TCONS_00056632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056632
Unique NameTCONS_00056632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056632 ID=TCONS_00056632|Name=TCONS_00056632|organism=Clytia hemisphaerica|type=transcript|length=995bp
gtttttttgaaaaaatagacaaaaacatATGGATTTACCACGAAGTGAAG
ATCTGCTAAATCTTGCACATAGTGCTGCTGGTAGAAATGTAACCAATAAA
ATTGATAGCCCTGAAATCGCCAAGCTTAAAGAAGAACATACCAGAGAAAT
GGAGAAAATGATGTTTGAAAATAAGATCAAATTTCTCGAATCTGAGAATA
ATAATCGAATGAGAATTATGCAGCTTGAAAAGGATAACCAATCATTATCT
CACCAGCTCGAACTCGTCAAACTCAAAGCTGCCCATGGGGTCGAATCAAA
GAAATGGATCGCTGACAGTGAAACAGAAAAGAAAGTGCTTCAACAACAAA
CTTGCCGAGAAAGACAATAAAATGACCGTTAAGGAAAACGACTTCAAAAT
GCACCTGACAGAGAAAGACCAAGAGATAGCTGCCAAGGAAAATGAGTTTA
AACTAAAACTAGCTGATATGGAAAATGCAAGTCAACTTAAAATTGCTGGG
ATTGAAAATCAATACAAAatgaaattgcttgaaaaagaaaaagaaatttc
agaaaaagtgAATGAGCTAAATGTTAGAATGAAAGAGTTGAAATCACCAA
CATGGCGAGTTTCTGAAAGATTTGCTTGGGGTGCTgataaattctttgaa
aagaacCCGGTGGAAATTAATCTGTTTGCATCATATCAGGATTGGTACAA
AGAAATCAGTTTATTGTTGCAGCAAGGAGAAATCGAATCTGTTTCTAGTG
GTACGTCGAAATACGTTTTCATCAAAAGTAATTGTGGCAAATATTTTAAT
TCGTTATGGCTGATAACACACTGATGGTATCTTTTATATCGAAGATAACG
TACAACAGTATTGGAAACGAATCAATTTCGTTCTTTTACATCCTTTAAAG
TAtagtaaaagtttgaaaatgtaTGAATCGCGTGAATGTGACCGCTATGA
ACGGTGGGATGCTCATAGCGTTACGAATGGCTTTTACCATGGCGA
Run BLAST on NCBI

protein sequence of TCONS_00056632-protein

>TCONS_00056632-protein ID=TCONS_00056632-protein|Name=TCONS_00056632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MGSNQRNGSLTVKQKRKCFNNKLAEKDNKMTVKENDFKMHLTEKDQEIAA
KENEFKLKLADMENASQLKIAGIENQYKMKLLEKEKEISEKVNELNVRMK
ELKSPTWRVSERFAWGADKFFEKNPVEINLFASYQDWYKEISLLLQQGEI
ESVSSGTSKYVFIKSNCGKYFNSLWLITH
Run BLAST on NCBI

