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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056762 ID=TCONS_00056762|Name=TCONS_00056762|organism=Clytia hemisphaerica|type=transcript|length=2438bp
AGCTATAGTCGAATGTTATTTTTTCTATCTTTCTCAAGACTATCTTCGAG
TGTGTTATTGAGAAATATTTGGGTTCAGTTCAATCAGAAGAAAAAATTTC
AGTAATGGGTGTATACTTACAAACAGTTTTGAATTGAGAACATTTATAAC
TTAATTcgaatttgttttctttttagagaaaaacgtaaaaatgttCAAAC
CACCCAAAAAAGAAAAGGATCCCATCTTGGATTTAATATTACAGAAGTAT
ATTCAAATTTCAAGAGATTCCATTCATGGACCTGTTGCTTTAAAAACGGA
CAAAAAGTTGGTTTCGATAAATAAAGcgagtgaaaataagaaaataattt
ttgataaaattccaGATGAGGCAAAGCTTGAGTCTGCCAACCTTGATGGT
CACAATGTGTCCTGCTTTACTGTTGGGGGCGAAAAAAGATTGTGCTTCAC
TGAGATAGTACATACTATCTTGAAAGAGGTCAATGTAcaagaaatcttca
aaaagcgAGACAGTTTGTTGATATTTACATCAAAATGTACACAGAAGCAG
CTCGATGAACTGAAATACATGGAAGTATTACCCTGGACAACTACATCGTC
AAATCTCATTACAGTGAGTGATGCCTTTCGACTTATTGGAGTTCTTCAAA
GTAATCTTGCCCCTAAAGCAGATCCTGTGAAAAGGACTGCGCTTAGTTTT
GAGGTGTACCATGAATGTTTTGGTGGTTGTATCGGACTTATTGAGCCAGA
GTTATACACAAGTTTGAGTGCACCGTGTATCAGATGCACCGAATGTAATG
GTCTTTTTTCAATACAGAAATTTGTTTCACATAACCATTCAAATTATGAT
GAAGTACACACGTGTCACTGGGGTTTTGACTCATCAAATTGGCGTTCTTA
CATTATGCCAGTAGAGCAAAACCCTACACGAGAACTTGTGAATTTATGGA
TGTctgtgaaaaataaattcaacagaCCAGATCTGCATTATCAAACCATG
GAAAAATCAGATAATAAACGCCAAGATGCAGATTTCATGGCCTATATTAA
TTCACCAGCAGACAACAAAAAGGCAATGGTCTCTCCAATAGAAAATCTAC
GAAACAGGGAGGCTGCATCAGCATTTAGGCCTTGGTCACCTTCACCGAAT
TCGTCAAAATATCCCAACAGCTCACATAGCAAATTCCAATTCCCTGTACC
CCAAAAACCGTCCAACAGGTGTGACAGTCACGAAAACTTGCCGCTATCTC
CTGTTTATATGAACTGTAAGCAATGTAAAACTGCTGCCGATGCATGCAAC
CGTGGTGGCAGTAGAAATGATAATGAACAGAACTGTAACTGTAAGGACTG
TACGCGCAATAAAGACTCTGTAGAAGGCTCAATACAAATGATACTCCAAG
ATTTTACAAATAAAGATAACAGGCTGACTACTGACCCTAAAGATTTAGCA
AAAGTACTTGCAAATGAACTTAAAAAACTGTCATTAAATAACGAGGAAAA
AGTAAAGGAGATAGCAATAAGCAACCAAAGACTTCAAACTGAATTACAAC
TCGTCAAGATAGAATCTTCCAAGAAGCTTTCTGAAGCTAAAGATACAAAA
ATGCACATAGAACAAGAACTTGAGTTGTTGCATAGAGAACGGCATAAGGA
GATGGAAGTTTTCTCTCAATTAAAACACAACCTTGAACAAGATATAtcga
atcaaaagaaaactggcAATCCACACGAAATGGAAACATTGTATAAAGAG
TTAACACTTGCCAAAACACATTTGCAACAGGCTGAAATCGATCGAGAAAA
TCTACGCAAACAACTAGAATGGTTCATGAAGAATAGGAAGAATGTCATGA
CCGATAACTGGACCCCGTTCCCAACAATGGCGCGCCAGTTTAGCGATTCT
GAAGAAGAAGCAGAAGACTGTCGAGAGAAATCATCAAACGAGGGACCATC
CAGTAAATTGATGAGGCTGTCCGAAGAATCAGATATCGAAGTGGAAAATT
