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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056632 ID=TCONS_00056632|Name=TCONS_00056632|organism=Clytia hemisphaerica|type=transcript|length=995bp
gtttttttgaaaaaatagacaaaaacatATGGATTTACCACGAAGTGAAG
ATCTGCTAAATCTTGCACATAGTGCTGCTGGTAGAAATGTAACCAATAAA
ATTGATAGCCCTGAAATCGCCAAGCTTAAAGAAGAACATACCAGAGAAAT
GGAGAAAATGATGTTTGAAAATAAGATCAAATTTCTCGAATCTGAGAATA
ATAATCGAATGAGAATTATGCAGCTTGAAAAGGATAACCAATCATTATCT
CACCAGCTCGAACTCGTCAAACTCAAAGCTGCCCATGGGGTCGAATCAAA
GAAATGGATCGCTGACAGTGAAACAGAAAAGAAAGTGCTTCAACAACAAA
CTTGCCGAGAAAGACAATAAAATGACCGTTAAGGAAAACGACTTCAAAAT
GCACCTGACAGAGAAAGACCAAGAGATAGCTGCCAAGGAAAATGAGTTTA
AACTAAAACTAGCTGATATGGAAAATGCAAGTCAACTTAAAATTGCTGGG
ATTGAAAATCAATACAAAatgaaattgcttgaaaaagaaaaagaaatttc
agaaaaagtgAATGAGCTAAATGTTAGAATGAAAGAGTTGAAATCACCAA
CATGGCGAGTTTCTGAAAGATTTGCTTGGGGTGCTgataaattctttgaa
aagaacCCGGTGGAAATTAATCTGTTTGCATCATATCAGGATTGGTACAA
AGAAATCAGTTTATTGTTGCAGCAAGGAGAAATCGAATCTGTTTCTAGTG
GTACGTCGAAATACGTTTTCATCAAAAGTAATTGTGGCAAATATTTTAAT
TCGTTATGGCTGATAACACACTGATGGTATCTTTTATATCGAAGATAACG
TACAACAGTATTGGAAACGAATCAATTTCGTTCTTTTACATCCTTTAAAG
TAtagtaaaagtttgaaaatgtaTGAATCGCGTGAATGTGACCGCTATGA
ACGGTGGGATGCTCATAGCGTTACGAATGGCTTTTACCATGGCGA Run BLAST on NCBI protein sequence of TCONS_00056632-protein >TCONS_00056632-protein ID=TCONS_00056632-protein|Name=TCONS_00056632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MGSNQRNGSLTVKQKRKCFNNKLAEKDNKMTVKENDFKMHLTEKDQEIAA
KENEFKLKLADMENASQLKIAGIENQYKMKLLEKEKEISEKVNELNVRMK
ELKSPTWRVSERFAWGADKFFEKNPVEINLFASYQDWYKEISLLLQQGEI
ESVSSGTSKYVFIKSNCGKYFNSLWLITH Run BLAST on NCBI transcript from alignment at scaffold_277:181932..182926 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056632 ID=TCONS_00056632|Name=TCONS_00056632|organism=Clytia hemisphaerica|type=transcript|length=995bp|location=Sequence derived from alignment at scaffold_277:181932..182926 (Clytia hemisphaerica)
TCGCCATGGTAAAAGCCATTCGTAACGCTATGAGCATCCCACCGTTCATA
GCGGTCACATTCACGCGATTCAtacattttcaaacttttactaTACTTTA
AAGGATGTAAAAGAACGAAATTGATTCGTTTCCAATACTGTTGTACGTTA
TCTTCGATATAAAAGATACCATCAGTGTGTTATCAGCCATAACGAATTAA
AATATTTGCCACAATTACTTTTGATGAAAACGTATTTCGACGTACCACTA
GAAACAGATTCGATTTCTCCTTGCTGCAACAATAAACTGATTTCTTTGTA
CCAATCCTGATATGATGCAAACAGATTAATTTCCACCGGgttcttttcaa
agaatttatcAGCACCCCAAGCAAATCTTTCAGAAACTCGCCATGTTGGT
GATTTCAACTCTTTCATTCTAACATTTAGCTCATTcactttttctgaaat
ttctttttctttttcaagcaatttcatTTTGTATTGATTTTCAATCCCAG
CAATTTTAAGTTGACTTGCATTTTCCATATCAGCTAGTTTTAGTTTAAAC
TCATTTTCCTTGGCAGCTATCTCTTGGTCTTTCTCTGTCAGGTGCATTTT
GAAGTCGTTTTCCTTAACGGTCATTTTATTGTCTTTCTCGGCAAGTTTGT
TGTTGAAGCACTTTCTTTTCTGTTTCACTGTCAGCGATCCATTTCTTTGA
TTCGACCCCATGGGCAGCTTTGAGTTTGACGAGTTCGAGCTGGTGAGATA
ATGATTGGTTATCCTTTTCAAGCTGCATAATTCTCATTCGATTATTATTC
TCAGATTCGAGAAATTTGATCTTATTTTCAAACATCATTTTCTCCATTTC
TCTGGTATGTTCTTCTTTAAGCTTGGCGATTTCAGGGCTATCAATTTTAT
TGGTTACATTTCTACCAGCAGCACTATGTGCAAGATTTAGCAGATCTTCA
CTTCGTGGTAAATCCATatgtttttgtctattttttcaaaaaaac Coding sequence (CDS) from alignment at scaffold_277:181932..182926 >TCONS_00056632 ID=TCONS_00056632|Name=TCONS_00056632|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_277:181932..182926 (Clytia hemisphaerica)
TCAGTGTGTTATCAGCCATAACGAATTAAAATATTTGCCACAATTACTTT
TGATGAAAACGTATTTCGACGTACCACTAGAAACAGATTCGATTTCTCCT
TGCTGCAACAATAAACTGATTTCTTTGTACCAATCCTGATATGATGCAAA
CAGATTAATTTCCACCGGgttcttttcaaagaatttatcAGCACCCCAAG
CAAATCTTTCAGAAACTCGCCATGTTGGTGATTTCAACTCTTTCATTCTA
ACATTTAGCTCATTcactttttctgaaatttctttttctttttcaagcaa
tttcatTTTGTATTGATTTTCAATCCCAGCAATTTTAAGTTGACTTGCAT
TTTCCATATCAGCTAGTTTTAGTTTAAACTCATTTTCCTTGGCAGCTATC
TCTTGGTCTTTCTCTGTCAGGTGCATTTTGAAGTCGTTTTCCTTAACGGT
CATTTTATTGTCTTTCTCGGCAAGTTTGTTGTTGAAGCACTTTCTTTTCT
GTTTCACTGTCAGCGATCCATTTCTTTGATTCGACCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056632-exon-scaffold_277-1491911889:181932..182926 | TCONS_00056632-exon-scaffold_277-1491911889:181932..182926 | Clytia hemisphaerica | exon |
| TCONS_00056632-exon-scaffold_277-1510915933:181932..182926 | TCONS_00056632-exon-scaffold_277-1510915933:181932..182926 | Clytia hemisphaerica | exon |
| TCONS_00056632-exon-scaffold_277-1575043694:181932..182926 | TCONS_00056632-exon-scaffold_277-1575043694:181932..182926 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_277 | supercontig | scaffold_277:181932..182926 . |
Blast
The following BLAST results are available for this feature:
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