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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056774 ID=TCONS_00056774|Name=TCONS_00056774|organism=Clytia hemisphaerica|type=transcript|length=3089bp
CTGCTGTCTGTCATGTCAAAAACTTTAACTATTCTGGCTATAACAATCTG
tatgtttattattttttttagcgaaaaaaatgtcaatgaactgaaaaaaa
taaataatggcATTCCATCAATCAAACTATTTTAGAGCATTTGTgggcat
tgttttattttttgctcTGTTCCGCTTATGTGCCCCTCTTGTTTTTCAAT
ACATGATTCAATATGTGAGACTGATTGTTTCAATGGCTAGCAAGGATGAA
GAAAGAGTTAAGAGGGCTGAAGAAATCTCTTGGGAAATGGAATACCAGTT
ACATGAAATGGACATGAGGTATTACCAACAGAAATGTAAAGAAGATAACC
GTGGCAAGGAACCTTATGCTTGGTTGACCGCAATGTTGAATGATAATTAT
GCAATAGGTGCTATCCAACTTGGTCAtatgttgaaaaaattatcTTGTTA
TCATAAATTGATTGTTTTAGTTTCTGATGGTGTGACTCCAGGAACACGAG
AAGCATTAAGAAAAGTTGGCTTTGAAGTTAAACTTGTTGAAGCACTAGAT
TGTAATTGGATGGACCGACAAAAGGGCAGGAAAGAGCGGAATTTAGGATT
ACCGGGAACTTTCATGAGATTTCATGCGTGGAATTATACCCAATATAAGA
AAATTATGTATCTAGATTCTGATGTCGTTCCTGTAGTCAGTGTTGATGAG
TTATTTGATTTGGAGACCGATTTCAATGCTGCTTATTGTGCCAGACCTGG
TATTATTGATCCATGTTTCAATGCAGGGATTATCTTGTTTAAACCGTCCA
CAAAGCATTATAATGGGTTGATGAATTTATGGGGTGATTTAACAAAAGGT
ACAGAATGTCCTAATGACCAAGTGTTATTATGGCATTATTATGCGGATCA
TGATATGTGGAATGAATTACCATACGCTTATAATGTTCGCCGTTATTTGT
ATCACCCgttgaaaatttatcatttcGCATGCTGCTTAACCAAGAAGCCC
TGGCAAGTGAAAAACAAACCCACACGTCAAGATGTCGCTAAATTTAAAGG
CCCTTTCAAGGAGCCATGGGATATGGTCATCTTATGGTGGAGATATTTTT
ACCAAGCTCTAGATGAATATAAATTGAACGAATGGTATAATGAtgtcaaa
aacaaaatatagcTTTCAAATCAACTTGAGGATACCGTTTatgtattttt
attattttaattcATAATTGTTTTTTTACTGACACCTATACCATTCTTTT
ATAAACACCCTTCTTGCTTGATACAAGTGTGCTTTTTCAACCTCAATTGA
ATTATATGTGGATAATAACGTATAACCATAGCTATTACAAATTTCTACCG
TATTAATAAGAAGTATCATACTCAATTTACAATTAATCATCACTTTTTTA
TTTAGTAGTAGGGAAATTTTTGGTGCGATTAAATTTTGAGGTCCCAGGCA
TTGCAAGATCAGAAAATTCGAGAAGCACAGAAATTTCCCGTATTGATGTA
AATATTGGAATTTTTCGAATAAAATTAGTTAAATTTGTCGAAATAGAGAA
ATAACTTTGATGTATATCtgtgtcaatatatttttgaaaattttctgtgC
AAGTTGAGTGATGGTATCACCCAGCTATCACCCAAATCCATGCTTGGTTT
ATAAAATCTAATAAGAATTTGCTGCAAAAATACTTTGTTGTTAATGATCA
AAGTGTAATATGACtctgatattttttttccagtTTCAGATACCTCAAAG
ACAAAACTAATACAAAATGGTGCggaaaaagaacagatatttggtCATCA
AAATACAGTATGCGGATGAGAAAATCGACCTTAATCTAGACAAAGATACC
ATAAAAAATACGATCAAAAACATTGTAAAAGAACTCTATGGAGAATACGG
TCAAACAACTTTTACTCAAGGGATGtatgtaaaatacacaaatccatata
ctgggaTATTTTTCTTACAAGTAGCCAGAGACTATCACCGTGAAGTACGA