AGGGAGGAAAGatctTGTATCGTTACTGTTCCGTTCAGAAAGAGTTCTTT
GGTTTTATATAATCGATTTGTTCTATTGGGTCATcaatatagtacgtacg
caaaaaatttccaaatatttgataCCCCATCCCCTCTTGTACggagagaa
caatagaaatgacgtcatttaaacaatagacaTACGCTTTTGATAAgtcc
ccctctcccccttcactgtgtaGGTACTATATTGATAGCCCGTATGTTGT
AATGTAATTTTTGGatgttgtttacattttgtttcTCCCTCGGTATTTTT
AAcaaccttttttttcttctgggCGTCTCAATTTACAGTTATAGAGAGAA
AGAGACGATCtaaaagaagtatttttttatcAACCGATAAAAAAGGTCTA
CTTTGATGTATTAGTACAAAAACTCGGTTCAAATCAGC Run BLAST on NCBI transcript from alignment at scaffold_282:58013..61442- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056762 ID=TCONS_00056762|Name=TCONS_00056762|organism=Clytia hemisphaerica|type=transcript|length=3430bp|location=Sequence derived from alignment at scaffold_282:58013..61442- (Clytia hemisphaerica)
AGCTATAGTCGAATGTTATTTTTTCTATCTTTCTCAAGACTATCTTCGAG
TGTGTTATTGAGAAATATTTGGGTTCAGTTCAATCAGAAGAAAAAATTTC
AGTAATGGGTGTATACTTACAAACAGTTTTGAATTGAGAACATTTATAAC
TTAATTCGAATTTGTTTTCTTTTTAGAGAAAAACGTAAAAATGTTCAAAC
CACCCAAAAAAGAAAAGGATCCCATCTTGGATTTAATATTACAGAAGTAT
ATTCAAATTTCAAGAGATTCCATTCATGGACCTGTTGCTTTAAAAACGGA
CAAAAAGTTGGTTTCGATAAATAAAGCGAGTGAAAATAAGAAAATAATTT
TTGATAAAATTCCAGATGAGGCAAAGCTTGAGTCTGCCAACCTTGATGGT
CACAATGTGTCCTGCTTTACTGTTGGGGGCGAAAAAAGATTGTGCTTCAC
TGAGATAGTACATACTATCTTGAAAGAGGTCAATGTACAAGAAATCTTCA
AAAAGCGAGACAGTTTGTTGATATTTACATCAAAATGTACACAGAAGCAG
CTCGATGAACTGAAATACATGGAAGTATTACCCTGGACAACTACATCGTC
AAATCTCATTACAGTGAGTGATGCCTTTCGACTTATTGGAGTTCTTCAAA
GTAATCTTGCCCCTAAAGCAGATCCTGTGAAAAGGACTGCGCTTAGTTTT
GAGGTGTACCATGAATGTTTTGGTGGTTGTATCGGACTTATTGAGCCAGA
GTTATACACAAGTTTGAGTGCACCGTGTATCAGATGCACCGAATGTAATG
GTCTTTTTTCAATACAGAAATTTGTTTCACATAACCATTCAAATTATGAT
GAAGTACACACGTGTCACTGGGGTTTTGACTCATCAAATTGGCGTTCTTA
CATTATGCCAGTAGAGCAAAACCCTACACGAGAACTTGTGAATTTATGGA
TGTCTGTGAAAAATAAATTCAACAGACCAGATCTGCATTATCAAACCATG
GAAAAATCAGATAATAAACGCCAAGATGCAGATTTCATGGCCTATATTAA
TTCACCAGCAGACAACAAAAAGGCAATGGTCTCTCCAATAGAAAATCTAC
GAAACAGGGAGGCTGCATCAGCATTTAGGCCTTGGTCACCTTCACCGAAT
TCGTCAAAATATCCCAACAGCTCACATAGCAAATTCCAATTCCCTGTACC
CCAAAAACCGTCCAACAGGTGTGACAGTCACGAAAACTTGCCGCTATCTC
CTGTTTATATGAACTGTAAGCAATGTAAAACTGCTGCCGATGCATGCAAC
CGTGGTGGCAGTAGAAATGATAATGAACAGAACTGTAACTGTAAGGACTG
TACGCGCAATAAAGACTCTGTAGAAGGCTCAATACAAATGATACTCCAAG
ATTTTACAAATAAAGATAACAGGCTGACTACTGACCCTAAAGATTTAGCA
AAAGTACTTGCAAATGAACTTAAAAAACTGTCATTAAATAACGAGGAAAA
