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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056574 ID=TCONS_00056574|Name=TCONS_00056574|organism=Clytia hemisphaerica|type=transcript|length=2299bp gggggggtacttaggcaaaaatgggtgctgggtatgtgcgtgccttaagg gtagggtttttcaccctcccaaagtctctctaagggttaccaaaACAANg agggctatgcatgttagcctccactgagggtcgttgtaaaacatggagta gctccatggagtactccaatggagtaccttttggagtactctaaaaatat tgcagaCCAGATTTTAGATCGCCGCGAGAGGAAAATAAAGACCTGTATAA TTTTGTATTTGCTCTAAAACCANAAGCCGATACGGAATACAAAAACCCGC CCCCTCAATCCgcaaaagatcaaaacaaaaaaaatattgtcaTGTACTGG CAGGCACTGACTTGACATTTTGAGAGGAAGGAAGAGGAAGTTCTTCAGCA ATACCTTTAACTAAGATGGATACAAAATAATCGCAAGGTCAGCTTAGAGA AGATCCAAATTAAAGggtgtcggaattacaTGAGGGCTGTCAACAtcaga ccaacttacgaTCTGTCAACAAATATGGGTATCAAAGAGACATTATCCGA TATCAATGCTGACCATCCTTTACACAAAGCCAAAGCTTTTTACTTCTTAT TCGATGCAGCAATCAAAACACTACCTCGACACCTGGGAATGTATTACAAA CACACCTTACTACTCTCACCTCACCAAGTTGCCATGTTGTTATCTGTTAG ACCTTTCCTATTAATATTTGGTTCACCTGTCCTTGGTGGTATAGCTGATA AAACCAATAAATTTCGACATGTGATGTTGATCTCGTTATTGACATTCCTG GTTACTTACGTTCTAGTCCCATTGGTTGAACCGGTGGAAGGTTTTAATTG CAAAGAACACGTACACTTCAATCATTCGGCCAATCACATCAATATTTCAA CGCCAGTTTTTCATAAACTTCATAAACAAATTGTGAGCAATGGTGCCAGA GTAAAGGTGGAAGTTCACAAGTACTACCAAATGGTCAACGAAGAAGGCAC CAATAATCACCAATATGACGGGAACTTGATGCAGGACTTGTACTACACGT GGCCGTTCGACATGTATGAGTACGAACTTACGGATGATATAACACAGAAA GTATTCAACGTCATTCTCTTAATCACAATTTTTGGAGAATTCTTCGCATC ACCGTCAGAAACGTTTGCCGATCTATATACGCTACGTGCTTTAGGCTCTA ACCATAACCGCTATGGTTGGCAAATAATATCTGGTTTATTTGGTTTCTTC ATTGTTTCAATCGCTTTTGCAGCGTCATCAGACATACGCTTACAGTTGAA AGATGATTTCTGTCATGTTGGTCACGTGATCAATTACAGCCCTTATTTAT TCGTAGTATACGGCCTTGTTGGCGCATGTATCCTGATTGCCGCTACATTC CAATACCGCCTTTTTCCGAAACCTACCGCCCCACGTAAAGATGACGGGTG TAATTGCGATTGTAATTTCATCAAGGCGTTACCAGTACTAGCAGAAACCC CCGCTTACACTGCATACGCTATTGCTGTTATATTTTGTGGATTTGCCTGT GGTGTAAAACAGCTTTATATCTACCATTATCTTACAGAGCTGGGTGGTCC TCATCAGCTCATATTTGTAGTTTTGAGTGTCCACTTTATATCAGGTTTCT TGGCACTCTTAGCGTCACCCTACCTACTTGAGCGTTTTGGAGCATCAAAT CTTATAGCAGGTGGTTTGCTTTTGAATGGAATCTCATTTGTTGTATATTC ACTCATCAAAAATCCATGGTTGATCTTAATTGTTGAACCTTTCCATGGGC TCTGTCAAGAATTATCTTGGGTCGCTATTGTCACTTACGCTGGTGCGCCG CCACAAATTGGGGCGGCTCTACAGGGTACGGTACATGGTTTACATAAAGG TCTTGGACTAGCTTTAGGCTATTATGCAGTATGTGTTTTAATCTTGAAAT TTGGTTACGTCGGTTTCTTTTTAGCTACtggtttgttattttttgttgtg tttggattttatttatttgtcaTTCGAATGTATCCGAAAGAGGAAAGCAT CGCGGACAGTTATAGTTGTTATTCCAAGATTCATCAACAGGACGTGGACA GTGACGGCGAAGAGACGGTTGAAATGTTTCAGAAAGGTGATTATAATAAC GAAACATTGGATAGATCTTTCTTAGAAtgattttggtttgatttagcGAG GTTGAGCATGAGGATATACAATATGCTTTTTTATACAACCTAATAGGTCT CAGTACTAAtttgataaatataattttcttgTAATTCGACATTAGCAAT Run BLAST on NCBI protein sequence of TCONS_00056574-protein >TCONS_00056574-protein ID=TCONS_00056574-protein|Name=TCONS_00056574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