ACATGTGTATCTTTCGTGAAAATGTTGCGACAAAGACTTTGTGTTTTATC
TTGTATACATGTGANATCTTTCGTGAAAATGCTGCGACAAAGACTTTGTG
TTTTATCTTGTATACATGTGACAGGGACATTGAAATCTGCTGAAAGATAT
TTGTTGGGTTATAATACCAAGAAAATGAGACTGATGTATGAGAGATGCTC
TAATCCAGTTGATAAGCAAAAAGTTTTGGATATTATTAATGGACTGGGTT
TGACAGATGTTTTACCTGGTCCTGGTATTGTTGATAGTAAAGAATTGAAA
ATGGAAGAATGACGTATTCACTTATTGCTATTTGTATGTAACAGAGAACC
ATAAATGATGTTCTGCTGGATGAGAGAGCAAATTATACGAaccatttttt
tttctgaatcgGTCAATGTATAAAATGACTTCCCTACTAATGGTCAGCGC
CTTTAAAAATGACATTATGATTGTGTTAGCTTTCAGGAGAGATATTTTAC
AGTATCTATCAATAATtatcaatctttaaaaaatggacTGTTCcataaaa
aaccatacagggggtggacgaaccttttcaagtcaaaaagaaattattga
aaatgtgtggagaacaactggaaaatggaaaaatttgcaaaaaaataccc
ttggaaaaattcttttcataccttaaagcgagggtggacgaactaacaTC
AGTCTTTAAAccactggaaattttagaataactttttacccccttggaaa
aatgaaaaaacatcccctggaaattgttctcagattaccctctggaaatg
ttcgtccaccccctgtatggatataaaatggaatagcccaatgaaTACTG
ACAAATTTTACTGAtgcgaaaaaaatattttgcattttGTCACGATtttt
aatttccatttttatgtattttaagCTAGAGAGGTTTTTTTATACAAACA
AGCAGAAAACGTCGCTTGGTTAGGATGCTTTCAGAAGACACTTTCNGGCT
AgagtttttttaatcaaaacaaGCAGAAAACGTCGCTTGGTTAGGATGCT
TTCAGAAGACACTTTCTAACCAAACATGTGGCTGTTCCT Run BLAST on NCBI protein sequence of TCONS_00056774-protein >TCONS_00056774-protein ID=TCONS_00056774-protein|Name=TCONS_00056774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MAFHQSNYFRAFVGIVLFFALFRLCAPLVFQYMIQYVRLIVSMASKDEER
VKRAEEISWEMEYQLHEMDMRYYQQKCKEDNRGKEPYAWLTAMLNDNYAI
GAIQLGHMLKKLSCYHKLIVLVSDGVTPGTREALRKVGFEVKLVEALDCN
WMDRQKGRKERNLGLPGTFMRFHAWNYTQYKKIMYLDSDVVPVVSVDELF
DLETDFNAAYCARPGIIDPCFNAGIILFKPSTKHYNGLMNLWGDLTKGTE
CPNDQVLLWHYYADHDMWNELPYAYNVRRYLYHPLKIYHFACCLTKKPWQ
VKNKPTRQDVAKFKGPFKEPWDMVILWWRYFYQALDEYKLNEWYNDVKNK
I Run BLAST on NCBI transcript from alignment at scaffold_282:189867..193025- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056774 ID=TCONS_00056774|Name=TCONS_00056774|organism=Clytia hemisphaerica|type=transcript|length=3159bp|location=Sequence derived from alignment at scaffold_282:189867..193025- (Clytia hemisphaerica)
CTGCTGTCTGTCATGTCAAAAACTTTAACTATTCTGGCTATAACAATCTG
TATGTTTATTATTTTTTTTAGCGAAAAAAATGTCAATGAACTGAAAAAAA
TAAATAATGGCATTCCATCAATCAAACTATTTTAGAGCATTTGTGGGCAT
TGTTTTATTTTTTGCTCTGTTCCGCTTATGTGCCCCTCTTGTTTTTCAAT
ACATGATTCAATATGTGAGACTGATTGTTTCAATGGCTAGCAAGGATGAA
GAAAGAGTTAAGAGGGCTGAAGAAATCTCTTGGGAAATGGAATACCAGTT
