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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056630 ID=TCONS_00056630|Name=TCONS_00056630|organism=Clytia hemisphaerica|type=transcript|length=1139bp
GTGGCTTTTAAGTGTTTAAGGTTAGATACACGTGCAAATTGGTATAATGT
AAAACCGATACAGTGCACACATTTAAATCAACTCTGGAACATTAAAATCT
CGTGTATTGTAAAGAGGTTAGTTCTACACAACAATGTTAAGTCAATACTG
AGGTTTCACAAACTAGATGTTTGGTTCCTTTGATTGGTGATTCTTGGTGG
GGCGAACACACCACGCCTTCTAAGCAAGCGTTTACAAGCAAGTCTGAACC
CTGCATCTTTCCAAACATAAATGAAAGGGTTGAAGCAAGAATTGGACAGG
CTGGTATAAGTAACGAACaagtttatatttttcaaaacatcctCTGATAC
GACATCAGgttttaaccaaaacaatatAAGCAACAACACGTTGAAGAATA
AAGCAGGGACAAAAGCTACCAAGTAGAAGGCAATCAAGGTCAACACTTTA
TTGACCAGTTTTTGTTCCTGCTCATGCCTTTTCCTCTCTGCAACTTGATT
GGGCCTGTTGGTATCTTGAGCAAGGCGTTTCCCACTCTGTCGAAATCCTT
TCCAAACGAAATAATAGCTACAACATAAGATTATCGTGGATACGATTACA
AGAAACTGGGTACCAACCATGTAAACAATGGGATAGATGTTGCTGCCTAT
TCCGAACATGAGCGTTATGGAACAATACAGGCCAATGATGATGTTGATTT
TTCGGTGGGTCAAAATATCATGATATTGAGCGGGTTTTGAGATAGAGANC
GTtaaaattttgttcgattttgaTCGTTGTGAAGGTTGCCAAAGAACAAT
GAGACAAAATGTATTCCCAAAAGCTGCAATGATACATGGTGGTATGAAGA
AAATGGTTGCAATTATTTGTATTGTTGATGGCAGCAGAAAGAAGAAAAGT
CCAGGGCAAACCATATCGTCTTACGACTCCTAATCTCCAGTGCCGCATCG
GTAATTGTCTTAATGGTTattgactttctttttataagaagctATATATG
GTCGAATGTTTTTGGCGTCCGCGACTCAAAGCTGGGGTTCCCGGTTAGAG
TTCGGACAGAGTGACCTCTCCAATTATTCCGTTTTGTTCATATATAGCTG
ATTCAGCAGACCCGTGAAGTCAATCGAAAAGAATGTCTC Run BLAST on NCBI protein sequence of TCONS_00056630-protein >TCONS_00056630-protein ID=TCONS_00056630-protein|Name=TCONS_00056630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MVCPGLFFFLLPSTIQIIATIFFIPPCIIAAFGNTFCLIVLWQPSQRSKS
NKILTXSISKPAQYHDILTHRKINIIIGLYCSITLMFGIGSNIYPIVYMV
GTQFLVIVSTIILCCSYYFVWKGFRQSGKRLAQDTNRPNQVAERKRHEQE
QKLVNKVLTLIAFYLVAFVPALFFNVLLLILFWLKPDVVSEDVLKNINLF
VTYTSLSNSCFNPFIYVWKDAGFRLACKRLLRRRGVFAPPRITNQRNQTS
SL Run BLAST on NCBI transcript from alignment at scaffold_277:149292..150430 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056630 ID=TCONS_00056630|Name=TCONS_00056630|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at scaffold_277:149292..150430 (Clytia hemisphaerica)
GAGACATTCTTTTCGATTGACTTCACGGGTCTGCTGAATCAGCTATATAT
GAACAAAACGGAATAATTGGAGAGGTCACTCTGTCCGAACTCTAACCGGG
AACCCCAGCTTTGAGTCGCGGACGCCAAAAACATTCGACCATATATagct
tcttataaaaagaaagtcaatAACCATTAAGACAATTACCGATGCGGCAC
TGGAGATTAGGAGTCGTAAGACGATATGGTTTGCCCTGGACTTTTCTTCT
TTCTGCTGCCATCAACAATACAAATAATTGCAACCATTTTCTTCATACCA
CCATGTATCATTGCAGCTTTTGGGAATACATTTTGTCTCATTGTTCTTTG
