TCONS_00056760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056760
Unique NameTCONS_00056760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056760 ID=TCONS_00056760|Name=TCONS_00056760|organism=Clytia hemisphaerica|type=transcript|length=3859bp
AGCTATAGTCGAATGTTATTTTTTCTATCTTTCTCAAGACTATCTTCGAG
TGTGTTATTGAGAAATATTTGGGTTCAGTTCAATCAGAAGAAAAAATTTC
AGTAATGGGTGTATACTTACAAACAGTTTTGAATTGAGAACATTTATAAC
TTAATTcgaatttgttttctttttagagaaaaacgtaaaaatgttCAAAC
CACCCAAAAAAGAAAAGGATCCCATCTTGGATTTAATATTACAGAAGTAT
ATTCAAATTTCAAGAGATTCCATTCATGGACCTGTTGCTTTAAAAACGGA
CAAAAAGTTGGTTTCGATAAATAAAGcgagtgaaaataagaaaataattt
ttgataaaattccaGATGAGGCAAAGCTTGAGTCTGCCAACCTTGATGGT
CACAATGTGTCCTGCTTTACTGTTGGGGGCGAAAAAAGATTGTGCTTCAC
TGAGATAGTACATACTATCTTGAAAGAGGTCAATGTAcaagaaatcttca
aaaagcgAGACAGTTTGTTGATATTTACATCAAAATGTACACAGAAGCAG
CTCGATGAACTGAAATACATGGAAGTATTACCCTGGACAACTACATCGTC
AAATCTCATTACAGTGAGTGATGCCTTTCGACTTATTGGAGTTCTTCAAA
GTAATCTTGCCCCTAAAGCAGATCCTGTGAAAAGGACTGCGCTTAGTTTT
GAGGTGTACCATGAATGTTTTGGTGGTTGTATCGGACTTATTGAGCCAGA
GTTATACACAAGTTTGAGTGCACCGTGTATCAGATGCACCGAATGTAATG
GTCTTTTTTCAATACAGAAATTTGTTTCACATAACCATTCAAATTATGAT
GAAGTACACACGTGTCACTGGGGTTTTGACTCATCAAATTGGCGTTCTTA
CATTATGCCAGTAGAGCAAAACCCTACACGAGAACTTGTGAATTTATGGA
TGTctgtgaaaaataaattcaacagaCCAGATCTGCATTATCAAACCATG
GAAAAATCAGATAATAAACGCCAAGATGCAGATTTCATGGCCTATATTAA
TTCACCAGCAGACAACAAAAAGGCAATGGTCTCTCCAATAGAAAATCTAC
GAAACAGGGAGGCTGCATCAGCATTTAGGCCTTGGTCACCTTCACCGAAT
TCGTCAAAATATCCCAACAGCTCACATAGCAAATTCCAATTCCCTGTACC
CCAAAAACCGTCCAACAGGTGTGACAGTCACGAAAACTTGCCGCTATCTC
CTGTTTATATGAACTGTAAGCAATGTAAAACTGCTGCCGATGCATGCAAC
CGTGGTGGCAGTAGAAATGATAATGAACAGAACTGTAACTGTAAGGACTG
TACGCGCAATAAAGACTCTGTAGAAGGCTCAATACAAATGATACTCCAAG
ATTTTACAAATAAAGATAACAGGCTGACTACTGACCCTAAAGATTTAGCA
AAAGTACTTGCAAATGAACTTAAAAAACTGTCATTAAATAACGAGGAAAA
AGTAAAGGAGATAGCAATAAGCAACCAAAGACTTCAAACTGAATTACAAC
TCGTCAAGATAGAATCTTCCAAGAAGCTTTCTGAAGCTAAAGATACAAAA
ATGCACATAGAACAAGAGCTTGAGCTATTACACAGAGAACGACATAAGGA
GATGGAAGTTTTCTCTCAATTAAAACACAACCTTGAACAAGATATAtcga
atcaaaagaaaactggcAATCCACACGAAATGGAAACATTGTATAAAGAG
TTAACACTTGCAAAAACCCATTTGCAACAAGCAGAGATCGATCGTGAAAA
TCTACGCAAACAACTAGAATGGTTCATGAAGAATCGGAAAAATGTGATGA
CCGATAACTGGACCCCATTTCCAACCATGGCGCGCCAGTTTAGTGATTCT
GAAGAAGAAGCAGAAGACTGTCGAGAGAAATCATCAAACGAGGGACCATC
CAGTAAATTGATGAGGCTGTCCGAAGAATCAGATATCGAAGTGGAAAATT
AGGGAGGAAAGatctTGTATCGTTACTGTTCCGTTCAGAAAGAGTTCTTT
GGTTTTATATAATCGATTTGTTCTATTGGGTCATcaatatagtacgtacg
caaaaaatttccaaatatttgataCCCCATCCCCTCTTGTACggagagaa
caatagaaatgacgtcatttaaacaatagacaTACGCTTTTGATAAgtcc
ccctctcccccttcactgtgtaGGTACTATATTGATAGCCCGTATGTTGT
AATGTAATTTTTGGatgttgtttacattttgtttcTCCCTCGGTATTTTT
AAcaaccttttttttcttctgggCGTCTCAATTTACAGTTATAGAGAGAA
AGAGACGATCtaaaagaagtatttttttatcAACCGATAAAAAAGGTCTA
CTTTGATGTATTAGTACAAAAACTCGGTTCAAATCAGCTGGAGTCTATGA
AATCTCCTTGGAAACTTTGTTCTtgcattaaaaataaatcactaaaaagt
ttttcaacatTACTAAAAAAAGAGGAGCTTTTGAAccggttttttttctt
tcttttctcttAAAACTCGAGATTTAAGGATTTGTGTGATAGCTCCTACT
GTGCAAGAGAATttgatcaaaagaaaactctatctactgtttttttctct
ttctcctaTATCTTTCAATAGAGCTAACTTTGTCATTATTCTTTGACATA
GATTCAGTCTTATTACTTGACATACATAAATCCTTTCTATAGACCTTCAG
CCCAATAAACACCAGTTTTCATATTATCGCTTCTTTTTATCActccataa
