), Postives = 204/405 (50.37%), Query Frame = 3
Query: 528 RYEKGGQTCPLLFESGRWIQDK-WQPDGCMIHEYEPLEVQTCLQHQEVAIIGDSRMRSIYFHLADTVSEEPVKSGKKHENLYYRDKKYNLTITFYWMPELDQESGTLFKSWIE-SGKIPHLIIMGLGTWTIK--NSKHTAVVDYQEQLKSLSPSLNHIGRNLTLQKLFTIANSKTRFHHEPQFIWLMQDPVIEDRLSIERKAITNIQIELYNYAAKKSLDPSPF-----VHIMNATTLMAAGKPDHSNDGLHYDSFIIKNKLDAILNSFCNDFVYPDDASCCRDLDHVTQLQFNTFAMLSTCVILWFLMFICRK---RRDKVVQSLSSSELERYDASSMFPWMHSEHMYTGIKAMAKLAFIILYIFLADSSLLYDKEHKTYSHAAFFVPLVIIFIVALLTRGSTK 1706
R +G +C L SGR++ +K WQP CM+H+Y+ E + CL + +A IGDSR+R +++ ++ + + G KHEN+ + DK ++ + F W PE++ K W E S PH+I+ G TW+IK N A+ Y+ + S++P L + + W++QDPV ED LS RK ITN +I+ YN AA L+ S V + + + L+A S DGLH + ++N +CN + P D SCC+ VT +Q + +I + + +I + R++K L S E ++ ++ P E + +++ KL I+ Y ++ D + L+ KE+K Y+H++FF+P++ I ++ + +TK
Sbjct: 41 RRYRGNDSCEYLLSSGRFLGEKVWQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHENIPFEDKTASVKVDFLWHPEVNGSMKQCIKVWTEDSIAKPHVIVAGAATWSIKIHNGSSEALSQYKMNITSIAPLLEKLAKT-------------------SDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAVSILNSSTRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETTAMILMNVYCNKILKPVDGSCCQPRPPVTLIQKLAACFFTLSIIGYLIFYIIHRNAHRKNKPCTDLESGEEKKNIINT--PVSSLEIL---LQSFCKLGLIMAYFYMCDRANLFMKENKFYTHSSFFIPIIYILVLGVFYNENTK 421 The following BLAST results are available for this feature:
BLAST of TCONS_00056781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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