MRAVNIRPTYDLSTNMGIKETLSDINADHPLHKAKAFYFLFDAAIKTLPR HLGMYYKHTLLLSPHQVAMLLSVRPFLLIFGSPVLGGIADKTNKFRHVML ISLLTFLVTYVLVPLVEPVEGFNCKEHVHFNHSANHINISTPVFHKLHKQ IVSNGARVKVEVHKYYQMVNEEGTNNHQYDGNLMQDLYYTWPFDMYEYEL TDDITQKVFNVILLITIFGEFFASPSETFADLYTLRALGSNHNRYGWQII SGLFGFFIVSIAFAASSDIRLQLKDDFCHVGHVINYSPYLFVVYGLVGAC ILIAATFQYRLFPKPTAPRKDDGCNCDCNFIKALPVLAETPAYTAYAIAV IFCGFACGVKQLYIYHYLTELGGPHQLIFVVLSVHFISGFLALLASPYLL ERFGASNLIAGGLLLNGISFVVYSLIKNPWLILIVEPFHGLCQELSWVAI VTYAGAPPQIGAALQGTVHGLHKGLGLALGYYAVCVLILKFGYVGFFLAT GLLFFVVFGFYLFVIRMYPKEESIADSYSCYSKIHQQDVDSDGEETVEMF QKGDYNNETLDRSFLE Run BLAST on NCBI transcript from alignment at scaffold_277:255178..276640+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056574 ID=TCONS_00056574|Name=TCONS_00056574|organism=Clytia hemisphaerica|type=transcript|length=21463bp|location=Sequence derived from alignment at scaffold_277:255178..276640+ (Clytia hemisphaerica) gggggggtacttaggcaaaaatgggtgctgggtatgtgcgtgccttaagg
gtagggtttttcaccctcccaaagtctctctaagggttaccaaaACAANg
agggctatgcatgttagcctccactgagggtcgttgtaaaacatggagta
gctccatggagtactccaatggagtaccttttggagtactctaaaaatat
tgcagaCCAGATTTTAGATCGCCGCGAGAGGAAAATAAAGACCTGTATAA
TTTTGTATTTGCTCTAAAACCANAAGCCGATACGGAATACAAAAACCCGC
CCCCTCAATCCgcaaaagatcaaaacaaaaaaaatattgtcaTGTACTGG
CAGGCACTGACTTGACATTTTGAGAGGAAGGAAGAGGAAGTTCTTCAGCA
ATACCTTTAACTAAGATGGATACAAAATAATCGCAAGGTCAGCTTAGAGA
AGATCCAAATTAAAGGTATATTTTCTATTTGATACATTTTAAGTATAGAT
ATTCACAAGTGTAGCTTCATCAGTATTGAGTTTGTTGTGAGTGAAAGTGA
ATATTTTAGAGTCCCTAGAGTCCCCTTGCCCGCAGTTGGGGATGTCAGAT
GGTATAAATCAAGGAAGTTCTCAAGAACAATCGAATCAATCTAATGTAAT
CAAACGTGATCGAATAAttgacctaaagctctaaagtagcatctaataac
atgaaaaccagaatatgattcttcaaatgggaatcaaaactataaagtgc
acttacaaacatcaatttgtcagatctaacaaaatNNNNNNNNNNNNNNN
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NNNNTCactttttatatcctttcatgtcatctgcatcacattgagtatga
aattctcaTATCAAAGAAATAAGTTGGCGGACTCCATTTATTGTGATTGT
Cttattatttttgttgattgaagtgtattttgtcaataaaatgacaatga
atAATTTAAAGTCAATCTGTtaacaaaaagacaaaagaaaaatattgctt
aAGAAAGCTCTAGTGCCCTACTGGTGTTACATAAATAATATAACACATAA
TACCATATACAATTACACTGATATTATATGTATTATTATAAAGTGTTTGA
TATATCAGAGCTATTCTGCAAGCTAAATCTGGTCTGTTAATTGTAGAATC
AACGAANtgtcaatcattttctcaagcgaagagtacgcgaagcggttata
gctttacgatagtgccgcaggtcatcaatggatagtcaGACCTGCCAACT
TAAGATGTTCATTTggcgtgagataaaaatttcgaaggaaaatcCGAAAT
CTTAGCccgatttttccgattttccgaCTTCGGAAAacggaaaaattttt
ccaaaaaattggaaaatcagggaaatttattccgaaaatcggaaaatcgg
gaattttttttccaaaaatcggaaaatcagggaaatttattccgaattga
attgaattgaattgaatatattttcgctgcaacacagcaggataacccct
tacaaaaaaaaaatagatttctctaatacaatggggaacctagaaNNNNN
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NNNNNNNNNNNNNNNNNNNNNTTCCAGTTTAGATGATTGTCAAGGTGAAC
ACCCAAATACTTCACACTCTTACTTGGTGATAGAATTTTCCCGCAAAGCT
TAATTCTTGGAATACAGTCCATCTATCAGTCCCATCGAAAAtgggaaaat
cggggaaatttctttcaaatatcaaaaatgcgtcagaaatcaaacttttg
aaaaattgcgtgAGACAGTGTTGGAATGCGTGAGTCTCACgtccaatgcg
tgagagttggcacctctggatagtattcaattatcattacccctttattt
tcattcctagaacttttgcaaaaaaaaggaaaaatagaaaagttgtattt
tttactgctttattcacatactgaatttgaaagatcttctatgtggcgtt
ttttttgcaaacttcaaaaaactgatttttgtcacGCTtatgcgggactt
tggcttaagtgcttgagtgcagcatagggtacaaagtccaaacatgcgtt
tcccgtaatttttgtgtgaagagttacagttaggtctatactgccagacg
atctcaatcgaacgccAGTCTGGAAAGAAGAGAAAATTTACGCCAGcgga
atcaacgatcgaaccagtcgaaccaaatcgaacgcaatcgaccgattgaa