tttttttcttcttaccTTTATTTTTTGTGTCTACtaattttttttacgtt
ttttttatttttgttcgcgaaaaaagtgaaattttttatgTTCATATTTT
CTATAGAGACGTAAAATgagatttattttgaaagcttttgaaaaatatgt
ataTCTATTAGTATATATATAGCTGGCTCTATTTTTACATAATGTTTAAG
GCAGGACGATTCTCTTTCTCAGGCCTTAATTCACATATTTTCTGGCGGCT
AACTAAATAGGTATGGACAAAAACTCGTTATACacctaaataaataaaaa
tcttgGATACGCCTATTTCAAATTGACTAAAGCACAGATATTAAGTGATT
TTATCTTGGAGCAAAGAGACAAGGGATTGAATGTAAAATTTAATCTTGAA
TTTAATTCAACTATCATCAAAACGTAGGTGATTATGTATTTTATCACCAG
GTCTGTCGTCGCGTAGAAAGATGAGGTCTAGTGATAACTGTCTCCCTTTT
CACTGTAACATCGCAGCAAGACTGTGAAAGCCTTTTCCCAAGGACGTAAT
AGAGTATACTGTGCTTTAGAGAATTTGTGTCAACTGTAGTGAAACAGTTG
AGGTTTTTTATttaagatttattttttatgtacaAATAACTATAtatatt
ataaaatttttgcATAGACGTATAGGTCCATTCAATATAGACGACGATCT
TGAGAAATGCAAAAACAGTGAGCTGGCTGGGAATTTGCATAGTTATACTC
CTTTTTGACTTACGTTTAAaagaaacttaaattttgaaagtaaGAGAAGT
TTGCATACAAACTGTACGGTATGGTTTGATGTTTTGATATTGAATCATTT
CGTTAAGTTTAAATCTGTTGAGGTATGCCAAACACGTGAGTGCAGTAAAG
CCTTTCGTATCGCCCTCCCCTTTTTTCCTTGTCGTTGAAATGATTTCTCT
ATCAAAGGGGTATGTATGACAACTTTCCAAAACTGTAAATTGATATTATA
TCTTATACTACTACTGTTGttaaatacaaaataaagaacaatGGATAATT
aaatgaaaa
Run BLAST on NCBI

protein sequence of TCONS_00056760-protein

>TCONS_00056760-protein ID=TCONS_00056760-protein|Name=TCONS_00056760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MFKPPKKEKDPILDLILQKYIQISRDSIHGPVALKTDKKLVSINKASENK
KIIFDKIPDEAKLESANLDGHNVSCFTVGGEKRLCFTEIVHTILKEVNVQ
EIFKKRDSLLIFTSKCTQKQLDELKYMEVLPWTTTSSNLITVSDAFRLIG
VLQSNLAPKADPVKRTALSFEVYHECFGGCIGLIEPELYTSLSAPCIRCT
ECNGLFSIQKFVSHNHSNYDEVHTCHWGFDSSNWRSYIMPVEQNPTRELV
NLWMSVKNKFNRPDLHYQTMEKSDNKRQDADFMAYINSPADNKKAMVSPI
ENLRNREAASAFRPWSPSPNSSKYPNSSHSKFQFPVPQKPSNRCDSHENL
PLSPVYMNCKQCKTAADACNRGGSRNDNEQNCNCKDCTRNKDSVEGSIQM
ILQDFTNKDNRLTTDPKDLAKVLANELKKLSLNNEEKVKEIAISNQRLQT
ELQLVKIESSKKLSEAKDTKMHIEQELELLHRERHKEMEVFSQLKHNLEQ
DISNQKKTGNPHEMETLYKELTLAKTHLQQAEIDRENLRKQLEWFMKNRK
NVMTDNWTPFPTMARQFSDSEEEAEDCREKSSNEGPSSKLMRLSEESDIE
VEN
Run BLAST on NCBI

transcript from alignment at scaffold_282:54131..61442-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056760 ID=TCONS_00056760|Name=TCONS_00056760|organism=Clytia hemisphaerica|type=transcript|length=7312bp|location=Sequence derived from alignment at scaffold_282:54131..61442- (Clytia hemisphaerica)
AGCTATAGTCGAATGTTATTTTTTCTATCTTTCTCAAGACTATCTTCGAG
TGTGTTATTGAGAAATATTTGGGTTCAGTTCAATCAGAAGAAAAAATTTC
AGTAATGGGTGTATACTTACAAACAGTTTTGAATTGAGAACATTTATAAC
TTAATTCGAATTTGTTTTCTTTTTAGAGAAAAACGTAAAAATGTTCAAAC
CACCCAAAAAAGAAAAGGATCCCATCTTGGATTTAATATTACAGAAGTAT
ATTCAAATTTCAAGAGATTCCATTCATGGACCTGTTGCTTTAAAAACGGA
CAAAAAGTTGGTTTCGATAAATAAAGCGAGTGAAAATAAGAAAATAATTT
TTGATAAAATTCCAGATGAGGCAAAGCTTGAGTCTGCCAACCTTGATGGT
CACAATGTGTCCTGCTTTACTGTTGGGGGCGAAAAAAGATTGTGCTTCAC
TGAGATAGTACATACTATCTTGAAAGAGGTCAATGTACAAGAAATCTTCA
AAAAGCGAGACAGTTTGTTGATATTTACATCAAAATGTACACAGAAGCAG
CTCGATGAACTGAAATACATGGAAGTATTACCCTGGACAACTACATCGTC
AAATCTCATTACAGTGAGTGATGCCTTTCGACTTATTGGAGTTCTTCAAA
GTAATCTTGCCCCTAAAGCAGATCCTGTGAAAAGGACTGCGCTTAGTTTT
GAGGTGTACCATGAATGTTTTGGTGGTTGTATCGGACTTATTGAGCCAGA
GTTATACACAAGTTTGAGTGCACCGTGTATCAGATGCACCGAATGTAATG
GTCTTTTTTCAATACAGAAATTTGTTTCACATAACCATTCAAATTATGAT
