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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056629 ID=TCONS_00056629|Name=TCONS_00056629|organism=Clytia hemisphaerica|type=transcript|length=1745bp
AGCCCTAAGAGCTAGATAGAgtactttggctgaaaagtttgctgtggtta
ggtaggaaatcctacatgggtcacgtgatattacaaaagaatttcagcgc
ttgataAATCAGAAGATtcacgggttttcgaaaacaatagcaactatatt
ttttccgatattcactttttttgcctgcgatggctttaaagcacgacatt
tagccctttgggctttacagaaatctgtgagTCACACATTGGATAGTTCA
TCTGTCTTCAACTTTGTTCAATGCAAAACCTCCTTGATCGTACCGAGACT
GTCGTTAACTCAAAGCTTGTATCTCCTGCTCCAGTAACTTTAACGCTACT
TTTATTCCTCGATTTCATTCTGGAAACGGTACGTGAGAACCGATAACTTT
TTCGTCTTCGAATACTAGCTCTGATACTTGAATTCGAAAACACGTTAAAA
AGTACACTGAGGATACCGGAACATAAAGCGGGCAATAAAACAAACCGGTA
CATCCGGGCTTTTGCTTCTTCACTTTCGAAAGATCGATCATAAAATCCGG
TATAGCCAAGGACCCAACCGCACATCATGGGTAGCCAACAAATAATGAAA
ATCCCTAAAACAACGCCAAGGATTTTAACCACTTTTGTCCTATAACTTTT
CTTCAGTACTTTATTCTGATTTTGTAATCCGGGTCCTGTATTCGAGCAAC
GTTCGTTTCTGGTACTGTATAATTTACAGACCACCATGAAATAAATGAGC
ACCAAAACTAAAAATGGTATGACAAAACCAATTAACACTGTGATTGCCCC
GTAAAAACGCATGAACGATTCACCTAACGGATACGTACGTAAACAAAATG
GTAGCTCACCGTAAGCGTACAACGTCAAGTAATTTGGAATCATACTAACA
ATAGATACCATCCAGAAAATAACATAAAGTCGCTTACATCTTTCCTTTGT
AAATCGGCTAGCAGATAATGGTTTATTAATCAGCATATAGCGTGTATAAG
TCATCGAGCAGAGTAGATAAATACAACAGTTTGCAGCCGCGAAGAATAGG
CTTAATCCATCTTTGATACCGCATAGGAAATGTATACTTGCCTCTGCGTT
CAGTTTGGAGAATGTACGAACATTAAGTAAAACGTACGGTATAAAACCTA
TATACTGAACAATATAGGCAAAACTGAGTTGTGATAAACTCAAATTGAAA
TGATTCTGTTTAATGATTTTGCTTCTGCTGTTGTATAAAGCGACGAAAAG
AGTATTAAGGATGATTCCTGCTATAACAAGTGTCATGGTCATGATGGAGT
AGATGAGATTCCCTTCAGGTGTGAAGATTTGTACTGATGACGTGTTTGTC
AAGTTTCCAATGTTGTAAGACATATCGCTGTCcagtattttctttgtttc
tgcTCGGTTATAAACACTTTGATAATTTTCAGTGGTTGATATACTGAGAT
GTACTAAACAAGGTCCTGAATcttgaattgaaatttattaTTTCTGCATC
CAATGAGCGTCCACTTTGACCCAGATTTCCTTTTCGCCACCCGCTGATGA
TCCTACTAGTTAATCTCCTTGTTGGGCTCAAACTGCTGAAAGATTTTGTT
GCTGATTGTCTTGTGATAGACTGTTCTTTAAAGCCAGCAATCAAACTAAT
ATATCCAGCCGGTTTACGATCGTAATTATTAGTTGTTTCCAGTAGTTTCC
TCAGCAAATCAAGACTTGTTATTACTTATATCAGATTGTTTTGAC Run BLAST on NCBI protein sequence of TCONS_00056629-protein >TCONS_00056629-protein ID=TCONS_00056629-protein|Name=TCONS_00056629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MSYNIGNLTNTSSVQIFTPEGNLIYSIMTMTLVIAGIILNTLFVALYNSR