attcgattgtcgaacgcaatcgaatctcaatcgaacgtcaaaattctggg
taatattcgattggtttgattgttgttcgactggttcaattgtcgattcc
gttcgattgagatcgtctggctttattcttgcagcttcccaacatccaaa
ctctcaaacatcacaagccgaatgaaattactttcgatttcNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNAATTTGTGATATTCATCGCTCTGACAGGT
ATTTTAGGGGGTACTCCATTAGGTACTCCATTGgagtactccatggagct
aatccatgttttacaacgacccctccactgatgcaagttacccaatctca
cggtattgtgttcaatagactttttttaaagaggcgaccctgttgaataa
ttaaggagtccagcataaaaacaatgataaggtcatgcataattactgta
ccatgcatattgtaataattatgcatggctatatcattgtttttctgctg
gactacgtaattattcaacatggtggcctctttaaaaaaggtctattgat
ttGGCGTTCAATTCATTTGATTGACACAGTTCCAAAATTTTATATAATTT
ACACTTAAGTTAACTCTGTTCCTTAAGTTTTTTTCCTTATTCTCAGCCtg
ggcagttccttaacaattcctttttttaaacaaaaaatcaggagtTTCAA
AGGACCCTCCCGGCACTCCGGAAACTTCTGGAGTTTTCCggagcagctaa
aaaaacactatttttcccTCCAGAAAGTTCTGGAACTCTTCCTGTGCTTC
tggagcaagtgatttttaacacaTTTTAAAACCGTTTAAAAACGTAGTTA
cagtcagttaggaacatttggcgagttcctgtgcgcggccgcaatcaaaa
aatttataacaacactcattaaaaaatgatgtttgtgtcttttcgcactt
tttttagcctagacaatGTACCGTGAAGttgagggaaacttgcatagtca
tcaaatgactgaccaatcaaagcagcaaaatttcgaaacaaatgaactac
tacgcagctccgctcacagctctcctctaccatttttgttttgatttaac
tttttatatattttaatgaccagccaggtcattcattttagggctatgca
tgttagcctccactgatgcaagttacccgacttcacggtagcaaacatag
taagtataagaacattgtgcttttaattggttgaaatctttttttgcatc
ggaaaaactttttcaaactttttagcAATAATTGACCAAACTGACCAAAT
TCAtaatcaatagaaatttttctcttttattttgattttgtgcCCTAGTC
TTTACTTGTAATTATTATATGACAATTGCCGTATCTAATAATTGCAATGC
TTTCGATATAAAATTTATCCATACGCTTTTGTAGTGATGTTTGTAAAGCC
CTTGCCACAACTGCCACGCTGGCTGcaagaaatttggaaaaagcgatatt
atacctgttatcttttttctttaaagaatcaacaagccatcaacatcaat
aaattacatatatttcctcagaaactttcaaaattatctcccattatgac
tttcttgtaGCCGTTcagaaattaaccaatcgggttgtGTATCAGAATTC
CAATGGGAGTTCTtatccgagatttgtaaaatagctaagtcagcaaaaaa
actttttccgagggtttgaggaaaaaacagaactgctatcatttgctttt
tatttaaccatGTATTTAAATTTGcactcaaaaatacttaaataaataag
ttaataaaaTACGGGGGATtcggaccattctatcgtgtgCGCAAAATAGg
acggaaactaagtagcaccctcagtgcaagattgccgcctcatctttatt
cgcccgcgcgagaacGCGAGTTAATCATTTTTCTCCTgcactcaagggga
aaaggaaagtgatcgatattctttgaaggaaaaacgtcagaaacaaacct
aAAGTTCAAAAGATTTCTGCTATGCATTTTTTttggaacgctgaaaaact
ctaatttcgatcttccgtaaggtaaagaggttgcgagatttgggttagcg
aggcaaaaatcgctaaaaagctggtaaaatcgtaatcctcaaaaatcgaa
gttccagcNcgatgaatcgacgatcgaacgcaatcgaacgcaatcgaaca
tcaatcgaacgcaatcgaatatcaatcgaatctgacaATTGCAGTAATAT
Tctattgagattcgattgcgtttgacaatcgaattccaatcggtcgattg
cgtcgatttggttcgactggtacgatcgtcaattccgttcgattgaaaTC
GTCTGGATATAGTAGGAGGAAATTTGCCAGTCTGGAAAGGAGGGAAATGT
TACGCGGGAGTTGCGCCAGCTTAACTGGGAATAATTGAAGGCAGCAGATC
TCAAACCTCAAATCTACGCCGGAGATATCCGGCACATGAGCCGCAATTTC
CAGActgggaaatttgttcgttttttgaggtcgcttgatttttttagtca
aagcacttgttatacatttttggaaagctaaggggttaatcgaaattacg
atgtttccaaatttttttcggacactttggtgtgattttcggacaataat
tacggtctcaggcaaaaatcatagggtcaaaaattaatgaagattttagc
ttgagaaaacggagacctgttggaaagctctcaaaaaattaagattagag
atatattgcgagtataggtgatgtCAGTACATAACTCAAGATATTGGAGC
TTCAAatagcgcaaaaactggacaaaacagctgtttctggctgaaaaaac
actgtttttaagggttaatatATCGAGTTAGGTATAGAAATCAcctactt
gcaatatatctctaatcttaattttttgagagctttccaaaaatataaaa