ACATGAAATGGACATGAGGTATTACCAACAGAAATGTAAAGAAGATAACC
GTGGCAAGGAACCTTATGCTTGGTTGACCGCAATGTTGAATGATAATTAT
GCAATAGGTGCTATCCAACTTGGTCATATGTTGAAAAAATTATCTTGTTA
TCATAAATTGATTGTTTTAGTTTCTGATGGTGTGACTCCAGGAACACGAG
AAGCATTAAGAAAAGTTGGCTTTGAAGTTAAACTTGTTGAAGCACTAGAT
TGTAATTGGATGGACCGACAAAAGGGCAGGAAAGAGCGGAATTTAGGATT
ACCGGGAACTTTCATGAGATTTCATGCGTGGAATTATACCCAATATAAGA
AAATTATGTATCTAGATTCTGATGTCGTTCCTGTAGTCAGTGTTGATGAG
TTATTTGATTTGGAGACCGATTTCAATGCTGCTTATTGTGCCAGACCTGG
TATTATTGATCCATGTTTCAATGCAGGGATTATCTTGTTTAAACCGTCCA
CAAAGCATTATAATGGGTTGATGAATTTATGGGGTGATTTAACAAAAGGT
ACAGAATGTCCTAATGACCAAGTGTTATTATGGCATTATTATGCGGATCA
TGATATGTGGAATGAATTACCATACGCTTATAATGTTCGCCGTTATTTGT
ATCACCCGTTGAAAATTTATCATTTCGCATGCTGCTTAACCAAGAAGCCC
TGGCAAGTGAAAAACAAACCCACACGTCAAGATGTCGCTAAATTTAAAGG
CCCTTTCAAGGAGCCATGGGATATGGTCATCTTATGGTGGAGATATTTTT
ACCAAGCTCTAGATGAATATAAATTGAACGAATGGTATAATGATGTCAAA
AACAAAATATAGCTTTCAAATCAACTTGAGGATACCGTTTATGTATTTTT
ATTATTTTAATTCATAATTGTTTTTTTACTGACACCTATACCATTCTTTT
ATAAACACCCTTCTTGCTTGATACAAGTGTGCTTTTTCAACCTCAATTGA
ATTATATGTGGATAATAACGTATAACCATAGCTATTACAAATTTCTACCG
TATTAATAAGAAGTATCATACTCAATTTACAATTAATCATCACTTTTTTA
TTTAGTAGTAGGGAAATTTTTGGTGCGATTAAATTTTGAGGTCCCAGTTT
AATTATCACAGGACCTATTTTGCTCTTTGTTGGACATAAATTTTCTCTAA
AACATTTTTACAAAAGGGCATTGCAAGATCAGAAAATTCGAGAAGCACAG
AAATTTCCCGTATTGATGTAAATATTGGAATTTTTCGAATAAAATTAGTT
AAATTTGTCGAAATAGAGAAATAACTTTGATGTATATCTGTGTCAATATA
TTTTTGAAAATTTTCTGTGCAAGTTGAGTGATGGTATCACCCAGCTATCA
CCCAAATCCATGCTTGGTTTATAAAATCTAATAAGAATTTGCTGCAAAAA
TACTTTGTTGTTAATGATCAAAGTGTAATATGACTCTGATATTTTTTTTC
CAGTTTCAGATACCTCAAAGACAAAACTAATACAAAATGGTGCGGAAAAA
GAACAGATATTTGGTCATCAAAATACAGTATGCGGATGAGAAAATCGACC
TTAATCTAGACAAAGATACCATAAAAAATACGATCAAAAACATTGTAAAA
GAACTCTATGGAGAATACGGTCAAACAACTTTTACTCAAGGGATGTATGT
AAAATACACAAATCCATATACTGGGATATTTTTCTTACAAGTAGCCAGAG
ACTATCACCGTGAAGTACGAACATGTGTATCTTTCGTGAAAATGTTGCGA
CAAAGACTTTGTGTTTTATCTTGTATACATGTGANATCTTTCGTGAAAAT
GCTGCGACAAAGACTTTGTGTTTTATCTTGTATACATGTGACAGGGACAT
TGAAATCTGCTGAAAGATATTTGTTGGGTTATAATACCAAGAAAATGAGA
CTGATGTATGAGAGATGCTCTAATCCAGTTGATAAGCAAAAAGTTTTGGA
TATTATTAATGGACTGGGTTTGACAGATGTTTTACCTGGTCCTGGTATTG
TTGATAGTAAAGAATTGAAAATGGAAGAATGACGTATTCACTTATTGCTA
TTTGTATGTAACAGAGAACCATAAATGATGTTCTGCTGGATGAGAGAGCA
AATTATACGAACCATTTTTTTTTCTGAATCGGTCAATGTATAAAATGACT