AGTAAAGGAGATAGCAATAAGCAACCAAAGACTTCAAACTGAATTACAAC
TCGTCAAGATAGAATCTTCCAAGAAGCTTTCTGAAGCTAAAGATACAAAA
ATGCACATAGAACAAGAACTTGAGTTGTTGCATAGAGAACGGCATAAGGT
ATAATATCCTATAATGTGTTGTTCATTCTACTTTATTCATTCTTTTGATT
TTTCACCTGCATCCTAGTGAATTCAATTCAATTCTCTGCACAAATTTTTG
GTTGGCTCTAGTAATGAGAGTTTCCAATTATTATTCCATGATTATTTCTT
GAACCATATATGCTTGAACTGAACCCAATTCTAAAGCCTGTAAGACCATT
ATTGCCATTGTAATATTTTCTTATGTGATTTTTCTCTACAGGAGATGGAA
GTTTTCTCTCAATTAAAACACAACCTTGAACAAGATATATCGAATCAAAA
GAAAACTGGCAATCCACACGAAATGGAAACATTGTATAAAGAGTTAACAC
TTGCCAAAACACATTTGCAACAGGCTGAAATCGATCGAGAAAATCTACGC
AAACAACTAGAATGGTTCATGAAGAATAGGAAGAATGTCATGACCGATAA
CTGGACCCCGTTCCCAACAATGGCGCGCCAGTTTAGCGATTCTGAAGAAG
AAGCAGAAGACTGTCGAGAGAAATCATCAAACGAGTATGTTTTTTTCCTC
TCCAACTACTTCTTTAGAATCATTTTCTTGTTTTGTACCAGTTCTTCATC
CCAAATCTTTTGAATTGTACAATATTAGGTTCATTGCCAATTAAGATAAC
AATGTACCAGTGTTTGTGAACAGGCTTGTCGAAACATTTTAGGTTCATTG
CCAATGAAAAAGTATTAATAGGGTAGGTTCCTGTATCATTTGTAAGATCT
GGAGAGACCTGGTAGATCTGGGTAGGTTGCAGTAACATTTTTTTATATTG
TGCAATTATATTTTCAATTACTTTATTTTTTCCTGTTCTAGGGGACCATC
CAGTAAATTGATGAGGCTGTCCGAAGAATCAGATATCGAAGTGGAAAATT
AGGGAGGAAAGGTAAGTTTGAGTAAACTTTCTTTGTCAAATGGATTTTTT
CTCTCTTCTCGTATTACAACTCATATAGTGTTGAATTAGTAATGGACTGC
GAGAAAACTTAAACGCTCAGCGCGTTCACAAAATGGTATTGACCTTTCAA
CGTGACAAAACAAAAGTAAAGAGAGGGAGAGCAAAAAAGTAATCTCTTCT
TTGGAAATTGATGTTTTTAGAACATTACCTTCATGAAGATTATTTTTTAA
TATTTGACAGTCATTTTGTAAACTATATACCCTGTTAAAAATGAAAATAC
TTTAGTGTAGCTTCACTAGATTTACTGTGAAAATTGACACATTCTTCTAA
TATCTTTGTTTTAAAATATTCTTTTTTGGAGTTTTGGAAAAACTCGATAT
TCCTCACAATGTGCTTTATGATGTCAATATAATTTGTTTTTCTTTTTTTT
CAGATCTTGTATCGTTACTGTTCCGTTCAGAAAGAGTTCTTTGGTTTTAT
ATAATCGATTTGTTCTATTGGGTCATCAATATAGTACGTACGCAAAAAAT
TTCCAAATATTTGATACCCCATCCCCTCTTGTACGGAGAGAACAATAGAA
ATGACGTCATTTAAACAATAGACATACGCTTTTGATAAGTCCCCCTCTCC
CCCTTCACTGTGTAGGTACTATATTGATAGCCCGTATGTTGTAATGTAAT
TTTTGGATGTTGTTTACATTTTGTTTCTCCCTCGGTATTTTTAACAACCT
TTTTTTTCTTCTGGGCGTCTCAATTTACAGTTATAGAGAGAAAGAGACGA
TCTAAAAGAAGTATTTTTTTATCAACCGATAAAAAAGGTCTACTTTGATG