transcript from alignment at scaffold_277:181932..182926

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056632 ID=TCONS_00056632|Name=TCONS_00056632|organism=Clytia hemisphaerica|type=transcript|length=995bp|location=Sequence derived from alignment at scaffold_277:181932..182926 (Clytia hemisphaerica)
TCGCCATGGTAAAAGCCATTCGTAACGCTATGAGCATCCCACCGTTCATA GCGGTCACATTCACGCGATTCAtacattttcaaacttttactaTACTTTA AAGGATGTAAAAGAACGAAATTGATTCGTTTCCAATACTGTTGTACGTTA TCTTCGATATAAAAGATACCATCAGTGTGTTATCAGCCATAACGAATTAA AATATTTGCCACAATTACTTTTGATGAAAACGTATTTCGACGTACCACTA GAAACAGATTCGATTTCTCCTTGCTGCAACAATAAACTGATTTCTTTGTA CCAATCCTGATATGATGCAAACAGATTAATTTCCACCGGgttcttttcaa agaatttatcAGCACCCCAAGCAAATCTTTCAGAAACTCGCCATGTTGGT GATTTCAACTCTTTCATTCTAACATTTAGCTCATTcactttttctgaaat ttctttttctttttcaagcaatttcatTTTGTATTGATTTTCAATCCCAG CAATTTTAAGTTGACTTGCATTTTCCATATCAGCTAGTTTTAGTTTAAAC TCATTTTCCTTGGCAGCTATCTCTTGGTCTTTCTCTGTCAGGTGCATTTT GAAGTCGTTTTCCTTAACGGTCATTTTATTGTCTTTCTCGGCAAGTTTGT TGTTGAAGCACTTTCTTTTCTGTTTCACTGTCAGCGATCCATTTCTTTGA TTCGACCCCATGGGCAGCTTTGAGTTTGACGAGTTCGAGCTGGTGAGATA ATGATTGGTTATCCTTTTCAAGCTGCATAATTCTCATTCGATTATTATTC TCAGATTCGAGAAATTTGATCTTATTTTCAAACATCATTTTCTCCATTTC TCTGGTATGTTCTTCTTTAAGCTTGGCGATTTCAGGGCTATCAATTTTAT TGGTTACATTTCTACCAGCAGCACTATGTGCAAGATTTAGCAGATCTTCA CTTCGTGGTAAATCCATatgtttttgtctattttttcaaaaaaac

Coding sequence (CDS) from alignment at scaffold_277:181932..182926

>TCONS_00056632 ID=TCONS_00056632|Name=TCONS_00056632|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_277:181932..182926 (Clytia hemisphaerica)
TCAGTGTGTTATCAGCCATAACGAATTAAAATATTTGCCACAATTACTTT
TGATGAAAACGTATTTCGACGTACCACTAGAAACAGATTCGATTTCTCCT
TGCTGCAACAATAAACTGATTTCTTTGTACCAATCCTGATATGATGCAAA
CAGATTAATTTCCACCGGgttcttttcaaagaatttatcAGCACCCCAAG
CAAATCTTTCAGAAACTCGCCATGTTGGTGATTTCAACTCTTTCATTCTA
ACATTTAGCTCATTcactttttctgaaatttctttttctttttcaagcaa
tttcatTTTGTATTGATTTTCAATCCCAGCAATTTTAAGTTGACTTGCAT
TTTCCATATCAGCTAGTTTTAGTTTAAACTCATTTTCCTTGGCAGCTATC
TCTTGGTCTTTCTCTGTCAGGTGCATTTTGAAGTCGTTTTCCTTAACGGT
CATTTTATTGTCTTTCTCGGCAAGTTTGTTGTTGAAGCACTTTCTTTTCT
GTTTCACTGTCAGCGATCCATTTCTTTGATTCGACCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035666XLOC_035666Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056632-proteinTCONS_00056632-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056632-exon-scaffold_277-1491911889:181932..182926TCONS_00056632-exon-scaffold_277-1491911889:181932..182926Clytia hemisphaericaexon
TCONS_00056632-exon-scaffold_277-1510915933:181932..182926TCONS_00056632-exon-scaffold_277-1510915933:181932..182926Clytia hemisphaericaexon
TCONS_00056632-exon-scaffold_277-1575043694:181932..182926TCONS_00056632-exon-scaffold_277-1575043694:181932..182926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:181932..182926 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.812467 0.616221 0.255533 0.0499997 4.80872 3.99232 1.91502 2.49908 1.14108 1.64899 0.457299 0.360733 0.630404 0.467629 0.102521 0.330063 2.33801 2.84788 2.01523 1.95817 1.17831 0.638598 1.60435 1.12923 0.436155 0.47576 0.495135 0.594474 0.35069 0.408341
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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