GCAACCTTCACAACGAtcaaaatcgaacaaaattttaACGNTCTCTATCT
CAAAACCCGCTCAATATCATGATATTTTGACCCACCGAAAAATCAACATC
ATCATTGGCCTGTATTGTTCCATAACGCTCATGTTCGGAATAGGCAGCAA
CATCTATCCCATTGTTTACATGGTTGGTACCCAGTTTCTTGTAATCGTAT
CCACGATAATCTTATGTTGTAGCTATTATTTCGTTTGGAAAGGATTTCGA
CAGAGTGGGAAACGCCTTGCTCAAGATACCAACAGGCCCAATCAAGTTGC
AGAGAGGAAAAGGCATGAGCAGGAACAAAAACTGGTCAATAAAGTGTTGA
CCTTGATTGCCTTCTACTTGGTAGCTTTTGTCCCTGCTTTATTCTTCAAC
GTGTTGTTGCTTatattgttttggttaaaacCTGATGTCGTATCAGagga
tgttttgaaaaatataaacttGTTCGTTACTTATACCAGCCTGTCCAATT
CTTGCTTCAACCCTTTCATTTATGTTTGGAAAGATGCAGGGTTCAGACTT
GCTTGTAAACGCTTGCTTAGAAGGCGTGGTGTGTTCGCCCCACCAAGAAT
CACCAATCAAAGGAACCAAACATCTAGTTTGTGAAACCTCAGTATTGACT
TAACATTGTTGTGTAGAACTAACCTCTTTACAATACACGAGATTTTAATG
TTCCAGAGTTGATTTAAATGTGTGCACTGTATCGGTTTTACATTATACCA
ATTTGCACGTGTATCTAACCTTAAACACTTAAAAGCCAC Coding sequence (CDS) from alignment at scaffold_277:149292..150430 >TCONS_00056630 ID=TCONS_00056630|Name=TCONS_00056630|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_277:149292..150430 (Clytia hemisphaerica)
ATGGTTTGCCCTGGACTTTTCTTCTTTCTGCTGCCATCAACAATACAAAT
AATTGCAACCATTTTCTTCATACCACCATGTATCATTGCAGCTTTTGGGA
ATACATTTTGTCTCATTGTTCTTTGGCAACCTTCACAACGAtcaaaatcg
aacaaaattttaACGNTCTCTATCTCAAAACCCGCTCAATATCATGATAT
TTTGACCCACCGAAAAATCAACATCATCATTGGCCTGTATTGTTCCATAA
CGCTCATGTTCGGAATAGGCAGCAACATCTATCCCATTGTTTACATGGTT
GGTACCCAGTTTCTTGTAATCGTATCCACGATAATCTTATGTTGTAGCTA
TTATTTCGTTTGGAAAGGATTTCGACAGAGTGGGAAACGCCTTGCTCAAG
ATACCAACAGGCCCAATCAAGTTGCAGAGAGGAAAAGGCATGAGCAGGAA
CAAAAACTGGTCAATAAAGTGTTGACCTTGATTGCCTTCTACTTGGTAGC
TTTTGTCCCTGCTTTATTCTTCAACGTGTTGTTGCTTatattgttttggt
taaaacCTGATGTCGTATCAGaggatgttttgaaaaatataaacttGTTC
GTTACTTATACCAGCCTGTCCAATTCTTGCTTCAACCCTTTCATTTATGT
TTGGAAAGATGCAGGGTTCAGACTTGCTTGTAAACGCTTGCTTAGAAGGC
GTGGTGTGTTCGCCCCACCAAGAATCACCAATCAAAGGAACCAAACATCT
AGTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056630-exon-scaffold_277-1491911889:149292..150430 | TCONS_00056630-exon-scaffold_277-1491911889:149292..150430 | Clytia hemisphaerica | exon |
| TCONS_00056630-exon-scaffold_277-1510915933:149292..150430 | TCONS_00056630-exon-scaffold_277-1510915933:149292..150430 | Clytia hemisphaerica | exon |
| TCONS_00056630-exon-scaffold_277-1575043694:149292..150430 | TCONS_00056630-exon-scaffold_277-1575043694:149292..150430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_277 | supercontig | scaffold_277:149292..150430 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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