caggtctccgttttctcaagctaaaattttcattatataATTTTgtccct
atgatttttgcctgagaccgtcatatttgtccgaaaatcacaccaaagtg
tccgaaaaaaaattggaaacattgaaATTCGGACTCCTCTATANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNcgtaaggtaaagaggttgcgagatttgggttagc
gaggcaaaaatcgctaaaaagctggtaaaatcgtaatcctcaaaaatcga
agttccagcttCACTGTTAGTGTCTCGCTGTGATCATTATATTATATGGA
TGCCACaactgccacgcttgccacaagAGAATCAACCACACCATAGTGTC
TTGCTGTGATCGTTACATTAATATGATTGCCACAGCACAGTTGCCAAATT
CAAGGGTGAGCAATAGCTGTGAAATCTATTCAATGATTAACACAGCTGCC
ATGCTTGCCCCGAGGAATTTAGCTGTACCATAGTGTCTCGCTGTGATCGT
TATATTATATGAttgccacgcttgccacaagAAAATGAACTATCATAGTG
TCTCGGCTGTGGTCGTTATATTATATGAATGCCACAACTGCCACGATGGC
TGCAAGAAAATCAACCATACCATAGTGTCTTGCTGTGGTTGTTGTATTAT
ATGAATGCCACaactgccacgcttgccacaagAAAATCAACCATACCATA
GTGTCTTGCTGTGATCGTTACAttatatgattgccacagctgccatgTGA
TAAAGAGCGGCAGTCTCAGAAACACTATATATCGCGACTTAGCCCATTAT
AGCTCCCAACTTAtttaacatttcaaaaaaaaatttataagaacatccaa
aatttctgaagcctttttttagttttaagccaaaaaatgttcttaacatg
ttcttattttcaccattttttcagaatttttgtccattttcctaagaaat
tgggtattttaatgtccccaaagccttaaaatgttcttaacttgttctta
tcctttggccatcgaagccttatgttcttatatagtttgttcttataaaa
aagaatgtGTATTAAGGCTGAAATGGTTGATTTTTGGGGTTTTATTAGCA
AAAGCATTTAGGGCTTGAATTAGAAAgctttgaaattatgaaatgttatt
tcattttttatacgtttaggttttgtttttaaataagggagatattgttt
gcttactcatcaattttaattcacaagctttttcacattggattggcacg
gatgtggagcaagattggtcagaaagaggacaagaaaaacattttttgtt
taaatcagcataatataacaataggcagacactgtcccgaAATGCAATAT
GTATCTGACACGAAACAGGAactcttatgtaaaaataaaaccttcaaaga
aatataataatcttttaaagaaaaaaaattacacttcAAAGCCATACAGA
GGGAAACGGCCCTAAACATATACTTAGTAATGAAAAAGGAATATTGATAT
AAGAAATTCAGCAGGTGCATTCCATACCTACGatatatataattttcaat
cgactaaaagtcttaaaatgttcttctttttcttagtctccttatttttc
ttattcagAGCTCTTCATACAAACAAAGAAGGAATTGTccattgtttttt
cttttggtcaAGTTTTTACATGGTTTTGTGAAAATGtaatttgagaatat
tttaaggaTCAGGAAATAGTAACAAGCTTAGAAATAAAGTCAGGTTTCAG
TTTCAGCTTTATTATCAGCAATTTTGTTTAAGAAAGGGGTCcttttcctt
ttatttcatgttttcaattgctttatgatatatttttagttatcttgttt
taaaaaataatgttttacttATATTAAAAATTCggttttcttttttagta
aATTTTAAGCCATATAACTTTTTGAAGATTAAGAATATAAATACATAGGA
TTGAGTAAGATAAGACctgttatttttccttttttttttctcttcaaaaa
aaCTTACGAATAAATCTTCATCAAGATGTTTGTTCTTCGTTTTAAGttta
tatatgtgaagaaataggAATTTCTCTTCAACTNAACTAAAAAAAtcaag
cgattttacaaatttcccccgaCTTatagtaccgtgagattgggtaactt
gcatcagtggaggctaacatgcatagccctcaaatgaaccagacctgatc
aatcgaacttgtcgaaccaatcaaacaatcgaactaatcaaactcgatcg
aacgattaaagttcgattaaaaaaattaatcgaacctagTTCGAACACTC
Actatttttgaagcaatagcagttcgattagttcggtcagtaaaaacttc
gattagttcgatgatattaaatcctcatatcttccctcgcttgcaaaaac
tttatccTTGCACACGATTtgattgccatttcgacagttcccggacttaa
taGCTTTTAACGTTTATTGTACATTGTACCTGGATATTTGTCTGtccgga
ataaagtccgtagcccctctgttgaGATTTCGCGCGCGGCCGAGTGACGG
AACACTACACACCAACAAACTGCCTCTGacgctaaaaggatacaggaaaa
gtgtgtagtccgttatcggaagtaatttcccgatttacattctgaatttg
gctttgaaaagaagttaatatacggtggcggagcagaacaaacttgtcaa
acaaaattggtttagcgaactgatcgaaccgaaactcattgatcgaactt
aatcaaacactcacaatcattaaaaaaatcttagagttcgattaaaaatt
ttttaatcgaactttaatcgttttatggagttcgattagttcaattGTTT
GATTAGTTcaattgttcgattggttcgacaagtttgattgatcgggtctg