GAAGTACACACGTGTCACTGGGGTTTTGACTCATCAAATTGGCGTTCTTA
CATTATGCCAGTAGAGCAAAACCCTACACGAGAACTTGTGAATTTATGGA
TGTCTGTGAAAAATAAATTCAACAGACCAGATCTGCATTATCAAACCATG
GAAAAATCAGATAATAAACGCCAAGATGCAGATTTCATGGCCTATATTAA
TTCACCAGCAGACAACAAAAAGGCAATGGTCTCTCCAATAGAAAATCTAC
GAAACAGGGAGGCTGCATCAGCATTTAGGCCTTGGTCACCTTCACCGAAT
TCGTCAAAATATCCCAACAGCTCACATAGCAAATTCCAATTCCCTGTACC
CCAAAAACCGTCCAACAGGTGTGACAGTCACGAAAACTTGCCGCTATCTC
CTGTTTATATGAACTGTAAGCAATGTAAAACTGCTGCCGATGCATGCAAC
CGTGGTGGCAGTAGAAATGATAATGAACAGAACTGTAACTGTAAGGACTG
TACGCGCAATAAAGACTCTGTAGAAGGCTCAATACAAATGATACTCCAAG
ATTTTACAAATAAAGATAACAGGCTGACTACTGACCCTAAAGATTTAGCA
AAAGTACTTGCAAATGAACTTAAAAAACTGTCATTAAATAACGAGGAAAA
AGTAAAGGAGATAGCAATAAGCAACCAAAGACTTCAAACTGAATTACAAC
TCGTCAAGATAGAATCTTCCAAGAAGCTTTCTGAAGCTAAAGATACAAAA
ATGCACATAGAACAAGAACTTGAGTTGTTGCATAGAGAACGGCATAAGGT
ATAATATCCTATAATGTGTTGTTCATTCTACTTTATTCATTCTTTTGATT
TTTCACCTGCATCCTAGTGAATTCAATTCAATTCTCTGCACAAATTTTTG
GTTGGCTCTAGTAATGAGAGTTTCCAATTATTATTCCATGATTATTTCTT
GAACCATATATGCTTGAACTGAACCCAATTCTAAAGCCTGTAAGACCATT
ATTGCCATTGTAATATTTTCTTATGTGATTTTTCTCTACAGGAGATGGAA
GTTTTCTCTCAATTAAAACACAACCTTGAACAAGATATATCGAATCAAAA
GAAAACTGGCAATCCACACGAAATGGAAACATTGTATAAAGAGTTAACAC
TTGCCAAAACACATTTGCAACAGGCTGAAATCGATCGAGAAAATCTACGC
AAACAACTAGAATGGTTCATGAAGAATAGGAAGAATGTCATGACCGATAA
CTGGACCCCGTTCCCAACAATGGCGCGCCAGTTTAGCGATTCTGAAGAAG
AAGCAGAAGACTGTCGAGAGAAATCATCAAACGAGTATGTTTTTTTCCTC
TCCAACTACTTCTTTAGAATCATTTTCTTGTTTTGTACCAGTTCTTCATC
CCAAATCTTTTGAATTGTACAATATTAGGTTCATTGCCAATTAAGATAAC
AATGTACCAGTGTTTGTGAACAGGCTTGTCGAAACATTTTAGGTTCATTG
CCAATGAAAAAGTATTAATAGGGTAGGTTCCTGTATCATTTGTAAGATCT
GGAGAGACCTGGTAGATCTGGGTAGGTTGCAGTAACATTTTTTTATATTG
TGCAATTATATTTTCAATTACTTTATTTTTTCCTGTTCTAGGGGACCATC
CAGTAAATTGATGAGGCTGTCCGAAGAATCAGATATCGAAGTGGAAAATT
AGGGAGGAAAGGTAAGTTTGAGTAAACTTTCTTTGTCAAATGGATTTTTT
CTCTCTTCTCGTATTACAACTCATATAGTGTTGAATTAGTAATGGACTGC
GAGAAAACTTAAACGCTCAGCGCGTTCACAAAATGGTATTGACCTTTCAA
CGTGACAAAACAAAAGTAAAGAGAGGGAGAGCAAAAAAGTAATCTCTTCT
TTGGAAATTGATGTTTTTAGAACATTACCTTCATGAAGATTATTTTTTAA
TATTTGACAGTCATTTTGTAAACTATATACCCTGTTAAAAATGAAAATAC
TTTAGTGTAGCTTCACTAGATTTACTGTGAAAATTGACACATTCTTCTAA
TATCTTTGTTTTAAAATATTCTTTTTTGGAGTTTTGGAAAAACTCGATAT
TCCTCACAATGTGCTTTATGATGTCAATATAATTTGTTTTTCTTTTTTTT
CAGATCTTGTATCGTTACTGTTCCGTTCAGAAAGAGTTCTTTGGTTTTAT
ATAATCGATTTGTTCTATTGGGTCATCAATATAGTACGTACGCAAAAAAT
TTCCAAATATTTGATACCCCATCCCCTCTTGTACGGAGAGAACAATAGAA
ATGACGTCATTTAAACAATAGACATACGCTTTTGATAAGTCCCCCTCTCC
CCCTTCACTGTGTAGGTACTATATTGATAGCCCGTATGTTGTAATGTAAT
TTTTGGATGTTGTTTACATTTTGTTTCTCCCTCGGTATTTTTAACAACCT
TTTTTTTCTTCTGGGCGTCTCAATTTACAGTTATAGAGAGAAAGAGACGA
TCTAAAAGAAGTATTTTTTTATCAACCGATAAAAAAGGTCTACTTTGATG
TATTAGTACAAAAACTCGGTTCAAATCAGCTGGAGTCTATGAAATCTCCT
TGGAAACTTTGTTCTTGCATTAAAAATAAATCACTAAAAAGTTTTTCAAC
ATTACTAAAAAAAGAGGAGCTTTTGAACCGGTTTTTTTTCTTTCTTTTCT
CTTAAAACTCGAGATTTAAGGATTTGTGTGATAGCTCCTACTGTGCAAGA
GAATTTGATCAAAAGAAAACTCTATCTACTGTTTTTTTCTCTTTCTCCTA
TATCTTTCAATAGAGCTAACTTTGTCANTAATGAACAGAACTGTAACTGT
AAAGACTGTACGCGCAATAAAGACTCTGTAGAAGGCTCAATACAAATGAT
ACTCCAAGATTTTACAAATAAAGATAACAGGCTGACTACTGACCCTAAAG
ATTTAGCAAAAGTACTTGCAAATGAACTTAAAAAACTGTCATTAAATAAC