SKIIKQNHFNLSLSQLSFAYIVQYIGFIPYVLLNVRTFSKLNAEASIHFL
CGIKDGLSLFFAAANCCIYLLCSMTYTRYMLINKPLSASRFTKERCKRLY
VIFWMVSIVSMIPNYLTLYAYGELPFCLRTYPLGESFMRFYGAITVLIGF
VIPFLVLVLIYFMVVCKLYSTRNERCSNTGPGLQNQNKVLKKSYRTKVVK
ILGVVLGIFIICWLPMMCGWVLGYTGFYDRSFESEEAKARMYRFVLLPAL
CSGILSVLFNVFSNSSIRASIRRRKSYRFSRTVSRMKSRNKSSVKVTGAG
DTSFELTTVSVRSRRFCIEQS Run BLAST on NCBI transcript from alignment at scaffold_277:103517..105261 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056629 ID=TCONS_00056629|Name=TCONS_00056629|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at scaffold_277:103517..105261 (Clytia hemisphaerica)
GTCAAAACAATCTGATATAAGTAATAACAAGTCTTGATTTGCTGAGGAAA
CTACTGGAAACAACTAATAATTACGATCGTAAACCGGCTGGATATATTAG
TTTGATTGCTGGCTTTAAAGAACAGTCTATCACAAGACAATCAGCAACAA
AATCTTTCAGCAGTTTGAGCCCAACAAGGAGATTAACTAGTAGGATCATC
AGCGGGTGGCGAAAAGGAAATCTGGGTCAAAGTGGACGCTCATTGGATGC
AGAAAtaataaatttcaattcaagATTCAGGACCTTGTTTAGTACATCTC
AGTATATCAACCACTGAAAATTATCAAAGTGTTTATAACCGAgcagaaac
aaagaaaatactgGACAGCGATATGTCTTACAACATTGGAAACTTGACAA
ACACGTCATCAGTACAAATCTTCACACCTGAAGGGAATCTCATCTACTCC
ATCATGACCATGACACTTGTTATAGCAGGAATCATCCTTAATACTCTTTT
CGTCGCTTTATACAACAGCAGAAGCAAAATCATTAAACAGAATCATTTCA
ATTTGAGTTTATCACAACTCAGTTTTGCCTATATTGTTCAGTATATAGGT
TTTATACCGTACGTTTTACTTAATGTTCGTACATTCTCCAAACTGAACGC
AGAGGCAAGTATACATTTCCTATGCGGTATCAAAGATGGATTAAGCCTAT
TCTTCGCGGCTGCAAACTGTTGTATTTATCTACTCTGCTCGATGACTTAT
ACACGCTATATGCTGATTAATAAACCATTATCTGCTAGCCGATTTACAAA
GGAAAGATGTAAGCGACTTTATGTTATTTTCTGGATGGTATCTATTGTTA
GTATGATTCCAAATTACTTGACGTTGTACGCTTACGGTGAGCTACCATTT
TGTTTACGTACGTATCCGTTAGGTGAATCGTTCATGCGTTTTTACGGGGC
AATCACAGTGTTAATTGGTTTTGTCATACCATTTTTAGTTTTGGTGCTCA
TTTATTTCATGGTGGTCTGTAAATTATACAGTACCAGAAACGAACGTTGC
TCGAATACAGGACCCGGATTACAAAATCAGAATAAAGTACTGAAGAAAAG
TTATAGGACAAAAGTGGTTAAAATCCTTGGCGTTGTTTTAGGGATTTTCA
TTATTTGTTGGCTACCCATGATGTGCGGTTGGGTCCTTGGCTATACCGGA
TTTTATGATCGATCTTTCGAAAGTGAAGAAGCAAAAGCCCGGATGTACCG
GTTTGTTTTATTGCCCGCTTTATGTTCCGGTATCCTCAGTGTACTTTTTA
ACGTGTTTTCGAATTCAAGTATCAGAGCTAGTATTCGAAGACGAAAAAGT
TATCGGTTCTCACGTACCGTTTCCAGAATGAAATCGAGGAATAAAAGTAG
CGTTAAAGTTACTGGAGCAGGAGATACAAGCTTTGAGTTAACGACAGTCT
CGGTACGATCAAGGAGGTTTTGCATTGAACAAAGTTGAAGACAGATGAAC
TATCCAATGTGTGActcacagatttctgtaaagcccaaagggctaaatgt
