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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056639 ID=TCONS_00056639|Name=TCONS_00056639|organism=Clytia hemisphaerica|type=transcript|length=1144bp
CAAGTTAATAGATGCAGAAGATAAGGGGCAGTGATTCGATTTTTAAAGAG
TTGATCAAAAAGTTGTACCCTCCTTTGTAAGATGAGAGTTGATATCTCTG
AGATGTGGAAAAGATCTAGCAAGTAGTTTTTACTGTACTTTGACAGGCCA
AGCAAGGATTTAAGACTGGATCTCCCACACCTGTTGAGCTGCAAGTTGGC
AGTTTGGTTAATGTCAACGATTTCCAGGCCATAAAGGAGTTGAGGTATTA
TTACTGTCTTGTAGATGGTCGCAATGCTGTAAGGGTGGAGTTTCCTTATA
CTTTTCCTTAAGCTTGTTTATTCTGTTTGTAAGATGTTGCTTCAAGGTGA
GTTCATTCGAGGTGATAGAATTTATCCATTCAAAACCGAGATGAGTTAGG
GTTCTTTTAGGGTGGATGTTGACGTTGTTGACGGTTATTGTCGGATTCGG
AATTGGTGATCTGCCTGATATTACAAATTGAGTTTTGTCGTTGAATTTTA
TCAAATGTTCACAACCTTTTTGTACACATTTATTTATCATCATCTGCAGG
CCTCTAAGGGTGGGACTGAGAAGAATAATGTCGTCGGCAAAGGCGATAAT
AGAGGTATCCATGTTGGGTAGGTAGGTACCAGCGTTCAGAGATTTGATGT
TTTCCAGTATGTCCTTTGTATAGAAATTATAGAGATGAGGAGAGAGGATA
GATCCTTGCCTTACCCCTTGTGATAGTTTGAAGGGTGCAGATTTATGGTT
TTGATAACGAACTGTGGCGTCTCCATTCATATATAGTTGGATTAAGGTTC
TTATTACAGTTTTTGGAAGAATACTTTCACTGTTGAGTTTCTGGAACAGC
TTTAGCCAGTTACAACAATCAAAGGCTTTCTCTGCGTCCAAGCTGCAAAT
ATACACTGGAGATCCTTGATTATTATAATGTCTAATTGTGTCATATATCA
CTGTTTCTGCATGCGTGGTAGACGATCTGGAGGTAAAGCCGAATTGGGAA
GGGCCGTGTTCTGTCAATTCTGGATGTTTGATTAGGATAATTTGTTCCAT
AAGCTTCGTTAAAATCGGTATCAGGCTAATCCCACGGTAGTTGTTTGGGT
CTTTTAAGCTCTTTCTGGTTGATTTTGCTAGCGGAATGATGATG Run BLAST on NCBI protein sequence of TCONS_00056639-protein >TCONS_00056639-protein ID=TCONS_00056639-protein|Name=TCONS_00056639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
IIIPLAKSTRKSLKDPNNYRGISLIPILTKLMEQIILIKHPELTEHGPSQ
FGFTSRSSTTHAETVIYDTIRHYNNQGSPVYICSLDAEKAFDCCNWLKLF
QKLNSESILPKTVIRTLIQLYMNGDATVRYQNHKSAPFKLSQGVRQGSIL
SPHLYNFYTKDILENIKSLNAGTYLPNMDTSIIAFADDIILLSPTLRGLQ
MMINKCVQKGCEHLIKFNDKTQFVISGRSPIPNPTITVNNVNIHPKRTLT
HLGFEWINSITSNELTLKQHLTNRINKLKEKYKETPPLQHCDHLQDSNNT
STPLWPGNR Run BLAST on NCBI transcript from alignment at scaffold_277:437934..439077 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056639 ID=TCONS_00056639|Name=TCONS_00056639|organism=Clytia hemisphaerica|type=transcript|length=1144bp|location=Sequence derived from alignment at scaffold_277:437934..439077 (Clytia hemisphaerica)
CATCATCATTCCGCTAGCAAAATCAACCAGAAAGAGCTTAAAAGACCCAA
ACAACTACCGTGGGATTAGCCTGATACCGATTTTAACGAAGCTTATGGAA
CAAATTATCCTAATCAAACATCCAGAATTGACAGAACACGGCCCTTCCCA
ATTCGGCTTTACCTCCAGATCGTCTACCACGCATGCAGAAACAGTGATAT
ATGACACAATTAGACATTATAATAATCAAGGATCTCCAGTGTATATTTGC
AGCTTGGACGCAGAGAAAGCCTTTGATTGTTGTAACTGGCTAAAGCTGTT
CCAGAAACTCAACAGTGAAAGTATTCTTCCAAAAACTGTAATAAGAACCT
TAATCCAACTATATATGAATGGAGACGCCACAGTTCGTTATCAAAACCAT