GAGGAAAAAGTAAAGGAGATAGCAATAAGCAACCAAAGACTTCAAACTGA
ATTACAACTCGTCAAGATAGAATCTTCCAAGAAGCTTTCTGAAGCTAAAG
ATACAAAAATGCACATAGAACAAGAACTTGAGTTNTAAAAAGCTGTCTGA
AGCTAAAGACACAAAAATGCACATAGAACAAGAGCTTGAGCTATTACACA
GAGAACGACATAAGGTATAATATCCTATAATGTGTTGTTCATTCTACTTT
ATTCATTCTTTTGATTTTTCACCTGCATCCTAGTGAATCTCTGCACAAAT
TTGTGGTTGGCTCTAGTAATGAGAGTTTCAAATTATTATTCCATGATTAT
TTCTTGAACCATATATGCTTGAACTGAACCCAATTCTAAAGCCTGTAAGA
CCATTATTGCCATTGTAATGTAATATTTTCTTATGTGATTTTTCTACAGG
AGATGGAAGTTTTCTCTCAATTAAAACACAACCTTGAACAAGATATATCG
AATCAAAAGAAAACTGGCAATCCACACGAAATGGAAACATTGTATAAAGA
GTTAACACTTGCAAAAACCCATTTGCAACAAGCAGAGATCGATCGTGAAA
ATCTACGCAAACAACTAGAATGGTTCATGAAGAATCGGAAAAATGTGATG
ACCGATAACTGGACCCCATTTCCAACCATGGCGCGCCAGTTTAGTGATTC
TGAAGAAGAAGCAGAAGACTGTCGAGAGAAATCATCAAACGAGTATGTTT
TTTTCCTCTCCAACTACTTCTTTAGAACCATTTTCTTGTTTTGTACCAGT
TCTTCATCCCAAATCTTTTGAATTGTACAATATTAGGCTCATTGCCAATT
AAGATAACAATGTACCAGTGTTTGTGAACAGGCTTGTCGAAACATTTTAG
GTTCATTGCCAATGAAAAAGTATTAATAGGGTAGGTTGCTGTATCATTTG
TAAGATCTGGAGAGACCTGGTAGATCTGGGTAGGTTGCAGTAACATTTTT
TTATATTGTGCAATTATATTTTCAATTACTTTATTTTTTCCTGTTCTAGG
GGACCATCCAGTAAATTGATGAGGCTGTCCGAAGAATCAGATATCGAAGT
GGAAAATTAGGGAGGAAAGGTAAGTTTGAGTAAACTTTCTTTGTCAAATG
GATTTTTTCTCTCTTCTCGTATTACAACTCATATAGTGTTGAATTAGTAA
TGGACTGCGAGAAAACTTAAACGCTCAGCGCGTTCACAAAATGGTATTGA
CCTTTCAACGTGACAAAACAAAAGTAAAGAGAGGGAGAGCAAAAAAGTAA
TCTCTTCTTTGGAAATTGATGTTTTTAGAACATTACCTTCATGAAGATTA
TTTTTTAATATTTGACAGTCATTTTGTAAACTATATACCCTGTTAAAAAT
GAAAATACTTTAGTGTAGCTTCACTAGATTTACTGTGAAAATTGACACAT
TCTTCTAATATCTTTGTTTTAAAATATTCTTTTTTGGAGTTTTGGAAAAA
CTCGATATTCCTCACAATGTGCTTTATGATGTCAATATAATTTGTTTTTC
TTTTTTTTCAGATCTTGTATCGTTACTGTTCCGTTCAGAAAGAGTTCTTT
GGTTTTATATAATCGATTTGTTCTATTGGGTCATCAATATAGTACGTACG
CAAAAAATTTCCAAATATTTGATACCCCATCCCCTCTTGTACGGAGAGAA
CAATAGAAATGACGTCATTTAAACAATAGACATACGCTTTTGATAAGTCC
CCCTCTCCCCCTTCACTGTGTAGGTACTATATTGATAGCCCGTATGTTGT
AATGTAATTTTTGGATGTTGTTTACATTTTGTTTCTCCCTCGGTATTTTT
AACAACCTTTTTTTTCTTCTGGGCGTCTCAATTTACAGTTATAGAGAGAA
AGAGACGATCTAAAAGAAGTATTTTTTTATCAACCGATAAAAAAGGTCTA
CTTTGATGTATTAGTACAAAAACTCGGTTCAAATCAGCTGGAGTCTATGA
AATCTCCTTGGAAACTTTGTTCTTGCATTAAAAATAAATCACTAAAAAGT
TTTTCAACATTACTAAAAAAAGAGGAGCTTTTGAACCGGTTTTTTTTCTT
TCTTTTCTCTTAAAACTCGAGATTTAAGGATTTGTGTGATAGCTCCTACT
GTGCAAGAGAATTTGATCAAAAGAAAACTCTATCTACTGTTTTTTTCTCT
TTCTCCTATATCTTTCAATAGAGCTAACTTTGTCATTATTCTTTGACATA
GATTCAGTCTTATTACTTGACATACATAAATCCTTTCTATAGACCTTCAG
CCCAATAAACACCAGTTTTCATATTATCGCTTCTTTTTATCACTCCATAA
TTTTTTTCTTCTTACCTTTATTTTTTGTGTCTACTAATTTTTTTTACGTT
TTTTTTATTTTTGTTCGCGAAAAAAGTGAAATTTTTTATGTTCATATTTT
CTATAGAGACGTAAAATGAGATTTATTTTGAAAGCTTTTGAAAAATATGT
ATATCTATTAGTATATATATAGCTGGCTCTATTTTTACATAATGTTTAAG
GCAGGACGATTCTCTTTCTCAGGCCTTAATTCACATATTTTCTGGCGGCT
AACTAAATAGGTATGGACAAAAACTCGTTATACACCTAAATAAATAAAAA
TCTTGGATACGCCTATTTCAAATTGACTAAAGCACAGATATTAAGTGATT
TTATCTTGGAGCAAAGAGACAAGGGATTGAATGTAAAATTTAATCTTGAA
TTTAATTCAACTATCATCAAAACGTAGGTGATTATGTATTTTATCACCAG
GTCTGTCGTCGCGTAGAAAGATGAGGTCTAGTGATAACTGTCTCCCTTTT
CACTGTAACATCGCAGCAAGACTGTGAAAGCCTTTTCCCAAGGACGTAAT
AGAGTATACTGTGCTTTAGAGAATTTGTGTCAACTGTAGTGAAACAGTTG
AGGTTTTTTATTTAAGATTTATTTTTTATGTACAAATAACTATATATATT
ATAAAATTTTTGCATAGACGTATAGGTCCATTCAATATAGACGACGATCT