gaattaaagacctggctggtcattaaaatacaaagttacatcaaaacaaa
aatggtagagtaaagatgcgagcggagctgcgtaattgtattttaatgac
cagccaggtcattcatttgNgattttttttgttaatttcctTTGAATGAG
TTTTGACAGGTTAAAGGtgtgaatttgatgttttcacGTTGCCGTTGCAG
TTGTGACTTCGGAAACTCTCTAATAAAACGTCAGAGATGAAatcatcttt
ttttttcaatcagtgattcagaCCTTCCTTTTAATCTTATcttaaaaagg
gtgtcggaattacaTGAGGGCTGTCAACAtcagaccaacttacggtactt
aTTCTTTTGGGACGAGAATGATGGAggttttacaagctcttatttgattt
ggttggtcgttaaccagtaataaaacaattttgttacttttttctaaaga
acgcttcatttttattacttcaaatgaccaattattaattatcttataaa
aacttaaCCTTTTCTGATTCTGTTTTTTAaaatgccaaaatttcttttga
atattttttcagaTCTGTCAACAAATATGGGTATCAAAGAGACATTATCC
GATATCAATGCTGACCATCCTTTACACAAAGCCAAAGCTTTTTACTTCTT
ATTCGATGCAGCAATCAAAACACTACCTCGACACCTGGGAATGTATTACA
AACACACCTTACTACTCTCACCTCACCAAGTTGCCATGTTGTTATCTGTT
AGACCTTTCCTATTAATATTTGGTTCACCTGTCCTTGGTGGTATAGCTGA
TAAAACCAATAAATTTCGACATGTGATGTTGATCTCGTTATTGACATTCC
TGGTTACTTACGTTCTAGTCCCATTGGTTGAACCGGTGGAAGGTTTTAAT
TGCAAAGAACACGTACACTTCAATCATTCGGCCAATCACATCAATATTTC
AACGCCAGTTTTTCATAAACTTCATAAACAAATTGTGAGCAATGGTAAGA
TTAtgctttttgattgtttttgtcATACATTTTCAACATTCTTTTCGCAT
TTCTGGCTGGGCACCTGTTTTTCATCCTCTTTCCGaaataatttttaatc
ttttatataatattttaaaaaacaGCCTAGTAATAAAATCGTTATATTGA
ATCtacatttatcaaaaaaaatctaaaacaacaattttttgaatttctct
ggagttaatttttttaaacttttagttCAAAGGCAGtatgatttttttcg
aaaagaacTAGTTGTAGCTCTATCTTAGGTACAGTgggtctccataactc
gaacaggAACAAGGGagacacaaatttgttcgagttaaggaaattttgag
ttatgaagtagggtttataaggcatttttaaCTGAAAGAGCCATAAAact
tattcgagttaaggagacattcgatttgtagatgttcgagttaaagacAC
TCCACTGTATAATAGTACTATATTAAGACCCAAtaaaaatagaacgaaaa
tgaATTTACTGGTataattttttcataatttttcttcCTTCTGTTTCTCT
CGTTAGGTGCCAGAGTAAAGGTGGAAGTTCACAAGTACTACCAAATGGTC
AACGAAGAAGGCACCAATAATCACCAATATGACGGGAACTTGATGCAGGA
CTTGTACTACACGTGGCCGTTCGACATGTATGAGTACGAACTTACGGATG
ATATAACACAGAAAGTATTCAACGTCATTCTCTTAATCACAATTTTTGGA
GAATTCTTCGCATCACCGTCAGAAACGTTTGCCGATCTATATACGCTACG
TGCTTTAGGCTCTAACCATAACCGCTATGGTTGGCAAATAATATCTGGTT
TATTTGGTTTCTTCATTGTTTCAATCGCTTTTGCAGCGTCATCAGACATA
CGCTTACAGTTGAAAGATGATTTCTGTCATGTTGGTCACGTGATCAATTA
CAGCCCTTATTTATTCGTAGTATACGGCCTTGTTGGCGCATGTATCCTGA
TTGCCGCTACATTCCAATACCGCCTTTTTCCGAAACCTACCGCCCCACGT
AAAGATGACGGGTGTAATTGCGATTGTAATTTCATCAAGGCGTTACCAGT
ACTAGCAGAAACCCCCGCTTACACTGCATACGCTATTGCTGTTATATTTT
GTGGATTTGCCTGTGGTGTAAAACAGCTTTATATCTACCATTATCTTACA
GAGCTGGGTGGTCCTCATCAGCTCATATTTGTAGTTTTGAGTGTCCACTT
TATATCAGGTTTCTTGGCACTCTTAGCGTCACCCTACCTACTTGAGCGTT
TTGGAGCATCAAATCTTATAGCAGGTGGTTTGCTTTTGAATGGAATCTCA
TTTGTTGTATATTCACTCATCAAAAATCCATGGTTGATCTTAATTGTTGA
ACCTTTCCATGGGCTCTGTCAAGAATTATCTTGGGTCGCTATTGTCACTT
ACGCTGGTGCGCCGCCACAAATTGGGGCGGCTCTACAGGGTACGGTACAT
GGTTTACATAAAGGTCTTGGACTAGCTTTAGGCTATTATGCAGTATGTGT
TTTAATCTTGAAATTTGGTTACGTCGGTTTCTTTTTAGCTACtggtttgt
tattttttgttgtgtttggattttatttatttgtcaTTCGAATGTATCCG
AAAGAGGAAAGCATCGCGGACAGTTATAGTTGTTATTCCAAGATTCATCA
ACAGGACGTGGACAGTGACGGCGAAGAGACGGTTGAAATGTTTCAGAAAG
GTGATTATAATAACGAAACATTGGATAGATCTTTCTTAGAAtgattttgg
tttgatttagcGAGGTTGAGCATGAGGATATACAATATGCTTTTTTATAC
AACCTAATAGGTCTCAGTACTAAtttgataaatataattttcttgTAATT
