TCONS_00056700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056700
Unique NameTCONS_00056700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056700 ID=TCONS_00056700|Name=TCONS_00056700|organism=Clytia hemisphaerica|type=transcript|length=548bp
CGTACATGATCTCCTATCTTCAGTGGTGATAGGGGGCGGGTCCCGATGGC
AAGTCGTTCAGCAGTCTTGAGGTGACGTAGTCGTAGGGCTTCCTCACGCT
TCTGGAGGGTGTCTTGCCAAGTGGGATGCGGACGATACTTTCCAGGTAGG
ATTGGTACTGGTGATCGGATGGGATGGCCAAATGTGCATATAGCAGGTGA
GATTTGTGTGTCTGGCTGTGGTGTATTTCTGTAGATGAGCATGGCCTTTT
GGAATGCATCAGTGTCGAGGTTCCCACTAGCATCTGTATTGCCGACAATC
ATGCGTTTGACAGTCTTGACGCCAATTTCAGCATGGCTGTTGCTGTGAGG
GAAAGCAGTGGAAGATATACGTTGACGGACTCCCCATGACTTTAAGAAAG
ACTCTGTTGATCGGGAGGTGAATTCAGGACCACCATCGGATGCAAGCTCC
TCAGGAATGCCATACGTAACGAATGAGCGACGTAAGCAGTTGATCAATCC
AGCGTTCCCATCTTTAGCACGGTCCACGATTGGCCAATTGGAGTATCG
Run BLAST on NCBI

protein sequence of TCONS_00056700-protein

>TCONS_00056700-protein ID=TCONS_00056700-protein|Name=TCONS_00056700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
RYSNWPIVDRAKDGNAGLINCLRRSFVTYGIPEELASDGGPEFTSRSTES
FLKSWGVRQRISSTAFPHSNSHAEIGVKTVKRMIVGNTDASGNLDTDAFQ
KAMLIYRNTPQPDTQISPAICTFGHPIRSPVPILPGKYRPHPTWQDTLQK
REEALRLRHLKTAERLAIGTRPLSPLKIGDHV
Run BLAST on NCBI

transcript from alignment at scaffold_281:104017..104564

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056700 ID=TCONS_00056700|Name=TCONS_00056700|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at scaffold_281:104017..104564 (Clytia hemisphaerica)
CGATACTCCAATTGGCCAATCGTGGACCGTGCTAAAGATGGGAACGCTGG
ATTGATCAACTGCTTACGTCGCTCATTCGTTACGTATGGCATTCCTGAGG
AGCTTGCATCCGATGGTGGTCCTGAATTCACCTCCCGATCAACAGAGTCT
TTCTTAAAGTCATGGGGAGTCCGTCAACGTATATCTTCCACTGCTTTCCC
TCACAGCAACAGCCATGCTGAAATTGGCGTCAAGACTGTCAAACGCATGA
TTGTCGGCAATACAGATGCTAGTGGGAACCTCGACACTGATGCATTCCAA
AAGGCCATGCTCATCTACAGAAATACACCACAGCCAGACACACAAATCTC
ACCTGCTATATGCACATTTGGCCATCCCATCCGATCACCAGTACCAATCC
TACCTGGAAAGTATCGTCCGCATCCCACTTGGCAAGACACCCTCCAGAAG
CGTGAGGAAGCCCTACGACTACGTCACCTCAAGACTGCTGAACGACTTGC
CATCGGGACCCGCCCCCTATCACCACTGAAGATAGGAGATCATGTACG

Coding sequence (CDS) from alignment at scaffold_281:104017..104564

>TCONS_00056700 ID=TCONS_00056700|Name=TCONS_00056700|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_281:104017..104564 (Clytia hemisphaerica)
CGATACTCCAATTGGCCAATCGTGGACCGTGCTAAAGATGGGAACGCTGG
ATTGATCAACTGCTTACGTCGCTCATTCGTTACGTATGGCATTCCTGAGG
AGCTTGCATCCGATGGTGGTCCTGAATTCACCTCCCGATCAACAGAGTCT
TTCTTAAAGTCATGGGGAGTCCGTCAACGTATATCTTCCACTGCTTTCCC
TCACAGCAACAGCCATGCTGAAATTGGCGTCAAGACTGTCAAACGCATGA
TTGTCGGCAATACAGATGCTAGTGGGAACCTCGACACTGATGCATTCCAA
AAGGCCATGCTCATCTACAGAAATACACCACAGCCAGACACACAAATCTC
ACCTGCTATATGCACATTTGGCCATCCCATCCGATCACCAGTACCAATCC
TACCTGGAAAGTATCGTCCGCATCCCACTTGGCAAGACACCCTCCAGAAG
CGTGAGGAAGCCCTACGACTACGTCACCTCAAGACTGCTGAACGACTTGC
CATCGGGACCCGCCCCCTATCACCACTGAAGATAGGAGATCATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035717XLOC_035717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056700-exon-scaffold_281-1491911889:104017..104564TCONS_00056700-exon-scaffold_281-1491911889:104017..104564Clytia hemisphaericaexon
TCONS_00056700-exon-scaffold_281-1510915933:104017..104564TCONS_00056700-exon-scaffold_281-1510915933:104017..104564Clytia hemisphaericaexon
TCONS_00056700-exon-scaffold_281-1575043694:104017..104564TCONS_00056700-exon-scaffold_281-1575043694:104017..104564Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056700-proteinTCONS_00056700-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:104017..104564 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.104654	0.102054	0.118495	0	0.282264	0.111524	0.269099	0.503854	0.52914	0.655425	0.106029	0.209097	0	0.57826	0.178278	0.127547	0	0.241575	0.11125	0.116415	0.202371	0	0	0	0.112362	0.300842	0	0.153149	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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