TGAGAAATGCAAAAACAGTGAGCTGGCTGGGAATTTGCATAGTTATACTC
CTTTTTGACTTACATTTAAAAGAAACTTAAATTTTGTAAGTAAGAGAATT
TTGCATACAAGCNTACGTTTAAAAGAAACTTAAATTTTGAAAGTAAGAGA
AGTTTGCATACAAACTGTACGGTATGGTTTGATGTTTTGATATTGAATCA
TTTCGTTAAGTTTAAATCTGTTGAGGTATGCCAAACACGTGAGTGCAGTA
AAGCCTTTCGTATCGCCCTCCCCTTTTTTCCTTGTCGTTGAAATGATTTC
TCTATCAAAGGGGTATGTATGACAACTTTCCAAAACTGTAAATTGATATT
ATATCTTATACTACTACTGTTGTTAAATACAAAATAAAGAACAATGGATA
ATTAAATGAAAA

Coding sequence (CDS) from alignment at scaffold_282:54131..61442-

>TCONS_00056760 ID=TCONS_00056760|Name=TCONS_00056760|organism=Clytia hemisphaerica|type=CDS|length=7248bp|location=Sequence derived from alignment at scaffold_282:54131..61442- (Clytia hemisphaerica)
GGGACCATCCAGTAAATTGATGAGGCTGTCCGAAGAATCAGATATCGAAG
TGGAAAATTAGGAGATGGAAGTTTTCTCTCAATTAAAACACAACCTTGAA
CAAGATATATCGAATCAAAAGAAAACTGGCAATCCACACGAAATGGAAAC
ATTGTATAAAGAGTTAACACTTGCAAAAACCCATTTGCAACAAGCAGAGA
TCGATCGTGAAAATCTACGCAAACAACTAGAATGGTTCATGAAGAATCGG
AAAAATGTGATGACCGATAACTGGACCCCATTTCCAACCATGGCGCGCCA
GTTTAGTGATTCTGAAGAAGAAGCAGAAGACTGTCGAGAGAAATCATCAA
ACGAATAGAACAAGAGCTTGAGCTATTACACAGAGAACGACATAAGATGT
TCAAACCACCCAAAAAAGAAAAGGATCCCATCTTGGATTTAATATTACAG
AAGTATATTCAAATTTCAAGAGATTCCATTCATGGACCTGTTGCTTTAAA
AACGGACAAAAAGTTGGTTTCGATAAATAAAGCGAGTGAAAATAAGAAAA
TAATTTTTGATAAAATTCCAGATGAGGCAAAGCTTGAGTCTGCCAACCTT
GATGGTCACAATGTGTCCTGCTTTACTGTTGGGGGCGAAAAAAGATTGTG
CTTCACTGAGATAGTACATACTATCTTGAAAGAGGTCAATGTACAAGAAA
TCTTCAAAAAGCGAGACAGTTTGTTGATATTTACATCAAAATGTACACAG
AAGCAGCTCGATGAACTGAAATACATGGAAGTATTACCCTGGACAACTAC
ATCGTCAAATCTCATTACAGTGAGTGATGCCTTTCGACTTATTGGAGTTC
TTCAAAGTAATCTTGCCCCTAAAGCAGATCCTGTGAAAAGGACTGCGCTT
AGTTTTGAGGTGTACCATGAATGTTTTGGTGGTTGTATCGGACTTATTGA
GCCAGAGTTATACACAAGTTTGAGTGCACCGTGTATCAGATGCACCGAAT
GTAATGGTCTTTTTTCAATACAGAAATTTGTTTCACATAACCATTCAAAT
TATGATGAAGTACACACGTGTCACTGGGGTTTTGACTCATCAAATTGGCG
TTCTTACATTATGCCAGTAGAGCAAAACCCTACACGAGAACTTGTGAATT
TATGGATGTCTGTGAAAAATAAATTCAACAGACCAGATCTGCATTATCAA
ACCATGGAAAAATCAGATAATAAACGCCAAGATGCAGATTTCATGGCCTA
TATTAATTCACCAGCAGACAACAAAAAGGCAATGGTCTCTCCAATAGAAA
ATCTACGAAACAGGGAGGCTGCATCAGCATTTAGGCCTTGGTCACCTTCA
CCGAATTCGTCAAAATATCCCAACAGCTCACATAGCAAATTCCAATTCCC
TGTACCCCAAAAACCGTCCAACAGGTGTGACAGTCACGAAAACTTGCCGC
TATCTCCTGTTTATATGAACTGTAAGCAATGTAAAACTGCTGCCGATGCA
TGCAACCGTGGTGGCAGTAGAAATGATAATGAACAGAACTGTAACTGTAA
GGACTGTACGCGCAATAAAGACTCTGTAGAAGGCTCAATACAAATGATAC
TCCAAGATTTTACAAATAAAGATAACAGGCTGACTACTGACCCTAAAGAT
TTAGCAAAAGTACTTGCAAATGAACTTAAAAAACTGTCATTAAATAACGA
GGAAAAAGTAAAGGAGATAGCAATAAGCAACCAAAGACTTCAAACTGAAT
TACAACTCGTCAAGATAGAATCTTCCAAGAAGCTTTCTGAAGCTAAAGAT
ACAAAAATGCACGGGACCATCCAGTAAATTGATGAGGCTGTCCGAAGAAT
CAGATATCGAAGTGGAAAATTAGGAGATGGAAGTTTTCTCTCAATTAAAA
CACAACCTTGAACAAGATATATCGAATCAAAAGAAAACTGGCAATCCACA
CGAAATGGAAACATTGTATAAAGAGTTAACACTTGCAAAAACCCATTTGC
AACAAGCAGAGATCGATCGTGAAAATCTACGCAAACAACTAGAATGGTTC
ATGAAGAATCGGAAAAATGTGATGACCGATAACTGGACCCCATTTCCAAC
CATGGCGCGCCAGTTTAGTGATTCTGAAGAAGAAGCAGAAGACTGTCGAG
AGAAATCATCAAACGAATAGAACAAGAGCTTGAGCTATTACACAGAGAAC
GACATAAGATGTTCAAACCACCCAAAAAAGAAAAGGATCCCATCTTGGAT
TTAATATTACAGAAGTATATTCAAATTTCAAGAGATTCCATTCATGGACC
TGTTGCTTTAAAAACGGACAAAAAGTTGGTTTCGATAAATAAAGCGAGTG