cgtgctttaaagccatcgcaggcaaaaaaagtgaatatcggaaaaaatat
agttgctattgttttcgaaaacccgtgaATCTTCTGATTtatcaagcgct
gaaattcttttgtaatatcacgtgacccatgtaggatttcctacctaacc
acagcaaacttttcagccaaagtacTCTATCTAGCTCTTAGGGCT Coding sequence (CDS) from alignment at scaffold_277:103517..105261 >TCONS_00056629 ID=TCONS_00056629|Name=TCONS_00056629|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_277:103517..105261 (Clytia hemisphaerica)
ATGTCTTACAACATTGGAAACTTGACAAACACGTCATCAGTACAAATCTT
CACACCTGAAGGGAATCTCATCTACTCCATCATGACCATGACACTTGTTA
TAGCAGGAATCATCCTTAATACTCTTTTCGTCGCTTTATACAACAGCAGA
AGCAAAATCATTAAACAGAATCATTTCAATTTGAGTTTATCACAACTCAG
TTTTGCCTATATTGTTCAGTATATAGGTTTTATACCGTACGTTTTACTTA
ATGTTCGTACATTCTCCAAACTGAACGCAGAGGCAAGTATACATTTCCTA
TGCGGTATCAAAGATGGATTAAGCCTATTCTTCGCGGCTGCAAACTGTTG
TATTTATCTACTCTGCTCGATGACTTATACACGCTATATGCTGATTAATA
AACCATTATCTGCTAGCCGATTTACAAAGGAAAGATGTAAGCGACTTTAT
GTTATTTTCTGGATGGTATCTATTGTTAGTATGATTCCAAATTACTTGAC
GTTGTACGCTTACGGTGAGCTACCATTTTGTTTACGTACGTATCCGTTAG
GTGAATCGTTCATGCGTTTTTACGGGGCAATCACAGTGTTAATTGGTTTT
GTCATACCATTTTTAGTTTTGGTGCTCATTTATTTCATGGTGGTCTGTAA
ATTATACAGTACCAGAAACGAACGTTGCTCGAATACAGGACCCGGATTAC
AAAATCAGAATAAAGTACTGAAGAAAAGTTATAGGACAAAAGTGGTTAAA
ATCCTTGGCGTTGTTTTAGGGATTTTCATTATTTGTTGGCTACCCATGAT
GTGCGGTTGGGTCCTTGGCTATACCGGATTTTATGATCGATCTTTCGAAA
GTGAAGAAGCAAAAGCCCGGATGTACCGGTTTGTTTTATTGCCCGCTTTA
TGTTCCGGTATCCTCAGTGTACTTTTTAACGTGTTTTCGAATTCAAGTAT
CAGAGCTAGTATTCGAAGACGAAAAAGTTATCGGTTCTCACGTACCGTTT
CCAGAATGAAATCGAGGAATAAAAGTAGCGTTAAAGTTACTGGAGCAGGA
GATACAAGCTTTGAGTTAACGACAGTCTCGGTACGATCAAGGAGGTTTTG
CATTGAACAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056629-exon-scaffold_277-1491911889:103517..105261 | TCONS_00056629-exon-scaffold_277-1491911889:103517..105261 | Clytia hemisphaerica | exon |
| TCONS_00056629-exon-scaffold_277-1510915933:103517..105261 | TCONS_00056629-exon-scaffold_277-1510915933:103517..105261 | Clytia hemisphaerica | exon |
| TCONS_00056629-exon-scaffold_277-1575043694:103517..105261 | TCONS_00056629-exon-scaffold_277-1575043694:103517..105261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_277 | supercontig | scaffold_277:103517..105261 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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