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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056678 ID=TCONS_00056678|Name=TCONS_00056678|organism=Clytia hemisphaerica|type=transcript|length=710bp
TCATAGATCCTTCCTATCCAGTCTCGTAAAGGCTAAGTCAGACgagtttg
aaaacgaaagttcgAAATTGAAAACCCACATTCTAAAAGGTTGTCTTTCG
GGAATTTCCCCTGGTGATGGAACAGAGCAGAATGAAAACCTTCATCGTTT
GTTGAACCGCAGTATGCTAAGAGatgtttctatTGTTGGTCATGAGCTGC
TGTTTGGAATATTGACCCTTTTGTTTTTCTACCACAACCAAAATAATCAA
GGAAAAAGATGCAACGGTAAAATAACACCTGTTTTTCCaccaaaaacaac
aaataaaagaaaaatccaaaaaaatatctTGCCAACAACAAAGGAACCAG
TGGAACAACTGATGTCAGATACGAACTCACATAAACCAATCATTGACgct
gttttcaaaattataaattCAACACAAAAAATTGTCGATGAAATGGACAA
AATGTGTTTACATAAAGGATTTCAAGGATTGGATATTTGGAATAGGACAC
TCCGCCGAGATTCAAGTCTTGATGATTGGAATGATCATCAAGCTATCCTT
GAATACGACTTAAATGCGTTTGGTGTTCAGACCATCGACATTCCTAAAGA
TGGAGACTGTTGTTTTCGGAGCATCTTGGTTCAAGTGTACCAGACCTTTG
ATTTATTCAACGATGAAACCAAAACATTACGTCAACATTTCAATGCTCTT
AACCTTGGCA Run BLAST on NCBI protein sequence of TCONS_00056678-protein >TCONS_00056678-protein ID=TCONS_00056678-protein|Name=TCONS_00056678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
HRSFLSSLVKAKSDEFENESSKLKTHILKGCLSGISPGDGTEQNENLHRL
LNRSMLRDVSIVGHELLFGILTLLFFYHNQNNQGKRCNGKITPVFPPKTT
NKRKIQKNILPTTKEPVEQLMSDTNSHKPIIDAVFKIINSTQKIVDEMDK
MCLHKGFQGLDIWNRTLRRDSSLDDWNDHQAILEYDLNAFGVQTIDIPKD
GDCCFRSILVQVYQTFDLFNDETKTLRQHFNALNLG Run BLAST on NCBI transcript from alignment at scaffold_281:202578..204301+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056678 ID=TCONS_00056678|Name=TCONS_00056678|organism=Clytia hemisphaerica|type=transcript|length=1724bp|location=Sequence derived from alignment at scaffold_281:202578..204301+ (Clytia hemisphaerica)
TCATAGATCCTTCCTATCCAGTCTCGTAAAGGCTAAGTCAGACgagtttg
aaaacgaaagttcgAAATTGAAAACCCACATTCTAAAAGGTTGTCTTTCG
GGAATTTCCCCTGGTGATGGAACAGAGCAGAATGAAAACCTTCATCGTTT
GTTGAACCGCAGTATGCTAAGAGGTTATATGTCCTTGCTAAGAAAAATAT
GTCTAAGATTATCAACGAAATAGCGGGGATAGCCAATGGCGGAACCGGAA
TAGCTGATCCgtgcggaatagctattccggcgattttttaactttttact
gTTACGGATTGTTATAAGCATAAGATTTGTCGTTTTTTCTTAGGGTCTGT
ATATAGCCTGTAAAAAAAACTCCCTCAGCGGAGTaatctttgaaatttaa
aataatcATCGTCGAGGCAATGTTGTGATTAGCCCTGGCAAGGATCAATC
AAAGAGATCGCTGTGAATTTTCAGTCAGCGTCGTGAGAAAGCAGTTTTTG
TGTAAATTagtctatttcataggattcgtgctttcagtacatgatttgtT
TCTACGtcaatgcagtaatcaaatttttattgtaaagcactcttttgtga
atTGAGACAATAGGaaacagttcttgaattcccaagtCATATAGGAtgaa
aaagtatcgagtcgaaccacaactatgagtagaaagttgtTATGtgtgtt
ttgataaatttgtataaaaaagtcCAATCATCTATCTCCCTTTCTTTTGT
CATGTTAATTATCGTGAGGGCTCTTTTATCAATGACCTTAATAAAAACAA
CTTGGAATAAATTTATTATCATNAAAAGTCCAATCATTTATCTCCCTTTC
TTTTGTCATGTTAATTATCGTGAGGGCTCTTTTATCAATGACCTTAATAA
AAACAACTTGGAATAAATTTATTATCATGGGAATTGTAAAGAAAgaaaca
cacaaaaaaacacacacaagaactttctacTCAGGgacatgttcaaactc
gatactttttttacaGACACCCTGTATAACGAAGTAAAAATCAGATTTGT
GCAATGTTCACCTGTAAATTTAATAGAAAATAGCATGTAACAGATGCACG
GCCTAATGCGGCCTTTGTAATCTAAAGTTGTGACGTAATCTAAAATTTGA
CCAGGGAATTTGACTTGATGATTTATTtctttcttagatgtttctatTGT
TGGTCATGAGCTGCTGTTTGGAATATTGACCCTTTTGTTTTTCTACCACA
ACCAAAATAATCAAGGAAAAAGATGCAACGGTAAAATAACACCTGTTTTT
CCaccaaaaacaacaaataaaagaaaaatccaaaaaaatatctTGCCAAC
AACAAAGGAACCAGTGGAACAACTGATGTCAGATACGAACTCACATAAAC