CGACATTAGCAAT Coding sequence (CDS) from alignment at scaffold_277:255178..276640+ >TCONS_00056574 ID=TCONS_00056574|Name=TCONS_00056574|organism=Clytia hemisphaerica|type=CDS|length=5103bp|location=Sequence derived from alignment at scaffold_277:255178..276640+ (Clytia hemisphaerica) aTGAGGGCTGTCAACAtcagaccaacttacgaTCTGTCAACAAATATGGG TATCAAAGAGACATTATCCGATATCAATGCTGACCATCCTTTACACAAAG CCAAAGCTTTTTACTTCTTATTCGATGCAGCAATCAAAACACTACCTCGA CACCTGGGAATGTATTACAAACACACCTTACTACTCTCACCTCACCAAGT TGCCATGTTGTTATCTGTTAGACCTTTCCTATTAATATTTGGTTCACCTG TCCTTGGTGGTATAGCTGATAAAACCAATAAATTTCGACATGTGATGTTG ATCTCGTTATTGACATTCCTGGTTACTTACGTTCTAGTCCCATTGGTTGA ACCGGTGGAAGGTTTTAATTGCAAAGAACACGTACACTTCAATCATTCGG CCAATCACATCAATATTTCAACGCCAGTTTTTCATAAACTTCATAAACAA ATTGTGAGCAATGGTGCCAGAGTAAAGGTGGAAGTTCACAAGTACTACCA AATGGTCAACGAAGAAGGCACCAATAATCACCAATATGACGGGAACTTGA TGCAGGACTTGTACTACACGTGGCCGTTCGACATGTATGAGTACGAACTT ACGGATGATATAACACAGAAAGTATTCAACGTCATTCTCTTAATCACAAT TTTTGGAGAATTCTTCGCATCACCGTCAGAAACGTTTGCCGATCTATATA CGCTACGTGCTTTAGGCTCTAACCATAACCGCTATGGTTGGCAAATAATA TCTGGTTTATTTGGTTTCTTCATTGTTTCAATCGCTTTTGCAGCGTCATC AGACATACGCTTACAGTTGAAAGATGATTTCTGTCATGTTGGTCACGTGA TCAATTACAGCCCTTATTTATTCGTAGTATACGGCCTTGTTGGCGCATGT ATCCTGATTGCCGCTACATTCCAATACCGCCTTTTTCCGAAACCTACCGC CCCACGTAAAGATGACGGGTGTAATTGCGATTGTAATTTCATCAAGGCGT TACCAGTACTAGCAGAAACCCCCGCTTACACTGCATACGCTATTGCTGTT ATATTTTGTGGATTTGCCTGTGGTGTAAAACAGCTTTATATCTACCATTA TCTTACAGAGCTGGGTGGTCCTCATCAGCTCATATTTGTAGTTTTGAGTG TCCACTTTATATCAGGTTTCTTGGCACTCTTAGCGTCACCCTACCTACTT GAGCGTTTTGGAGCATCAAATCTTATAGCAGGTGGTTTGCTTTTGAATGG AATCTCATTTGTTGTATATTCACTCATCAAAAATCCATGGTTGATCTTAA TTGTTGAACCTTTCCATGGGCTCTGTCAAGAATTATCTTGGGTCGCTATT GTCACTTACGCTGGTGCGCCGCCACAAATTGGGGCGGCTCTACAGGGTAC GGTACATGGTTTACATAAAGGTCTTGGACTAGCTTTAGGCTATTATGCAG TATGTGTTTTAATCTTGAAATTTGGTTACGTCGGTTTCTTTTTAGCTACt ggtttgttattttttgttgtgtttggattttatttatttgtcaTTCGAAT GTATCCGAAAGAGGAAAGCATCGCGGACAGTTATAGTTGTTATTCCAAGA TTCATCAACAGGACGTGGACAGTGACGGCGAAGAGACGGTTGAAATGTTT CAGAAAGGTGATTATAATAACGAAACATTGGATAGATCTTTCTTAGAAtg aaTGAGGGCTGTCAACAtcagaccaacttacgaTCTGTCAACAAATATGG GTATCAAAGAGACATTATCCGATATCAATGCTGACCATCCTTTACACAAA GCCAAAGCTTTTTACTTCTTATTCGATGCAGCAATCAAAACACTACCTCG ACACCTGGGAATGTATTACAAACACACCTTACTACTCTCACCTCACCAAG TTGCCATGTTGTTATCTGTTAGACCTTTCCTATTAATATTTGGTTCACCT GTCCTTGGTGGTATAGCTGATAAAACCAATAAATTTCGACATGTGATGTT GATCTCGTTATTGACATTCCTGGTTACTTACGTTCTAGTCCCATTGGTTG AACCGGTGGAAGGTTTTAATTGCAAAGAACACGTACACTTCAATCATTCG GCCAATCACATCAATATTTCAACGCCAGTTTTTCATAAACTTCATAAACA AATTGTGAGCAATGGTGCCAGAGTAAAGGTGGAAGTTCACAAGTACTACC AAATGGTCAACGAAGAAGGCACCAATAATCACCAATATGACGGGAACTTG ATGCAGGACTTGTACTACACGTGGCCGTTCGACATGTATGAGTACGAACT TACGGATGATATAACACAGAAAGTATTCAACGTCATTCTCTTAATCACAA TTTTTGGAGAATTCTTCGCATCACCGTCAGAAACGTTTGCCGATCTATAT ACGCTACGTGCTTTAGGCTCTAACCATAACCGCTATGGTTGGCAAATAAT ATCTGGTTTATTTGGTTTCTTCATTGTTTCAATCGCTTTTGCAGCGTCAT CAGACATACGCTTACAGTTGAAAGATGATTTCTGTCATGTTGGTCACGTG ATCAATTACAGCCCTTATTTATTCGTAGTATACGGCCTTGTTGGCGCATG TATCCTGATTGCCGCTACATTCCAATACCGCCTTTTTCCGAAACCTACCG CCCCACGTAAAGATGACGGGTGTAATTGCGATTGTAATTTCATCAAGGCG