TCONS_00056722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056722
Unique NameTCONS_00056722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056722 ID=TCONS_00056722|Name=TCONS_00056722|organism=Clytia hemisphaerica|type=transcript|length=835bp
ATTTGTCAGCTTTGAATGGAATGATAATTCATCCTGGTAAAACGAAAATC
ATGATCATTTCCAAACGTAAATTTATTTGTCCACTGCAGAACATCACCAT
GAATGGAAGAAACCTTGAAATTGTGGATCACCAGAAGGTTTTGGGAACCA
CCATTGATGATTCCTTATCCTGGAGAGtacaaactgataaaaacgaaaag
cACTCTcgcacaaaaatcaaaatgttgaaaCGTATGGTTATTCTTGGTAA
TATTGTCATGTCAAAATTTTACTTTGCAACGATTATCCCATCCGTGACTT
ATAATATAACAGTATGGGGCAATAATAATGTTATCTTGAAAAAGCTAGAA
ACTCTGCACGTACGAGCTGCTAGACGAATATTCCAACCACCAGACCATTT
GTCTGACGATGAGGTACTAAAGGCAGCTGGATGGATGAGTATTGAATATT
TGTATAAACGAAGACTGTTATGTCTTATGcacaaaatattttacagaaat
attgattcagaactatcaaatatgttttgtattttgaacTCAAAATCTAC
TCCTCAACGGAGGGACGGACAATCAAGTAAAAATTGCTAAACAATTCAAA
AGAACAAATCAAAATACTTTTGTTGTTAGAGCTTCCAAGATATGGAATGC
AATGCCGAATGAACTTACCAATGTATCAAAATTTGACATCTTTAGGAATA
AATTGAAAAATTTTAAAGATAAGatcaataaattttcttttacataTAAT
TCATACAATATTAGAGATGACTATGTATTTATTTAGTTAATCTTTATCAA
ACAACTTACACATAATTTCCCATGAACTTTGCGTT
Run BLAST on NCBI

protein sequence of TCONS_00056722-protein

>TCONS_00056722-protein ID=TCONS_00056722-protein|Name=TCONS_00056722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
LSALNGMIIHPGKTKIMIISKRKFICPLQNITMNGRNLEIVDHQKVLGTT
IDDSLSWRVQTDKNEKHSRTKIKMLKRMVILGNIVMSKFYFATIIPSVTY
NITVWGNNNVILKKLETLHVRAARRIFQPPDHLSDDEVLKAAGWMSIEYL
YKRRLLCLMHKIFYRNIDSELSNMFCILNSKSTPQRRDGQSSKNC
Run BLAST on NCBI

transcript from alignment at scaffold_281:460009..460843

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056722 ID=TCONS_00056722|Name=TCONS_00056722|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at scaffold_281:460009..460843 (Clytia hemisphaerica)
AACGCAAAGTTCATGGGAAATTATGTGTAAGTTGTTTGATAAAGATTAAC
TAAATAAATACATAGTCATCTCTAATATTGTATGAATTAtatgtaaaaga
aaatttattgatCTTATCTTTAAAATTTTTCAATTTATTCCTAAAGATGT
CAAATTTTGATACATTGGTAAGTTCATTCGGCATTGCATTCCATATCTTG
GAAGCTCTAACAACAAAAGTATTTTGATTTGTTCTTTTGAATTGTTTAGC
AATTTTTACTTGATTGTCCGTCCCTCCGTTGAGGAGTAGATTTTGAgttc
aaaatacaaaacatatttgatagttctgaatcaatatttctgtaaaatat
tttgtgCATAAGACATAACAGTCTTCGTTTATACAAATATTCAATACTCA
TCCATCCAGCTGCCTTTAGTACCTCATCGTCAGACAAATGGTCTGGTGGT
TGGAATATTCGTCTAGCAGCTCGTACGTGCAGAGTTTCTAGCTTTTTCAA
GATAACATTATTATTGCCCCATACTGTTATATTATAAGTCACGGATGGGA
TAATCGTTGCAAAGTAAAATTTTGACATGACAATATTACCAAGAATAACC
ATACGtttcaacattttgatttttgtgcgAGAGTgcttttcgtttttatc
agtttgtaCTCTCCAGGATAAGGAATCATCAATGGTGGTTCCCAAAACCT
TCTGGTGATCCACAATTTCAAGGTTTCTTCCATTCATGGTGATGTTCTGC
AGTGGACAAATAAATTTACGTTTGGAAATGATCATGATTTTCGTTTTACC
AGGATGAATTATCATTCCATTCAAAGCTGACAAAT

Coding sequence (CDS) from alignment at scaffold_281:460009..460843

>TCONS_00056722 ID=TCONS_00056722|Name=TCONS_00056722|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_281:460009..460843 (Clytia hemisphaerica)
TTAGCAATTTTTACTTGATTGTCCGTCCCTCCGTTGAGGAGTAGATTTTG
Agttcaaaatacaaaacatatttgatagttctgaatcaatatttctgtaa
aatattttgtgCATAAGACATAACAGTCTTCGTTTATACAAATATTCAAT
ACTCATCCATCCAGCTGCCTTTAGTACCTCATCGTCAGACAAATGGTCTG
GTGGTTGGAATATTCGTCTAGCAGCTCGTACGTGCAGAGTTTCTAGCTTT
TTCAAGATAACATTATTATTGCCCCATACTGTTATATTATAAGTCACGGA
TGGGATAATCGTTGCAAAGTAAAATTTTGACATGACAATATTACCAAGAA
TAACCATACGtttcaacattttgatttttgtgcgAGAGTgcttttcgttt
ttatcagtttgtaCTCTCCAGGATAAGGAATCATCAATGGTGGTTCCCAA
AACCTTCTGGTGATCCACAATTTCAAGGTTTCTTCCATTCATGGTGATGT
TCTGCAGTGGACAAATAAATTTACGTTTGGAAATGATCATGATTTTCGTT
TTACCAGGATGAATTATCATTCCATTCAAAGCTGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035739XLOC_035739Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056722-proteinTCONS_00056722-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056722-exon-scaffold_281-1491911889:460009..460843TCONS_00056722-exon-scaffold_281-1491911889:460009..460843Clytia hemisphaericaexon
TCONS_00056722-exon-scaffold_281-1510915933:460009..460843TCONS_00056722-exon-scaffold_281-1510915933:460009..460843Clytia hemisphaericaexon
TCONS_00056722-exon-scaffold_281-1575043694:460009..460843TCONS_00056722-exon-scaffold_281-1575043694:460009..460843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:460009..460843 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.725115	0.660406	0.582045	0.254969	5.46034	4.16308	3.57395	3.08396	2.06741	2.78385	2.36255	2.62458	3.36175	1.68783	2.86006	3.23251	2.49541	2.29317	3.53183	4.66546	1.73288	1.84483	1.36273	1.99249	2.44156	2.49747	5.04574	3.79016	3.82857	3.12443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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