AAAATAAGAAAATAATTTTTGATAAAATTCCAGATGAGGCAAAGCTTGAG
TCTGCCAACCTTGATGGTCACAATGTGTCCTGCTTTACTGTTGGGGGCGA
AAAAAGATTGTGCTTCACTGAGATAGTACATACTATCTTGAAAGAGGTCA
ATGTACAAGAAATCTTCAAAAAGCGAGACAGTTTGTTGATATTTACATCA
AAATGTACACAGAAGCAGCTCGATGAACTGAAATACATGGAAGTATTACC
CTGGACAACTACATCGTCAAATCTCATTACAGTGAGTGATGCCTTTCGAC
TTATTGGAGTTCTTCAAAGTAATCTTGCCCCTAAAGCAGATCCTGTGAAA
AGGACTGCGCTTAGTTTTGAGGTGTACCATGAATGTTTTGGTGGTTGTAT
CGGACTTATTGAGCCAGAGTTATACACAAGTTTGAGTGCACCGTGTATCA
GATGCACCGAATGTAATGGTCTTTTTTCAATACAGAAATTTGTTTCACAT
AACCATTCAAATTATGATGAAGTACACACGTGTCACTGGGGTTTTGACTC
ATCAAATTGGCGTTCTTACATTATGCCAGTAGAGCAAAACCCTACACGAG
AACTTGTGAATTTATGGATGTCTGTGAAAAATAAATTCAACAGACCAGAT
CTGCATTATCAAACCATGGAAAAATCAGATAATAAACGCCAAGATGCAGA
TTTCATGGCCTATATTAATTCACCAGCAGACAACAAAAAGGCAATGGTCT
CTCCAATAGAAAATCTACGAAACAGGGAGGCTGCATCAGCATTTAGGCCT
TGGTCACCTTCACCGAATTCGTCAAAATATCCCAACAGCTCACATAGCAA
ATTCCAATTCCCTGTACCCCAAAAACCGTCCAACAGGTGTGACAGTCACG
AAAACTTGCCGCTATCTCCTGTTTATATGAACTGTAAGCAATGTAAAACT
GCTGCCGATGCATGCAACCGTGGTGGCAGTAGAAATGATAATGAACAGAA
CTGTAACTGTAAGGACTGTACGCGCAATAAAGACTCTGTAGAAGGCTCAA
TACAAATGATACTCCAAGATTTTACAAATAAAGATAACAGGCTGACTACT
GACCCTAAAGATTTAGCAAAAGTACTTGCAAATGAACTTAAAAAACTGTC
ATTAAATAACGAGGAAAAAGTAAAGGAGATAGCAATAAGCAACCAAAGAC
TTCAAACTGAATTACAACTCGTCAAGATAGAATCTTCCAAGAAGCTTTCT
GAAGCTAAAGATACAAAAATGCACGGGACCATCCAGTAAATTGATGAGGC
TGTCCGAAGAATCAGATATCGAAGTGGAAAATTAGGAGATGGAAGTTTTC
TCTCAATTAAAACACAACCTTGAACAAGATATATCGAATCAAAAGAAAAC
TGGCAATCCACACGAAATGGAAACATTGTATAAAGAGTTAACACTTGCAA
AAACCCATTTGCAACAAGCAGAGATCGATCGTGAAAATCTACGCAAACAA
CTAGAATGGTTCATGAAGAATCGGAAAAATGTGATGACCGATAACTGGAC
CCCATTTCCAACCATGGCGCGCCAGTTTAGTGATTCTGAAGAAGAAGCAG
AAGACTGTCGAGAGAAATCATCAAACGAATAGAACAAGAGCTTGAGCTAT
TACACAGAGAACGACATAAGATGTTCAAACCACCCAAAAAAGAAAAGGAT
CCCATCTTGGATTTAATATTACAGAAGTATATTCAAATTTCAAGAGATTC
CATTCATGGACCTGTTGCTTTAAAAACGGACAAAAAGTTGGTTTCGATAA
ATAAAGCGAGTGAAAATAAGAAAATAATTTTTGATAAAATTCCAGATGAG
GCAAAGCTTGAGTCTGCCAACCTTGATGGTCACAATGTGTCCTGCTTTAC
TGTTGGGGGCGAAAAAAGATTGTGCTTCACTGAGATAGTACATACTATCT
TGAAAGAGGTCAATGTACAAGAAATCTTCAAAAAGCGAGACAGTTTGTTG
ATATTTACATCAAAATGTACACAGAAGCAGCTCGATGAACTGAAATACAT
GGAAGTATTACCCTGGACAACTACATCGTCAAATCTCATTACAGTGAGTG
ATGCCTTTCGACTTATTGGAGTTCTTCAAAGTAATCTTGCCCCTAAAGCA
GATCCTGTGAAAAGGACTGCGCTTAGTTTTGAGGTGTACCATGAATGTTT
TGGTGGTTGTATCGGACTTATTGAGCCAGAGTTATACACAAGTTTGAGTG
CACCGTGTATCAGATGCACCGAATGTAATGGTCTTTTTTCAATACAGAAA
TTTGTTTCACATAACCATTCAAATTATGATGAAGTACACACGTGTCACTG
GGGTTTTGACTCATCAAATTGGCGTTCTTACATTATGCCAGTAGAGCAAA
ACCCTACACGAGAACTTGTGAATTTATGGATGTCTGTGAAAAATAAATTC
AACAGACCAGATCTGCATTATCAAACCATGGAAAAATCAGATAATAAACG
CCAAGATGCAGATTTCATGGCCTATATTAATTCACCAGCAGACAACAAAA
AGGCAATGGTCTCTCCAATAGAAAATCTACGAAACAGGGAGGCTGCATCA
GCATTTAGGCCTTGGTCACCTTCACCGAATTCGTCAAAATATCCCAACAG
CTCACATAGCAAATTCCAATTCCCTGTACCCCAAAAACCGTCCAACAGGT
GTGACAGTCACGAAAACTTGCCGCTATCTCCTGTTTATATGAACTGTAAG
CAATGTAAAACTGCTGCCGATGCATGCAACCGTGGTGGCAGTAGAAATGA
TAATGAACAGAACTGTAACTGTAAGGACTGTACGCGCAATAAAGACTCTG
TAGAAGGCTCAATACAAATGATACTCCAAGATTTTACAAATAAAGATAAC
AGGCTGACTACTGACCCTAAAGATTTAGCAAAAGTACTTGCAAATGAACT
TAAAAAACTGTCATTAAATAACGAGGAAAAAGTAAAGGAGATAGCAATAA