CAATCATTGACgctgttttcaaaattataaattCAACACAAAAAATTGTC
GATGAAATGGACAAAATGTGTTTACATAAAGGATTTCAAGGATTGGATAT
TTGGAATAGGACACTCCGCCGAGATTCAAGTCTTGATGATTGGAATGATC
ATCAAGCTATCCTTGAATACGACTTAAATGCGTTTGGTGTTCAGACCATC
GACATTCCTAAAGATGGAGACTGTTGTTTTCGGAGCATCTTGGTTCAAGT
GTACCAGACCTTTGATTTATTCAACGATGAAACCAAAACATTACGTCAAC
ATTTCAATGCTCTTAACCTTGGCA Coding sequence (CDS) from alignment at scaffold_281:202578..204301+ >TCONS_00056678 ID=TCONS_00056678|Name=TCONS_00056678|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_281:202578..204301+ (Clytia hemisphaerica)
CATAGATCCTTCCTATCCAGTCTCGTAAAGGCTAAGTCAGACgagtttga
aaacgaaagttcgAAATTGAAAACCCACATTCTAAAAGGTTGTCTTTCGG
GAATTTCCCCTGGTGATGGAACAGAGCAGAATGAAAACCTTCATCGTTTG
TTGAACCGCAGTATGCTAAGAGatgtttctatTGTTGGTCATGAGCTGCT
GTTTGGAATATTGACCCTTTTGTTTTTCTACCACAACCAAAATAATCAAG
GAAAAAGATGCAACGGTAAAATAACACCTGTTTTTCCaccaaaaacaaca
aataaaagaaaaatccaaaaaaatatctTGCCAACAACAAAGGAACCAGT
GGAACAACTGATGTCAGATACGAACTCACATAAACCAATCATTGACgctg
ttttcaaaattataaattCAACACAAAAAATTGTCGATGAAATGGACAAA
ATGTGTTTACATAAAGGATTTCAAGGATTGGATATTTGGAATAGGACACT
CCGCCGAGATTCAAGTCTTGATGATTGGAATGATCATCAAGCTATCCTTG
AATACGACTTAAATGCGTTTGGTGTTCAGACCATCGACATTCCTAAAGAT
GGAGACTGTTGTTTTCGGAGCATCTTGGTTCAAGTGTACCAGACCTTTGA
TTTATTCAACGATGAAACCAAAACATTACGTCAACATTTCAATGCTCTTA
ACCTTGGCCATAGATCCTTCCTATCCAGTCTCGTAAAGGCTAAGTCAGAC
gagtttgaaaacgaaagttcgAAATTGAAAACCCACATTCTAAAAGGTTG
TCTTTCGGGAATTTCCCCTGGTGATGGAACAGAGCAGAATGAAAACCTTC
ATCGTTTGTTGAACCGCAGTATGCTAAGAGatgtttctatTGTTGGTCAT
GAGCTGCTGTTTGGAATATTGACCCTTTTGTTTTTCTACCACAACCAAAA
TAATCAAGGAAAAAGATGCAACGGTAAAATAACACCTGTTTTTCCaccaa
aaacaacaaataaaagaaaaatccaaaaaaatatctTGCCAACAACAAAG
GAACCAGTGGAACAACTGATGTCAGATACGAACTCACATAAACCAATCAT
TGACgctgttttcaaaattataaattCAACACAAAAAATTGTCGATGAAA
TGGACAAAATGTGTTTACATAAAGGATTTCAAGGATTGGATATTTGGAAT
AGGACACTCCGCCGAGATTCAAGTCTTGATGATTGGAATGATCATCAAGC
TATCCTTGAATACGACTTAAATGCGTTTGGTGTTCAGACCATCGACATTC
CTAAAGATGGAGACTGTTGTTTTCGGAGCATCTTGGTTCAAGTGTACCAG
ACCTTTGATTTATTCAACGATGAAACCAAAACATTACGTCAACATTTCAA
TGCTCTTAACCTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056678-exon-scaffold_281-1491911889:202578..202750 | TCONS_00056678-exon-scaffold_281-1491911889:202578..202750 | Clytia hemisphaerica | exon |
| TCONS_00056678-exon-scaffold_281-1510915933:202578..202750 | TCONS_00056678-exon-scaffold_281-1510915933:202578..202750 | Clytia hemisphaerica | exon |
| TCONS_00056678-exon-scaffold_281-1575043694:202578..202750 | TCONS_00056678-exon-scaffold_281-1575043694:202578..202750 | Clytia hemisphaerica | exon |
| TCONS_00056678-exon-scaffold_281-1491911889:203765..204301 | TCONS_00056678-exon-scaffold_281-1491911889:203765..204301 | Clytia hemisphaerica | exon |
| TCONS_00056678-exon-scaffold_281-1510915933:203765..204301 | TCONS_00056678-exon-scaffold_281-1510915933:203765..204301 | Clytia hemisphaerica | exon |
| TCONS_00056678-exon-scaffold_281-1575043694:203765..204301 | TCONS_00056678-exon-scaffold_281-1575043694:203765..204301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:202578..204301 + |
Blast
The following BLAST results are available for this feature:
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