TCONS_00056708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056708
Unique NameTCONS_00056708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056708 ID=TCONS_00056708|Name=TCONS_00056708|organism=Clytia hemisphaerica|type=transcript|length=526bp
NTGGAAACCCATTATCTATTATTACAAGCGAAGTATTGCATGTAAAGTTT
ATAAGATACATAACAACCTTGGTTCTCCATTACTCTCTGACCTGATTgtt
aaaacaaaatcaagaaagtCTCGCATTACACTGAAAATCGATATGTCTCC
ATTCAAATATGTTGCTTTCAAACGTTCATTTCGCTACAGAAATGCTATTG
TATGGAACAATATTCCAGACAGAATTAAAAATATGGACAACTTCAAATCC
TTCAAGAAGGATCTGAAAACATCAGACTGCcttgaaaaagttaattttaa
aaTGACAGGAAGAGCTCTTCTTCACGAAGACTTTATCTATTACTAAAGTT
ATATCATATATCATAATCGAAaacatatttattatttttatattttatat
atttataaaaacataacatatacatattttaaattatttatttgtAACAC
ATAAGATTTACATATTCTAAATCCTCTCCATTAATTTCTCAGACACACTT
TAATTAACCTAGCCTTAGTCTTATTC
Run BLAST on NCBI

protein sequence of TCONS_00056708-protein

>TCONS_00056708-protein ID=TCONS_00056708-protein|Name=TCONS_00056708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
WKPIIYYYKRSIACKVYKIHNNLGSPLLSDLIVKTKSRKSRITLKIDMSP
FKYVAFKRSFRYRNAIVWNNIPDRIKNMDNFKSFKKDLKTSDCLEKVNFK
MTGRALLHEDFIYY
Run BLAST on NCBI

transcript from alignment at scaffold_281:169239..169764

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056708 ID=TCONS_00056708|Name=TCONS_00056708|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at scaffold_281:169239..169764 (Clytia hemisphaerica)
GAATAAGACTAAGGCTAGGTTAATTAAAGTGTGTCTGAGAAATTAATGGA
GAGGATTTAGAATATGTAAATCTTATGTGTTacaaataaataatttaaaa
tatgtatatgttatgtttttataaatatataaaatataaaaataataaat
atgttTTCGATTATGATATATGATATAACTTTAGTAATAGATAAAGTCTT
CGTGAAGAAGAGCTCTTCCTGTCAttttaaaattaactttttcaagGCAG
TCTGATGTTTTCAGATCCTTCTTGAAGGATTTGAAGTTGTCCATATTTTT
AATTCTGTCTGGAATATTGTTCCATACAATAGCATTTCTGTAGCGAAATG
AACGTTTGAAAGCAACATATTTGAATGGAGACATATCGATTTTCAGTGTA
ATGCGAGactttcttgattttgttttaacAATCAGGTCAGAGAGTAATGG
AGAACCAAGGTTGTTATGTATCTTATAAACTTTACATGCAATACTTCGCT
TGTAATAATAGATAATGGGTTTCCAN

Coding sequence (CDS) from alignment at scaffold_281:169239..169764

>TCONS_00056708 ID=TCONS_00056708|Name=TCONS_00056708|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_281:169239..169764 (Clytia hemisphaerica)
TTAGTAATAGATAAAGTCTTCGTGAAGAAGAGCTCTTCCTGTCAttttaa
aattaactttttcaagGCAGTCTGATGTTTTCAGATCCTTCTTGAAGGAT
TTGAAGTTGTCCATATTTTTAATTCTGTCTGGAATATTGTTCCATACAAT
AGCATTTCTGTAGCGAAATGAACGTTTGAAAGCAACATATTTGAATGGAG
ACATATCGATTTTCAGTGTAATGCGAGactttcttgattttgttttaacA
ATCAGGTCAGAGAGTAATGGAGAACCAAGGTTGTTATGTATCTTATAAAC
TTTACATGCAATACTTCGCTTGTAATAATAGATAATGGGTTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035725XLOC_035725Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056708-proteinTCONS_00056708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056708-exon-scaffold_281-1491911889:169239..169764TCONS_00056708-exon-scaffold_281-1491911889:169239..169764Clytia hemisphaericaexon
TCONS_00056708-exon-scaffold_281-1510915933:169239..169764TCONS_00056708-exon-scaffold_281-1510915933:169239..169764Clytia hemisphaericaexon
TCONS_00056708-exon-scaffold_281-1575043694:169239..169764TCONS_00056708-exon-scaffold_281-1575043694:169239..169764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:169239..169764 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.90259	2.27606	1.59696	3.07207	2.474	0.596321	1.29498	2.02058	0.660173	2.02988	2.49452	1.96128	2.15855	2.60999	1.52521	1.22759	1.17622	0.947248	2.0225	2.20137	4.17983	6.01692	1.64779	2.31085	0.240321	0.911777	4.2176	4.36593	1.31475	1.39216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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