TTACCAGTACTAGCAGAAACCCCCGCTTACACTGCATACGCTATTGCTGT TATATTTTGTGGATTTGCCTGTGGTGTAAAACAGCTTTATATCTACCATT ATCTTACAGAGCTGGGTGGTCCTCATCAGCTCATATTTGTAGTTTTGAGT GTCCACTTTATATCAGGTTTCTTGGCACTCTTAGCGTCACCCTACCTACT TGAGCGTTTTGGAGCATCAAATCTTATAGCAGGTGGTTTGCTTTTGAATG GAATCTCATTTGTTGTATATTCACTCATCAAAAATCCATGGTTGATCTTA ATTGTTGAACCTTTCCATGGGCTCTGTCAAGAATTATCTTGGGTCGCTAT TGTCACTTACGCTGGTGCGCCGCCACAAATTGGGGCGGCTCTACAGGGTA CGGTACATGGTTTACATAAAGGTCTTGGACTAGCTTTAGGCTATTATGCA GTATGTGTTTTAATCTTGAAATTTGGTTACGTCGGTTTCTTTTTAGCTAC tggtttgttattttttgttgtgtttggattttatttatttgtcaTTCGAA TGTATCCGAAAGAGGAAAGCATCGCGGACAGTTATAGTTGTTATTCCAAG ATTCATCAACAGGACGTGGACAGTGACGGCGAAGAGACGGTTGAAATGTT TCAGAAAGGTGATTATAATAACGAAACATTGGATAGATCTTTCTTAGAAt gaaTGAGGGCTGTCAACAtcagaccaacttacgaTCTGTCAACAAATATG GGTATCAAAGAGACATTATCCGATATCAATGCTGACCATCCTTTACACAA AGCCAAAGCTTTTTACTTCTTATTCGATGCAGCAATCAAAACACTACCTC GACACCTGGGAATGTATTACAAACACACCTTACTACTCTCACCTCACCAA GTTGCCATGTTGTTATCTGTTAGACCTTTCCTATTAATATTTGGTTCACC TGTCCTTGGTGGTATAGCTGATAAAACCAATAAATTTCGACATGTGATGT TGATCTCGTTATTGACATTCCTGGTTACTTACGTTCTAGTCCCATTGGTT GAACCGGTGGAAGGTTTTAATTGCAAAGAACACGTACACTTCAATCATTC GGCCAATCACATCAATATTTCAACGCCAGTTTTTCATAAACTTCATAAAC AAATTGTGAGCAATGGTGCCAGAGTAAAGGTGGAAGTTCACAAGTACTAC CAAATGGTCAACGAAGAAGGCACCAATAATCACCAATATGACGGGAACTT GATGCAGGACTTGTACTACACGTGGCCGTTCGACATGTATGAGTACGAAC TTACGGATGATATAACACAGAAAGTATTCAACGTCATTCTCTTAATCACA ATTTTTGGAGAATTCTTCGCATCACCGTCAGAAACGTTTGCCGATCTATA TACGCTACGTGCTTTAGGCTCTAACCATAACCGCTATGGTTGGCAAATAA TATCTGGTTTATTTGGTTTCTTCATTGTTTCAATCGCTTTTGCAGCGTCA TCAGACATACGCTTACAGTTGAAAGATGATTTCTGTCATGTTGGTCACGT GATCAATTACAGCCCTTATTTATTCGTAGTATACGGCCTTGTTGGCGCAT GTATCCTGATTGCCGCTACATTCCAATACCGCCTTTTTCCGAAACCTACC GCCCCACGTAAAGATGACGGGTGTAATTGCGATTGTAATTTCATCAAGGC GTTACCAGTACTAGCAGAAACCCCCGCTTACACTGCATACGCTATTGCTG TTATATTTTGTGGATTTGCCTGTGGTGTAAAACAGCTTTATATCTACCAT TATCTTACAGAGCTGGGTGGTCCTCATCAGCTCATATTTGTAGTTTTGAG TGTCCACTTTATATCAGGTTTCTTGGCACTCTTAGCGTCACCCTACCTAC TTGAGCGTTTTGGAGCATCAAATCTTATAGCAGGTGGTTTGCTTTTGAAT GGAATCTCATTTGTTGTATATTCACTCATCAAAAATCCATGGTTGATCTT AATTGTTGAACCTTTCCATGGGCTCTGTCAAGAATTATCTTGGGTCGCTA TTGTCACTTACGCTGGTGCGCCGCCACAAATTGGGGCGGCTCTACAGGGT ACGGTACATGGTTTACATAAAGGTCTTGGACTAGCTTTAGGCTATTATGC AGTATGTGTTTTAATCTTGAAATTTGGTTACGTCGGTTTCTTTTTAGCTA CtggtttgttattttttgttgtgtttggattttatttatttgtcaTTCGA ATGTATCCGAAAGAGGAAAGCATCGCGGACAGTTATAGTTGTTATTCCAA GATTCATCAACAGGACGTGGACAGTGACGGCGAAGAGACGGTTGAAATGT TTCAGAAAGGTGATTATAATAACGAAACATTGGATAGATCTTTCTTAGAA tga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056574-exon-scaffold_277-1491911889:255178..255642 | TCONS_00056574-exon-scaffold_277-1491911889:255178..255642 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1510915933:255178..255642 | TCONS_00056574-exon-scaffold_277-1510915933:255178..255642 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1575043694:255178..255642 | TCONS_00056574-exon-scaffold_277-1575043694:255178..255642 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1491911889:274027..274071 | TCONS_00056574-exon-scaffold_277-1491911889:274027..274071 