GCAACCAAAGACTTCAAACTGAATTACAACTCGTCAAGATAGAATCTTCC
AAGAAGCTTTCTGAAGCTAAAGATACAAAAATGCACGGGACCATCCAGTA
AATTGATGAGGCTGTCCGAAGAATCAGATATCGAAGTGGAAAATTAGGAG
ATGGAAGTTTTCTCTCAATTAAAACACAACCTTGAACAAGATATATCGAA
TCAAAAGAAAACTGGCAATCCACACGAAATGGAAACATTGTATAAAGAGT
TAACACTTGCAAAAACCCATTTGCAACAAGCAGAGATCGATCGTGAAAAT
CTACGCAAACAACTAGAATGGTTCATGAAGAATCGGAAAAATGTGATGAC
CGATAACTGGACCCCATTTCCAACCATGGCGCGCCAGTTTAGTGATTCTG
AAGAAGAAGCAGAAGACTGTCGAGAGAAATCATCAAACGAATAGAACAAG
AGCTTGAGCTATTACACAGAGAACGACATAAGATGTTCAAACCACCCAAA
AAAGAAAAGGATCCCATCTTGGATTTAATATTACAGAAGTATATTCAAAT
TTCAAGAGATTCCATTCATGGACCTGTTGCTTTAAAAACGGACAAAAAGT
TGGTTTCGATAAATAAAGCGAGTGAAAATAAGAAAATAATTTTTGATAAA
ATTCCAGATGAGGCAAAGCTTGAGTCTGCCAACCTTGATGGTCACAATGT
GTCCTGCTTTACTGTTGGGGGCGAAAAAAGATTGTGCTTCACTGAGATAG
TACATACTATCTTGAAAGAGGTCAATGTACAAGAAATCTTCAAAAAGCGA
GACAGTTTGTTGATATTTACATCAAAATGTACACAGAAGCAGCTCGATGA
ACTGAAATACATGGAAGTATTACCCTGGACAACTACATCGTCAAATCTCA
TTACAGTGAGTGATGCCTTTCGACTTATTGGAGTTCTTCAAAGTAATCTT
GCCCCTAAAGCAGATCCTGTGAAAAGGACTGCGCTTAGTTTTGAGGTGTA
CCATGAATGTTTTGGTGGTTGTATCGGACTTATTGAGCCAGAGTTATACA
CAAGTTTGAGTGCACCGTGTATCAGATGCACCGAATGTAATGGTCTTTTT
TCAATACAGAAATTTGTTTCACATAACCATTCAAATTATGATGAAGTACA
CACGTGTCACTGGGGTTTTGACTCATCAAATTGGCGTTCTTACATTATGC
CAGTAGAGCAAAACCCTACACGAGAACTTGTGAATTTATGGATGTCTGTG
AAAAATAAATTCAACAGACCAGATCTGCATTATCAAACCATGGAAAAATC
AGATAATAAACGCCAAGATGCAGATTTCATGGCCTATATTAATTCACCAG
CAGACAACAAAAAGGCAATGGTCTCTCCAATAGAAAATCTACGAAACAGG
GAGGCTGCATCAGCATTTAGGCCTTGGTCACCTTCACCGAATTCGTCAAA
ATATCCCAACAGCTCACATAGCAAATTCCAATTCCCTGTACCCCAAAAAC
CGTCCAACAGGTGTGACAGTCACGAAAACTTGCCGCTATCTCCTGTTTAT
ATGAACTGTAAGCAATGTAAAACTGCTGCCGATGCATGCAACCGTGGTGG
CAGTAGAAATGATAATGAACAGAACTGTAACTGTAAGGACTGTACGCGCA
ATAAAGACTCTGTAGAAGGCTCAATACAAATGATACTCCAAGATTTTACA
AATAAAGATAACAGGCTGACTACTGACCCTAAAGATTTAGCAAAAGTACT
TGCAAATGAACTTAAAAAACTGTCATTAAATAACGAGGAAAAAGTAAAGG
AGATAGCAATAAGCAACCAAAGACTTCAAACTGAATTACAACTCGTCAAG
ATAGAATCTTCCAAGAAGCTTTCTGAAGCTAAAGATACAAAAATGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035754XLOC_035754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056760-exon-scaffold_282-1575043694:59837..61442TCONS_00056760-exon-scaffold_282-1575043694:59837..61442Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1575043694:57379..57420TCONS_00056760-exon-scaffold_282-1575043694:57379..57420Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1575043694:56851..57143TCONS_00056760-exon-scaffold_282-1575043694:56851..57143Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1575043694:56474..56543TCONS_00056760-exon-scaffold_282-1575043694:56474..56543Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1575043694:54480..56031TCONS_00056760-exon-scaffold_282-1575043694:54480..56031Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1575043694:54131..54426TCONS_00056760-exon-scaffold_282-1575043694:54131..54426Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1510915933:59837..61442TCONS_00056760-exon-scaffold_282-1510915933:59837..61442Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1510915933:57379..57420TCONS_00056760-exon-scaffold_282-1510915933:57379..57420Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