TCONS_00056640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056640
Unique NameTCONS_00056640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056640 ID=TCONS_00056640|Name=TCONS_00056640|organism=Clytia hemisphaerica|type=transcript|length=354bp
TAGACAAAACATATACCACATACACTGTAGATAAACCTGGTAGATGCAAG
TTTGCATTACGAAAAGAtgagtctttcaaaataaaaataaaagagaaaaa
tgctttacctcttcttctctcttttatagctttcttgaaaaaaatatgat
atatactaattcaaaacaaaccatttacatAAATCACCTTGTTGCAAAGA
AGCTACAAAATAAAGTACTAACTAATAGGAGGCTAGactcaaaaaatgct
aaagAATTGCACAAGTAATTTCCACACCTACAGATTAACTTTCTGTCGCT
ATGTTTTGGAATCATTTTCCAGTCGGGTCCATCTGTATTAGCAGCAAGAA
TTGG
Run BLAST on NCBI

transcript from alignment at scaffold_277:446340..446693

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056640 ID=TCONS_00056640|Name=TCONS_00056640|organism=Clytia hemisphaerica|type=transcript|length=354bp|location=Sequence derived from alignment at scaffold_277:446340..446693 (Clytia hemisphaerica)
CCAATTCTTGCTGCTAATACAGATGGACCCGACTGGAAAATGATTCCAAA
ACATAGCGACAGAAAGTTAATCTGTAGGTGTGGAAATTACTTGTGCAATT
ctttagcattttttgagtCTAGCCTCCTATTAGTTAGTACTTTATTTTGT
AGCTTCTTTGCAACAAGGTGATTTatgtaaatggtttgttttgaattagt
atatatcatatttttttcaagaaagctataaaagagagaagaagaggtaa
agcatttttctcttttatttttattttgaaagactcaTCTTTTCGTAATG
CAAACTTGCATCTACCAGGTTTATCTACAGTGTATGTGGTATATGTTTTG
TCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035674XLOC_035674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056640-exon-scaffold_277-1491911889:446340..446693TCONS_00056640-exon-scaffold_277-1491911889:446340..446693Clytia hemisphaericaexon
TCONS_00056640-exon-scaffold_277-1510915933:446340..446693TCONS_00056640-exon-scaffold_277-1510915933:446340..446693Clytia hemisphaericaexon
TCONS_00056640-exon-scaffold_277-1575043694:446340..446693TCONS_00056640-exon-scaffold_277-1575043694:446340..446693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:446340..446693 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.489348	1.67017	1.10813	0.271033	2.63965	2.60736	2.8311	2.06146	1.23709	1.53234	0.247887	1.79247	2.6036	1.01395	1.25041	0.59639	0.551027	0.376523	4.42159	3.5382	10.6454	8.65409	1.40269	0.5101	0	0.468899	1.67748	2.86441	115.688	144.707
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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