TCCCTACTAATGGTCAGCGCCTTTAAAAATGACATTATGATTGTGTTAGC
TTTCAGGAGAGATATTTTACAGTATCTATCAATAATTATCAATCTTTAAA
AAATGGACTGTTCCATAAAAAACCATACAGGGGGTGGACGAACCTTTTCA
AGTCAAAAAGAAATTATTGAAAATGTGTGGAGAACAACTGGAAAATGGAA
AAATTTGCAAAAAAATACCCTTGGAAAAATTCTTTTCATACCTTAAAGCG
AGGGTGGACGAACTAACATCAGTCTTTAAACCACTGGAAATTTTAGAATA
ACTTTTTACCCCCTTGGAAAAATGAAAAAACATCCCCTGGAAATTGTTCT
CAGATTACCCTCTGGAAATGTTCGTCCACCCCCTGTATGGATATAAAATG
GAATAGCCCAATGAATACTGACAAATTTTACTGATGCGAAAAAAATATTT
TGCATTTTGTCACGATTTTTAATTTCCATTTTTATGTATTTTAAGCTAGA
GAGGTTTTTTTATACAAACAAGCAGAAAACGTCGCTTGGTTAGGATGCTT
TCAGAAGACACTTTCNGGCTAGAGTTTTTTTAATCAAAACAAGCAGAAAA
CGTCGCTTGGTTAGGATGCTTTCAGAAGACACTTTCTAACCAAACATGTG
GCTGTTCCT Coding sequence (CDS) from alignment at scaffold_282:189867..193025- >TCONS_00056774 ID=TCONS_00056774|Name=TCONS_00056774|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_282:189867..193025- (Clytia hemisphaerica)
ATGGCATTCCATCAATCAAACTATTTTAGAGCATTTGTGGGCATTGTTTT
ATTTTTTGCTCTGTTCCGCTTATGTGCCCCTCTTGTTTTTCAATACATGA
TTCAATATGTGAGACTGATTGTTTCAATGGCTAGCAAGGATGAAGAAAGA
GTTAAGAGGGCTGAAGAAATCTCTTGGGAAATGGAATACCAGTTACATGA
AATGGACATGAGGTATTACCAACAGAAATGTAAAGAAGATAACCGTGGCA
AGGAACCTTATGCTTGGTTGACCGCAATGTTGAATGATAATTATGCAATA
GGTGCTATCCAACTTGGTCATATGTTGAAAAAATTATCTTGTTATCATAA
ATTGATTGTTTTAGTTTCTGATGGTGTGACTCCAGGAACACGAGAAGCAT
TAAGAAAAGTTGGCTTTGAAGTTAAACTTGTTGAAGCACTAGATTGTAAT
TGGATGGACCGACAAAAGGGCAGGAAAGAGCGGAATTTAGGATTACCGGG
AACTTTCATGAGATTTCATGCGTGGAATTATACCCAATATAAGAAAATTA
TGTATCTAGATTCTGATGTCGTTCCTGTAGTCAGTGTTGATGAGTTATTT
GATTTGGAGACCGATTTCAATGCTGCTTATTGTGCCAGACCTGGTATTAT
TGATCCATGTTTCAATGCAGGGATTATCTTGTTTAAACCGTCCACAAAGC
ATTATAATGGGTTGATGAATTTATGGGGTGATTTAACAAAAGGTACAGAA
TGTCCTAATGACCAAGTGTTATTATGGCATTATTATGCGGATCATGATAT
GTGGAATGAATTACCATACGCTTATAATGTTCGCCGTTATTTGTATCACC
CGTTGAAAATTTATCATTTCGCATGCTGCTTAACCAAGAAGCCCTGGCAA
GTGAAAAACAAACCCACACGTCAAGATGTCGCTAAATTTAAAGGCCCTTT
CAAGGAGCCATGGGATATGGTCATCTTATGGTGGAGATATTTTTACCAAG
CTCTAGATGAATATAAATTGAACGAATGGTATAATGATGTCAAAAACAAA
ATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056774-exon-scaffold_282-1575043694:191580..193025 | TCONS_00056774-exon-scaffold_282-1575043694:191580..193025 | Clytia hemisphaerica | exon |
| TCONS_00056774-exon-scaffold_282-1575043694:189867..191509 | TCONS_00056774-exon-scaffold_282-1575043694:189867..191509 | Clytia hemisphaerica | exon |