1510915933:56851..57143TCONS_00056760-exon-scaffold_282-1510915933:56851..57143Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1510915933:56474..56543TCONS_00056760-exon-scaffold_282-1510915933:56474..56543Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1510915933:54480..56031TCONS_00056760-exon-scaffold_282-1510915933:54480..56031Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1510915933:54131..54426TCONS_00056760-exon-scaffold_282-1510915933:54131..54426Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1491911889:59837..61442TCONS_00056760-exon-scaffold_282-1491911889:59837..61442Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1491911889:57379..57420TCONS_00056760-exon-scaffold_282-1491911889:57379..57420Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1491911889:56851..57143TCONS_00056760-exon-scaffold_282-1491911889:56851..57143Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1491911889:56474..56543TCONS_00056760-exon-scaffold_282-1491911889:56474..56543Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1491911889:54480..56031TCONS_00056760-exon-scaffold_282-1491911889:54480..56031Clytia hemisphaericaexon
TCONS_00056760-exon-scaffold_282-1491911889:54131..54426TCONS_00056760-exon-scaffold_282-1491911889:54131..54426Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056760-proteinTCONS_00056760-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:54131..61442 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63011	1.22989	0	0.197797	5.85374	4.52941	3.73392	5.99379	3.79418	2.49171	1.08929	1.83271	6.83498	6.99424	9.64023	10.8625	13.961	8.90586	10.7836	13.6448	10.6946	10.4881	9.25353	10.5487	0.490051	0.0340888	7.01464	6.64412	4.19465	5.25982
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014890c-SKI_SMAD4-bd_dom
IPR003380Transform_Ski
IPR009061DNA-bd_dom_put
IPR010919SAND_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0046332SMAD binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046332 SMAD binding
Blast
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BLAST of TCONS_00056760 vs. Swiss-Prot (Human)
Match: SKI (Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.744e-43
Identity = 84/183 (45.90%), Postives = 115/183 (62.84%), Query Frame = 2 
Query:  392 LDGHNVSCFTVGGEKRLCFTEIVHTILKEVNVQEIFKKRDSLLIFTSKCTQKQLDELKYMEVLPWTTTSSNLITVSDAFRLI-GVLQSNLAP---KADPVKRTALSFE-------VYHECFGGCIGLIEPELYTSLSAPCIRCTECNGLFSIQKFVSHNHSNYDEVHTCHWGFDSSNWRSYIM 907
            L+G  +SCF VGGEKRLC  +I++++L++ ++Q+I    D L I+ S+CT  QL+ LK M +LP++  S  LIT +DA RL   +L     P   K +     AL  E       VYHECFG C GL+ PELY+S SA CI+C +C  ++   KFV H+H    E  TCHWGFDS+NWR+YI+
Sbjct:  105 LEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALGLELSERSVRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKAL-ENRTCHWGFDSANWRAYIL 286
The following BLAST results are available for this feature:
BLAST of TCONS_00056760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SKI4.744e-4345.90Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1[more]
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