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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056763 ID=TCONS_00056763|Name=TCONS_00056763|organism=Clytia hemisphaerica|type=transcript|length=2222bpRun BLAST on NCBI protein sequence of TCONS_00056763-protein >TCONS_00056763-protein ID=TCONS_00056763-protein|Name=TCONS_00056763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp KIKNVKNKSSRIYNTQLHKMATPGYFEKKSDVAELRTRLQNAMAKKDEKARun BLAST on NCBI transcript from alignment at scaffold_282:75912..96861- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056763 ID=TCONS_00056763|Name=TCONS_00056763|organism=Clytia hemisphaerica|type=transcript|length=20950bp|location=Sequence derived from alignment at scaffold_282:75912..96861- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_282:75912..96861- >TCONS_00056763 ID=TCONS_00056763|Name=TCONS_00056763|organism=Clytia hemisphaerica|type=CDS|length=33201bp|location=Sequence derived from alignment at scaffold_282:75912..96861- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056763 vs. Swiss-Prot (Human)
Match: AP4B1 (AP-4 complex subunit beta-1 OS=Homo sapiens GN=AP4B1 PE=1 SV=2) HSP 1 Score: 345.895 bits (886), Expect = 8.855e-107 Identity = 213/581 (36.66%), Postives = 336/581 (57.83%), Query Frame = 3
Query: 75 YFEKKSDVAELRTRLQNAMAKKDEKACRSAIKKIIQYMTLGIDVSELFPHVIMTSVTNDIVQKKLVYLYICSCAESNAELALLTVNTLVKDTTDHNPMVRGLALRSMLNMRLPMIIDYVKEPLLSALEDRSSYVRRNAVIGCIKFNKLAPNQFEEMGLDAKLMNKLNDNHSQVTMNAFLALDEVLRETGGLSLTKDIVRKMLSRLPDFNEWSQCMLLNRLVRYQPQDEDEIIEYLNFLDDRLTHSNKGVVLAALNLFLRYTKNVDYLAQGFYEXXXXXXXXXXXXXXXEVVYVTLKNISILIKTRARLFHEDFKIFFLRTNDLSYVCHQKLEILTDIVTEGNLQNIIEELRQYVRHDDYTVSCQAIQSIGAIGLNHPFASEPVTYILLDLLKSENDVIIDNALQSLKELMMKYASLSSVVLPEVNEAWESIQHYSIGKAALVWIYGEYGEDIPSSPYKLEELVDNIQDIDSISVKLNLLTGMLKLFFKRPPECQKTLGKLFKYFCGGDEDSETNMDIRDRALFYYRLLQNDIQKAKEIVFSKEDIEQARMSNFIGTLSDDDFR-----FQEFNTLSIIYGQ 1802
Y + V EL+ L N + D R+ I+++I+YMT G+D+S +F ++ S T DIVQKKLVYLY+C+ A +LALL +NTL KD +D NPMVRGLALRSM ++R+P + +Y+++P+L+ L D++SYVRR AV+GC K + L + + L +L + L D V +N +L+E+L++ GG+ + K I +L+R+ ++W Q +LN L+RYQP+ E+E+ + LN LD L S+ GVV+ A LFL K ++ R++ P+L+ +S E+ +V L ++ ++ + F +K FF ++ Y+ QK+E+L ++V + N+Q ++EELR Y + AI +IG I + ++ IL +LL + I +Q+ ++L+ + V + E+IQ S GK AL+W+ G +GE IP++PY LE+ V+N++ +VK+ LLT +L+LF RP ECQ LG+L Y+C + E +M +RDR LFYYRLL I + K I+ S + +G L D R +FNTL +YG+
Sbjct: 3 YLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRYMTQGLDMSGVFMEMVKASATVDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKMFPHVQTDVLVRVKGPLLAACSSESRELCFVALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGGIARTY---TDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEENIQD-SEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLL-YYC---IEEEKDMAVRDRGLFYYRLLLVGIDEVKRILCS------PKSDPTLGLLEDPAERPVNSWASDFNTLVPVYGK 569 The following BLAST results are available for this feature:
BLAST of TCONS_00056763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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