TCONS_00056694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056694
Unique NameTCONS_00056694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056694 ID=TCONS_00056694|Name=TCONS_00056694|organism=Clytia hemisphaerica|type=transcript|length=340bp
NNACAATGGGGGTCCGCATCGTTGGGCGATGAAGATAGAAACGATAAATT
CTTTCGTCTAATGGGAGGTTTCAAAAAGTCCAACGCCAGCAGCAGCGATC
AAAATGCATCAAAGTCATTTGCTTCGAATGCGCTAGATGCTAGGCGGCAA
GAAAGACTTTATAAAGGCCTTGAAAATCAATATGAACAAGCATTTCAAAC
GTCTCGACAGAATCGTGGTAAAGGGTTAGGATTTTCTCAATAGTTTTGCT
TGTTGTTGCTTTTCtatttgatgttttttgtatattttttataacCAGAT
TTTTATATATGGCTTAAGATTGGGAAAACTGACAGCAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_281:5694..6033

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056694 ID=TCONS_00056694|Name=TCONS_00056694|organism=Clytia hemisphaerica|type=transcript|length=340bp|location=Sequence derived from alignment at scaffold_281:5694..6033 (Clytia hemisphaerica)
CTCTGCTGTCAGTTTTCCCAATCTTAAGCCATATATAAAAATCTGgttat
aaaaaatatacaaaaaacatcaaataGAAAAGCAACAACAAGCAAAACTA
TTGAGAAAATCCTAACCCTTTACCACGATTCTGTCGAGACGTTTGAAATG
CTTGTTCATATTGATTTTCAAGGCCTTTATAAAGTCTTTCTTGCCGCCTA
GCATCTAGCGCATTCGAAGCAAATGACTTTGATGCATTTTGATCGCTGCT
GCTGGCGTTGGACTTTTTGAAACCTCCCATTAGACGAAAGAATTTATCGT
TTCTATCTTCATCGCCCAACGATGCGGACCCCCATTGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035711XLOC_035711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056694-exon-scaffold_281-1491911889:5694..6033TCONS_00056694-exon-scaffold_281-1491911889:5694..6033Clytia hemisphaericaexon
TCONS_00056694-exon-scaffold_281-1510915933:5694..6033TCONS_00056694-exon-scaffold_281-1510915933:5694..6033Clytia hemisphaericaexon
TCONS_00056694-exon-scaffold_281-1575043694:5694..6033TCONS_00056694-exon-scaffold_281-1575043694:5694..6033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:5694..6033 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
252.405	241.117	305.717	283.197	54.0521	34.9205	34.1219	47.5908	56.3692	48.0558	50.4855	67.9976	54.9348	67.3381	66.2795	82.6802	89.2504	70.4324	19.0006	24.7029	57.6058	51.7261	92.8447	77.9163	52.3382	49.8247	53.4742	40.424	56.8114	54.8193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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