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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056682 ID=TCONS_00056682|Name=TCONS_00056682|organism=Clytia hemisphaerica|type=transcript|length=1532bp
gttttcttttaaacttAGTTTTCTTTTAAACCTTTTGTGCTTTTATCCTA
ACTTTTTGATTACTTGATTGACTTTGAATCAGTATTTGAGAAATGCAAAA
TTGATCAGAATGTACTTGAAGCTATTATTAAAGCTTTTATAGCATTCTGT
ACTCTGTAAAATATTTCTATGTTTATAGTATAGATggttatatttttttc
acaaGACACAATTCCTAAtatctttgaattattttttatatcaGGTCACC
GATGAGCTGGACAGCCGATCATGAAGATATGTTGCTGCGAGAAATCCTAA
AAAATCATATTAACCGTATGTTCACAAGCTTGGAACTGTTCCTCGTGGAG
AAGCATGGAAAATGATCGCTGAATCACTGAATGAGTTGGATCATCCCAAA
TTTTCTGTGACACACAGATCAGTGAGAGAAAAATATGCATCTATGGAGAA
AGACCACAAGAAAAAGATGGCTAGCGAAGAAAGAGCTTCAGGTATAAATC
CAGAAGAGCTTACAGAGAAAGAAAAAGCACTTATAGATTTGCAGATATAG
AGTTAGCTGCAGATCAAGATCGCCAGAACTCGAGCAAAGCTATAGAAAAG
GAACGTGAAACAGCAGCTGAGGTACGAAAACAAATGATGGAAACCTACAG
TGAAACAAAGAAACGTAATTCTAAAGAAGACGAGAGTGAAGGCTCCTCAA
GTTCCAAGAAGAGAAGAAGATCTACAGATGATACTATGGTTTATTTACGT
GAAAAAATGCAAACGGAAAAACAATATCGTGAACGAGAACTTAAAATTGC
TGAGCAACGTGAAAACACAATGCAGCAGCTTATTTtgcaacaacagcaac
aaaatcAAGCAATGATGAGCTTGCTCTTTCcacaacaaaacaatttttca
aatggaaacaatttttcaaatggAAACAATTAGAccaaaatttgaacttt
ttcacttgttgttgttgatatttttttattgggagcattttgttttataa
tagATTTTTATTGTAATATACGTTATGTATTGTGTTAGCCTCCAGATTCA
GAGGATTTTTTTACCCTTTTAACTCTTTGTATTATTTACCCTTGTTGTGT
AAGGCATACACAGATACATACATGTATAACTAAGTTCAGTTAAATTCAGT
TATAAAATGTCTAAAATGTACACActatgaaacatttttttggttaACAA
GTATACTATGTTTATTTTCTTCTGAAAAACTCGAGTTGAAATATTAAATA
CACTTTGATAGAAAACCACATACAATCTAGTTACAAGCTTTTTTGTTGTG
ATTTTGTAACACctgtttatttttattcatattttaTATTTAAACTTTAT
CTGTTTATGAAAACAAGAGAGAACACAAAAAAATGAGAAgctttttttta
cttcttttgttttattgtagTCTGAATAAACTAATCATATCAATGAATTA
TTTGCATACAATAAATCATTTAGCAAAGTTATGCTAAATAATTTTGGATG
CTGGGAGGGTCACagtcaaaaaatcttgaaac Run BLAST on NCBI transcript from alignment at scaffold_281:6785..8316- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056682 ID=TCONS_00056682|Name=TCONS_00056682|organism=Clytia hemisphaerica|type=transcript|length=1532bp|location=Sequence derived from alignment at scaffold_281:6785..8316- (Clytia hemisphaerica)
GTTTTCTTTTAAACTTAGTTTTCTTTTAAACCTTTTGTGCTTTTATCCTA
ACTTTTTGATTACTTGATTGACTTTGAATCAGTATTTGAGAAATGCAAAA
TTGATCAGAATGTACTTGAAGCTATTATTAAAGCTTTTATAGCATTCTGT
ACTCTGTAAAATATTTCTATGTTTATAGTATAGATGGTTATATTTTTTTC
ACAAGACACAATTCCTAATATCTTTGAATTATTTTTTATATCAGGTCACC
GATGAGCTGGACAGCCGATCATGAAGATATGTTGCTGCGAGAAATCCTAA
AAAATCATATTAACCGTATGTTCACAAGCTTGGAACTGTTCCTCGTGGAG
AAGCATGGAAAATGATCGCTGAATCACTGAATGAGTTGGATCATCCCAAA
TTTTCTGTGACACACAGATCAGTGAGAGAAAAATATGCATCTATGGAGAA
AGACCACAAGAAAAAGATGGCTAGCGAAGAAAGAGCTTCAGGTATAAATC
CAGAAGAGCTTACAGAGAAAGAAAAAGCACTTATAGATTTGCAGATATAG
AGTTAGCTGCAGATCAAGATCGCCAGAACTCGAGCAAAGCTATAGAAAAG
GAACGTGAAACAGCAGCTGAGGTACGAAAACAAATGATGGAAACCTACAG
TGAAACAAAGAAACGTAATTCTAAAGAAGACGAGAGTGAAGGCTCCTCAA
GTTCCAAGAAGAGAAGAAGATCTACAGATGATACTATGGTTTATTTACGT
GAAAAAATGCAAACGGAAAAACAATATCGTGAACGAGAACTTAAAATTGC
TGAGCAACGTGAAAACACAATGCAGCAGCTTATTTTGCAACAACAGCAAC
AAAATCAAGCAATGATGAGCTTGCTCTTTCCACAACAAAACAATTTTTCA
AATGGAAACAATTTTTCAAATGGAAACAATTAGACCAAAATTTGAACTTT
TTCACTTGTTGTTGTTGATATTTTTTTATTGGGAGCATTTTGTTTTATAA
TAGATTTTTATTGTAATATACGTTATGTATTGTGTTAGCCTCCAGATTCA
GAGGATTTTTTTACCCTTTTAACTCTTTGTATTATTTACCCTTGTTGTGT
AAGGCATACACAGATACATACATGTATAACTAAGTTCAGTTAAATTCAGT
TATAAAATGTCTAAAATGTACACACTATGAAACATTTTTTTGGTTAACAA
GTATACTATGTTTATTTTCTTCTGAAAAACTCGAGTTGAAATATTAAATA
CACTTTGATAGAAAACCACATACAATCTAGTTACAAGCTTTTTTGTTGTG
ATTTTGTAACACCTGTTTATTTTTATTCATATTTTATATTTAAACTTTAT
CTGTTTATGAAAACAAGAGAGAACACAAAAAAATGAGAAGCTTTTTTTTA
CTTCTTTTGTTTTATTGTAGTCTGAATAAACTAATCATATCAATGAATTA
TTTGCATACAATAAATCATTTAGCAAAGTTATGCTAAATAATTTTGGATG
CTGGGAGGGTCACAGTCAAAAAATCTTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056682-exon-scaffold_281-1575043694:6785..8316 | TCONS_00056682-exon-scaffold_281-1575043694:6785..8316 | Clytia hemisphaerica | exon |
| TCONS_00056682-exon-scaffold_281-1510915933:6785..8316 | TCONS_00056682-exon-scaffold_281-1510915933:6785..8316 | Clytia hemisphaerica | exon |
| TCONS_00056682-exon-scaffold_281-1491911889:6785..8316 | TCONS_00056682-exon-scaffold_281-1491911889:6785..8316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:6785..8316 - |
Blast
The following BLAST results are available for this feature:
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