TATTAGTACAAAAACTCGGTTCAAATCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056762-exon-scaffold_282-1575043694:59795..61442 | TCONS_00056762-exon-scaffold_282-1575043694:59795..61442 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1575043694:59259..59551 | TCONS_00056762-exon-scaffold_282-1575043694:59259..59551 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1575043694:58882..58951 | TCONS_00056762-exon-scaffold_282-1575043694:58882..58951 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1575043694:58013..58439 | TCONS_00056762-exon-scaffold_282-1575043694:58013..58439 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1510915933:59795..61442 | TCONS_00056762-exon-scaffold_282-1510915933:59795..61442 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1510915933:59259..59551 | TCONS_00056762-exon-scaffold_282-1510915933:59259..59551 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1510915933:58882..58951 | TCONS_00056762-exon-scaffold_282-1510915933:58882..58951 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1510915933:58013..58439 | TCONS_00056762-exon-scaffold_282-1510915933:58013..58439 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1491911889:59795..61442 | TCONS_00056762-exon-scaffold_282-1491911889:59795..61442 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1491911889:59259..59551 | TCONS_00056762-exon-scaffold_282-1491911889:59259..59551 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1491911889:58882..58951 | TCONS_00056762-exon-scaffold_282-1491911889:58882..58951 | Clytia hemisphaerica | exon |
| TCONS_00056762-exon-scaffold_282-1491911889:58013..58439 | TCONS_00056762-exon-scaffold_282-1491911889:58013..58439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:58013..61442 - |
Blast
BLAST of TCONS_00056762 vs. Swiss-Prot (Human)
Match: SKI (Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.165e-43 Identity = 84/183 (45.90%), Postives = 115/183 (62.84%), Query Frame = 2
Query: 392 LDGHNVSCFTVGGEKRLCFTEIVHTILKEVNVQEIFKKRDSLLIFTSKCTQKQLDELKYMEVLPWTTTSSNLITVSDAFRLI-GVLQSNLAP---KADPVKRTALSFE-------VYHECFGGCIGLIEPELYTSLSAPCIRCTECNGLFSIQKFVSHNHSNYDEVHTCHWGFDSSNWRSYIM 907
L+G +SCF VGGEKRLC +I++++L++ ++Q+I D L I+ S+CT QL+ LK M +LP++ S LIT +DA RL +L P K + AL E VYHECFG C GL+ PELY+S SA CI+C +C ++ KFV H+H E TCHWGFDS+NWR+YI+
Sbjct: 105 LEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALGLELSERSVRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKAL-ENRTCHWGFDSANWRAYIL 286
The following BLAST results are available for this feature:
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