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1510915933:274027..274071 | TCONS_00056574-exon-scaffold_277-1510915933:274027..274071 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1575043694:274027..274071 | TCONS_00056574-exon-scaffold_277-1575043694:274027..274071 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1491911889:274290..274721 | TCONS_00056574-exon-scaffold_277-1491911889:274290..274721 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1510915933:274290..274721 | TCONS_00056574-exon-scaffold_277-1510915933:274290..274721 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1575043694:274290..274721 | TCONS_00056574-exon-scaffold_277-1575043694:274290..274721 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1491911889:275284..276640 | TCONS_00056574-exon-scaffold_277-1491911889:275284..276640 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1510915933:275284..276640 | TCONS_00056574-exon-scaffold_277-1510915933:275284..276640 | Clytia hemisphaerica | exon |
TCONS_00056574-exon-scaffold_277-1575043694:275284..276640 | TCONS_00056574-exon-scaffold_277-1575043694:275284..276640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_277 | supercontig | scaffold_277:255178..276640 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056574 vs. Swiss-Prot (Human)
Match: MFSD6 (Major facilitator superfamily domain-containing protein 6 OS=Homo sapiens GN=MFSD6 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.870e-21 Identity = 128/520 (24.62%), Postives = 212/520 (40.77%), Query Frame = 3
Query: 552 INADHPLHKAKAFYFLFDAAIKTLPRHLGMYYKHTLLLSPHQVAMLLSVRPFLLIFGSPVLGGIADKTNKFRHVMLISLLTFLVTYVLVPLVEPVEGFNC----KEHVHFNHSANHINI-----STPVFHKLHKQIVS--NGARVKVEVHKYYQM-----VNEEGTNNHQYD--GNLMQDL--------------------------YYTWPFDMYEYELTDDITQKVFNVILLITIFGEFFASPSETFADLYTLRALGSNHNRYGWQIISGLFGFFIVSIAFAASSD---IRLQLKDDFCHVGHVINYSPYLFVVYGLVGACILIAAT---FQYRLFPKPTAPRKDDGCNCDCNFIK-----ALPVLAETPAYTAYAIA---------------------VIFCGFACGVKQLYIYHYLTELGGPHQLIFVVLSVHFISGFLALLASPYLLERFXXXXXXXXXXXXXXXXFVVYSLIKNPWLILIVEPFHGLCQELSWVAIVTY--AGAPPQIGAALQG 1877
IN D L +K FYF F +A +L L +YYK L +SP Q +L+ +R F+ +P G +AD+ K + V+L SLL +++ + + V+P C + H ++++ + I S F + ++ N ++ V + +N E T Q N M DL + P D + +F VIL++ I GEFF++ S T D TL+ LG + +RYG Q + G G+ + ++ D I + + C NY +F+V+G++ LI AT F+Y F + DD + + + ETP T+++ A F GF G ++Y +L +L G L V + +S A S L+E G ++ GL N ++ S ++N W +L +E G+ W A ++Y A PP++ + QG
Sbjct: 64 INND--LLISKVFYFFFYSAYGSLYPLLPVYYKQ-LGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLLCWVLFNLGIGFVKPAT-LRCVPKIRPTTHPTNASHQLTILPTNSSFTSFLTISPKMREKRNLLETRLNVSDTVTLPTAPNMNSEPTLQPQTGEITNRMMDLTLNSSTATPVSPGSVTKETTTVIVTTTKSLPSDQVMLVYDQQEVEAIFLVILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIEVLIDGKGCKPPEYRNYQ-IVFIVFGVLMTMALIVATQFRFRYNHF------KNDDSKGKEVEIPQVERNNSTESSEETPTTTSHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQG 572
The following BLAST results are available for this feature:
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