AAATCTGCACCCTTCAAACTATCACAAGGGGTAAGGCAAGGATCTATCCT
CTCTCCTCATCTCTATAATTTCTATACAAAGGACATACTGGAAAACATCA
AATCTCTGAACGCTGGTACCTACCTACCCAACATGGATACCTCTATTATC
GCCTTTGCCGACGACATTATTCTTCTCAGTCCCACCCTTAGAGGCCTGCA
GATGATGATAAATAAATGTGTACAAAAAGGTTGTGAACATTTGATAAAAT
TCAACGACAAAACTCAATTTGTAATATCAGGCAGATCACCAATTCCGAAT
CCGACAATAACCGTCAACAACGTCAACATCCACCCTAAAAGAACCCTAAC
TCATCTCGGTTTTGAATGGATAAATTCTATCACCTCGAATGAACTCACCT
TGAAGCAACATCTTACAAACAGAATAAACAAGCTTAAGGAAAAGTATAAG
GAAACTCCACCCTTACAGCATTGCGACCATCTACAAGACAGTAATAATAC
CTCAACTCCTTTATGGCCTGGAAATCGTTGACATTAACCAAACTGCCAAC
TTGCAGCTCAACAGGTGTGGGAGATCCAGTCTTAAATCCTTGCTTGGCCT
GTCAAAGTACAGTAAAAACTACTTGCTAGATCTTTTCCACATCTCAGAGA
TATCAACTCTCATCTTACAAAGGAGGGTACAACTTTTTGATCAACTCTTT
AAAAATCGAATCACTGCCCCTTATCTTCTGCATCTATTAACTTG Coding sequence (CDS) from alignment at scaffold_277:437934..439077 >TCONS_00056639 ID=TCONS_00056639|Name=TCONS_00056639|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_277:437934..439077 (Clytia hemisphaerica)
ATCATCATTCCGCTAGCAAAATCAACCAGAAAGAGCTTAAAAGACCCAAA
CAACTACCGTGGGATTAGCCTGATACCGATTTTAACGAAGCTTATGGAAC
AAATTATCCTAATCAAACATCCAGAATTGACAGAACACGGCCCTTCCCAA
TTCGGCTTTACCTCCAGATCGTCTACCACGCATGCAGAAACAGTGATATA
TGACACAATTAGACATTATAATAATCAAGGATCTCCAGTGTATATTTGCA
GCTTGGACGCAGAGAAAGCCTTTGATTGTTGTAACTGGCTAAAGCTGTTC
CAGAAACTCAACAGTGAAAGTATTCTTCCAAAAACTGTAATAAGAACCTT
AATCCAACTATATATGAATGGAGACGCCACAGTTCGTTATCAAAACCATA
AATCTGCACCCTTCAAACTATCACAAGGGGTAAGGCAAGGATCTATCCTC
TCTCCTCATCTCTATAATTTCTATACAAAGGACATACTGGAAAACATCAA
ATCTCTGAACGCTGGTACCTACCTACCCAACATGGATACCTCTATTATCG
CCTTTGCCGACGACATTATTCTTCTCAGTCCCACCCTTAGAGGCCTGCAG
ATGATGATAAATAAATGTGTACAAAAAGGTTGTGAACATTTGATAAAATT
CAACGACAAAACTCAATTTGTAATATCAGGCAGATCACCAATTCCGAATC
CGACAATAACCGTCAACAACGTCAACATCCACCCTAAAAGAACCCTAACT
CATCTCGGTTTTGAATGGATAAATTCTATCACCTCGAATGAACTCACCTT
GAAGCAACATCTTACAAACAGAATAAACAAGCTTAAGGAAAAGTATAAGG
AAACTCCACCCTTACAGCATTGCGACCATCTACAAGACAGTAATAATACC
TCAACTCCTTTATGGCCTGGAAATCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056639-exon-scaffold_277-1491911889:437934..439077 | TCONS_00056639-exon-scaffold_277-1491911889:437934..439077 | Clytia hemisphaerica | exon |
| TCONS_00056639-exon-scaffold_277-1510915933:437934..439077 | TCONS_00056639-exon-scaffold_277-1510915933:437934..439077 | Clytia hemisphaerica | exon |
| TCONS_00056639-exon-scaffold_277-1575043694:437934..439077 | TCONS_00056639-exon-scaffold_277-1575043694:437934..439077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_277 | supercontig | scaffold_277:437934..439077 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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