| TCONS_00056774-exon-scaffold_282-1510915933:191580..193025 | TCONS_00056774-exon-scaffold_282-1510915933:191580..193025 | Clytia hemisphaerica | exon |
| TCONS_00056774-exon-scaffold_282-1510915933:189867..191509 | TCONS_00056774-exon-scaffold_282-1510915933:189867..191509 | Clytia hemisphaerica | exon |
| TCONS_00056774-exon-scaffold_282-1491911889:191580..193025 | TCONS_00056774-exon-scaffold_282-1491911889:191580..193025 | Clytia hemisphaerica | exon |
| TCONS_00056774-exon-scaffold_282-1491911889:189867..191509 | TCONS_00056774-exon-scaffold_282-1491911889:189867..191509 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:189867..193025 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029044 | Nucleotide-diphossugar_trans |
| IPR002495 | Glyco_trans_8 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016757 | transferase activity, transferring glycosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016757 |
transferase activity, transferring glycosyl groups |
Blast
BLAST of TCONS_00056774 vs. Swiss-Prot (Human)
Match: GLYG (Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4) HSP 1 Score: 104.76 bits (260), Expect = 9.044e-24 Identity = 91/290 (31.38%), Postives = 144/290 (49.66%), Query Frame = 2
Query: 368 AWLTAMLNDNYAIGAIQLGHMLKKLSCYHKLIVLVSDGVTPGTREALRKVGFEVKLVEALDCNWMDRQKGRKERNLGLPGTFMRFHAWNYTQYKKIMYLXXXXXXXXXXXELFDLETDFNAAYCARPGIIDPCFNAGIILFKPSTKHYNGLMNLWGDLTKGTECPNDQVLLWHYY---ADHDMWNELPYAYNVRR---YLYHP--------LKIYHFACCLTKKPWQVKNKPTRQDV-AKFKGPFKEPWDMVILWWRYFYQALDEYKLNEWYNDVKNKI*LSNQLEDTVY 1192
A++T ND YA GA+ LG LK+ +L+VL + V+ R+ L V EV +V+ LD K LG+ T + H W+ TQY K +++D+D + + ++D+LFD E + +AA PG D CFN+G+ +++PS + YN L++L + +G+ DQ +L ++ A D+ LP+ YN+ Y Y P K+ HF + KPW P + V ++ P + +ILWW F + L + + VK+ N L D VY
Sbjct: 5 AFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGV--TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE-ELSAA--PDPGWPD-CFNSGVFVYQPSVETYNQLLHLASE--QGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRV--KPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIF--TTNVLPLLQQFGLVKDTCSYVNVLSDLVY 282
The following BLAST results are available for this feature:
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