TCONS_00056773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056773
Unique NameTCONS_00056773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056773 ID=TCONS_00056773|Name=TCONS_00056773|organism=Clytia hemisphaerica|type=transcript|length=791bp
TCAGAATCGAATGTTGAAAACTTCATTCCATTGTGCTTGTTGCCAAAAGT
ATTTGGTTTTGAAACATTTCCAGAAGCTCCAGAGATTGTCAACATATATT
TGCTTGCTTCATCACCGACTTCAAAAATATCGTATTTTGCATAAACCATT
TTTGTTTGTCCAACCATGATCATGTTAATCAAAAGTTCGGATTTCTTTGG
TGCAACTTCTGGCTTTGTCAAGTCATGGACATTCTCATTCCCAAACCAAA
ATTCACCAGTTAACTTTCCAAAACCAAGTTTATAGTCATTCCAGTTGCGA
GTAAAGTTAACAGAGCCGTCAGTCCTTCTNCAAGTCATGGACATTCTCAT
TCCCAAACCAAAATTCACCAGTTAACTTTCCAAAACCAAGTTTATAGTCA
TTCCAGTTGCGAGTAAAGTTAACAGAGCCGTTAGTCCTTCTAAGAAACGT
TGTCCAGCCGCCGTTGTCCGTGGTCTGATCGCAATAAGTATTCAGTACAC
TGAAACGATGTCCGTGCAGTCGATAAATTCCATTGATTTTATAGCCAGCC
TGGTAAAACTCCAAGCAATCCTGTCTGGGTTGAATTTCAGTGCAGTCACA
ATATTTACTGTCTTTGACAGATTTGCAGGGAGCACATTTTCCATGAAGAC
CTCTCAAGAATGTAACTTGATTTTTCAGTGTTTGGTAATCAGCTGTCAGC
TTTTGGTTGGATTGCCTTAGAGCTTCTACACTTTGTTTGAGATTTGCCAG
AGATTGATCCAACAAATTACCAACGCTCTTGGAAGATGCAC
Run BLAST on NCBI

protein sequence of TCONS_00056773-protein

>TCONS_00056773-protein ID=TCONS_00056773-protein|Name=TCONS_00056773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
ASSKSVGNLLDQSLANLKQSVEALRQSNQKLTADYQTLKNQVTFLRGLHG
KCAPCKSVKDSKYCDCTEIQPRQDCLEFYQAGYKINGIYRLHGHRFSVLN
TYCDQTTDNGGWTTFLRRTNGSVNFTRNWNDYKLGFGKLTGEFWFGNENV
HDLXKD
Run BLAST on NCBI

transcript from alignment at scaffold_282:180043..180833-

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056773 ID=TCONS_00056773|Name=TCONS_00056773|organism=Clytia hemisphaerica|type=transcript|length=791bp|location=Sequence derived from alignment at scaffold_282:180043..180833- (Clytia hemisphaerica)
TCAGAATCGAATGTTGAAAACTTCATTCCATTGTGCTTGTTGCCAAAAGT
ATTTGGTTTTGAAACATTTCCAGAAGCTCCAGAGATTGTCAACATATATT
TGCTTGCTTCATCACCGACTTCAAAAATATCGTATTTTGCATAAACCATT
TTTGTTTGTCCAACCATGATCATGTTAATCAAAAGTTCGGATTTCTTTGG
TGCAACTTCTGGCTTTGTCAAGTCATGGACATTCTCATTCCCAAACCAAA
ATTCACCAGTTAACTTTCCAAAACCAAGTTTATAGTCATTCCAGTTGCGA
GTAAAGTTAACAGAGCCGTCAGTCCTTCTNCAAGTCATGGACATTCTCAT
TCCCAAACCAAAATTCACCAGTTAACTTTCCAAAACCAAGTTTATAGTCA
TTCCAGTTGCGAGTAAAGTTAACAGAGCCGTTAGTCCTTCTAAGAAACGT
TGTCCAGCCGCCGTTGTCCGTGGTCTGATCGCAATAAGTATTCAGTACAC
TGAAACGATGTCCGTGCAGTCGATAAATTCCATTGATTTTATAGCCAGCC
TGGTAAAACTCCAAGCAATCCTGTCTGGGTTGAATTTCAGTGCAGTCACA
ATATTTACTGTCTTTGACAGATTTGCAGGGAGCACATTTTCCATGAAGAC
CTCTCAAGAATGTAACTTGATTTTTCAGTGTTTGGTAATCAGCTGTCAGC
TTTTGGTTGGATTGCCTTAGAGCTTCTACACTTTGTTTGAGATTTGCCAG
AGATTGATCCAACAAATTACCAACGCTCTTGGAAGATGCAC

Coding sequence (CDS) from alignment at scaffold_282:180043..180833-

>TCONS_00056773 ID=TCONS_00056773|Name=TCONS_00056773|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_282:180043..180833- (Clytia hemisphaerica)
TCAGTCCTTCTNCAAGTCATGGACATTCTCATTCCCAAACCAAAATTCAC
CAGTTAACTTTCCAAAACCAAGTTTATAGTCATTCCAGTTGCGAGTAAAG
TTAACAGAGCCGTTAGTCCTTCTAAGAAACGTTGTCCAGCCGCCGTTGTC
CGTGGTCTGATCGCAATAAGTATTCAGTACACTGAAACGATGTCCGTGCA
GTCGATAAATTCCATTGATTTTATAGCCAGCCTGGTAAAACTCCAAGCAA
TCCTGTCTGGGTTGAATTTCAGTGCAGTCACAATATTTACTGTCTTTGAC
AGATTTGCAGGGAGCACATTTTCCATGAAGACCTCTCAAGAATGTAACTT
GATTTTTCAGTGTTTGGTAATCAGCTGTCAGCTTTTGGTTGGATTGCCTT
AGAGCTTCTACACTTTGTTTGAGATTTGCCAGAGATTGATCCAACAAATT
ACCAACGCTCTTGGAAGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035758XLOC_035758Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056773-proteinTCONS_00056773-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056773-exon-scaffold_282-1575043694:180043..180833TCONS_00056773-exon-scaffold_282-1575043694:180043..180833Clytia hemisphaericaexon
TCONS_00056773-exon-scaffold_282-1510915933:180043..180833TCONS_00056773-exon-scaffold_282-1510915933:180043..180833Clytia hemisphaericaexon
TCONS_00056773-exon-scaffold_282-1491911889:180043..180833TCONS_00056773-exon-scaffold_282-1491911889:180043..180833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:180043..180833 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121917	0.178332	0.13804	0.0675254	0	0.12992	0	0	0	0	0	0.121794	5.19754	3.91768	3.3998	1.61302	0.137284	0.422134	112.298	96.0169	0.353628	0.258731	1.25808	0.762521	4.97407	3.01954	0	0	0.067659	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00056773 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.776e-21
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = -3 
Query:  331 KCAPCKSVKDSKYCDCTEIQPRQDCLEFYQAGYKINGIYRLHGHRFSV-LNTYCDQTTDNGGWTTFLRRTNGSVNFTRNWNDYKLGFGKLTGEFWFGNENVHDL 639
             CAP  S       +   +Q   DC + Y  GY+ +G+Y ++    SV +  +CD TT+ G WT F +R NGSV+F R WNDYKLGFG+  GE+W G +N+H L
Sbjct:   17 PCAPQVSGIRGDALERFCLQQPLDCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNMHLL 120
The following BLAST results are available for this feature:
BLAST of TCONS_00056773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFAP42.776e-2143.27Microfibril-associated glycoprotein 4 OS=Homo sapi... [more]
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