TCONS_00056697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056697
Unique NameTCONS_00056697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056697 ID=TCONS_00056697|Name=TCONS_00056697|organism=Clytia hemisphaerica|type=transcript|length=507bp
CAGTGAATGATTTATTAATTAGTTAAGAACATtatttatgcttataaata
gtgattcttattgatAAATGTTCTATTCCTGAGCGGGGTACAGCTCCCCG
ATCTTCTGTAAGCCTTGTTTTTAACTGtgcaaaaaaactaatgagccaat
cctgagaaaagctggtaacagacaaatgaacggacgaacggacagggGTT
AATTTGTAAGACCACCggtggtaggtccaaaaaaacaatgtgtaattaat
aattcaaaaatcattCATACCAGGCTTATTAGTAAAGTTAACTATTGTCC
AATGTACTGCATGTCAGTTTTTGGTTCACATTTCAATGTTATTTAATACT
TTAACTCAGCATATCAATGTAGATACAATGGGTCTCTTCGTGCTCGATTA
CGATAAAGTCATTTCCCGAATAAAAGATATTTCTCCAATTGAAGTCACTA
TTCCATTATTCCAAATAAATCTAATCTTCTATCGAATCGGTTtgatccaa
ttttttc
Run BLAST on NCBI

transcript from alignment at scaffold_281:19266..19772

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056697 ID=TCONS_00056697|Name=TCONS_00056697|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_281:19266..19772 (Clytia hemisphaerica)
gaaaaaattggatcaAACCGATTCGATAGAAGATTAGATTTATTTGGAAT
AATGGAATAGTGACTTCAATTGGAGAAATATCTTTTATTCGGGAAATGAC
TTTATCGTAATCGAGCACGAAGAGACCCATTGTATCTACATTGATATGCT
GAGTTAAAGTATTAAATAACATTGAAATGTGAACCAAAAACTGACATGCA
GTACATTGGACAATAGTTAACTTTACTAATAAGCCTGGTATGaatgattt
ttgaattattaattacacattgtttttttggacctaccaccGGTGGTCTT
ACAAATTAACccctgtccgttcgtccgttcatttgtctgttaccagcttt
tctcaggattggctcattagtttttttgcaCAGTTAAAAACAAGGCTTAC
AGAAGATCGGGGAGCTGTACCCCGCTCAGGAATAGAACATTTatcaataa
gaatcactatttataagcataaataATGTTCTTAACTAATTAATAAATCA
TTCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035714XLOC_035714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056697-exon-scaffold_281-1491911889:19266..19772TCONS_00056697-exon-scaffold_281-1491911889:19266..19772Clytia hemisphaericaexon
TCONS_00056697-exon-scaffold_281-1510915933:19266..19772TCONS_00056697-exon-scaffold_281-1510915933:19266..19772Clytia hemisphaericaexon
TCONS_00056697-exon-scaffold_281-1575043694:19266..19772TCONS_00056697-exon-scaffold_281-1575043694:19266..19772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:19266..19772 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.466614	0.135867	0	0.160626	0.253813	0.612332	0.286625	0.101338	0.124289	1.20616	0.396526	0.158706	0.329777	1.01407	1.60435	1.52173	1.28458	0.128128	0.662215	1.49684	1.53312	0.685646	1.74412	0.255775	0	0.816445	0.528905	0.660975	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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