TCONS_00056641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056641
Unique NameTCONS_00056641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056641 ID=TCONS_00056641|Name=TCONS_00056641|organism=Clytia hemisphaerica|type=transcript|length=395bp
AGTGGATATTAACGTAAACAACATCGGCAAAATATTCGATCCACTTAAAA
GTGACCCAATCGCTTGCTCTCGCCCATCTGATTCAGATACTCTTGACGTC
GTCGAAGAAGAAGACTCCAAGGCTATGGAAGAAAATGCGTACGACATGTT
CTTCGAAATAGGAGTAAAAGTGGAGGTTCGAAGATCAAAGTCTGAAACTA
AAAGTGGTAAACGAGGAGGATGGTTGCAGGACTTTGATCATGAAAATGAC
TGGATAAAAGTGGAGTTTTCCAGTGAAGAAGAAATCATATACAAGATAAA
TGTAACCGAGCTTATTTATGGTGAAAAGCTGAGATTAAAGAACTCATTAT
TTTAGATTTAATTTCGTTTTAACATCATTACACGTTCTTTATAag
Run BLAST on NCBI

protein sequence of TCONS_00056641-protein

>TCONS_00056641-protein ID=TCONS_00056641-protein|Name=TCONS_00056641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
VDINVNNIGKIFDPLKSDPIACSRPSDSDTLDVVEEEDSKAMEENAYDMF
FEIGVKVEVRRSKSETKSGKRGGWLQDFDHENDWIKVEFSSEEEIIYKIN
VTELIYGEKLRLKNSLF
Run BLAST on NCBI

transcript from alignment at scaffold_278:2608..3002

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056641 ID=TCONS_00056641|Name=TCONS_00056641|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at scaffold_278:2608..3002 (Clytia hemisphaerica)
ctTATAAAGAACGTGTAATGATGTTAAAACGAAATTAAATCTAAAATAAT
GAGTTCTTTAATCTCAGCTTTTCACCATAAATAAGCTCGGTTACATTTAT
CTTGTATATGATTTCTTCTTCACTGGAAAACTCCACTTTTATCCAGTCAT
TTTCATGATCAAAGTCCTGCAACCATCCTCCTCGTTTACCACTTTTAGTT
TCAGACTTTGATCTTCGAACCTCCACTTTTACTCCTATTTCGAAGAACAT
GTCGTACGCATTTTCTTCCATAGCCTTGGAGTCTTCTTCTTCGACGACGT
CAAGAGTATCTGAATCAGATGGGCGAGAGCAAGCGATTGGGTCACTTTTA
AGTGGATCGAATATTTTGCCGATGTTGTTTACGTTAATATCCACT

Coding sequence (CDS) from alignment at scaffold_278:2608..3002

>TCONS_00056641 ID=TCONS_00056641|Name=TCONS_00056641|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_278:2608..3002 (Clytia hemisphaerica)
CTAAAATAATGAGTTCTTTAATCTCAGCTTTTCACCATAAATAAGCTCGG
TTACATTTATCTTGTATATGATTTCTTCTTCACTGGAAAACTCCACTTTT
ATCCAGTCATTTTCATGATCAAAGTCCTGCAACCATCCTCCTCGTTTACC
ACTTTTAGTTTCAGACTTTGATCTTCGAACCTCCACTTTTACTCCTATTT
CGAAGAACATGTCGTACGCATTTTCTTCCATAGCCTTGGAGTCTTCTTCT
TCGACGACGTCAAGAGTATCTGAATCAGATGGGCGAGAGCAAGCGATTGG
GTCACTTTTAAGTGGATCGAATATTTTGCCGATGTTGTTTACGTTAATAT
CCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035675XLOC_035675Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056641-proteinTCONS_00056641-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056641-exon-scaffold_278-1491911889:2608..3002TCONS_00056641-exon-scaffold_278-1491911889:2608..3002Clytia hemisphaericaexon
TCONS_00056641-exon-scaffold_278-1510915933:2608..3002TCONS_00056641-exon-scaffold_278-1510915933:2608..3002Clytia hemisphaericaexon
TCONS_00056641-exon-scaffold_278-1575043694:2608..3002TCONS_00056641-exon-scaffold_278-1575043694:2608..3002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_278supercontigscaffold_278:2608..3002 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.381481	0	0.431932	0	0.257224	1.21957	0.245227	1.14789	0.642934	0.597283	0	0.381096	1.39541	2.63481	0.649853	1.04609	1.00232	1.6144	0.405523	1.06088	0.368838	0	0	0.397659	1.22874	1.46216	0	0	0.211707	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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