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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056573 ID=TCONS_00056573|Name=TCONS_00056573|organism=Clytia hemisphaerica|type=transcript|length=3352bpRun BLAST on NCBI protein sequence of TCONS_00056573-protein >TCONS_00056573-protein ID=TCONS_00056573-protein|Name=TCONS_00056573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp LTGSRRTNLRGNQPSNFFCYCAVFRKKAAFHSQQINWSIDSFKMSNPELERun BLAST on NCBI transcript from alignment at scaffold_277:215494..253606+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056573 ID=TCONS_00056573|Name=TCONS_00056573|organism=Clytia hemisphaerica|type=transcript|length=38113bp|location=Sequence derived from alignment at scaffold_277:215494..253606+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_277:215494..253606+ >TCONS_00056573 ID=TCONS_00056573|Name=TCONS_00056573|organism=Clytia hemisphaerica|type=CDS|length=35640bp|location=Sequence derived from alignment at scaffold_277:215494..253606+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056573 vs. Swiss-Prot (Human)
Match: DPOA2 (DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2) HSP 1 Score: 414.075 bits (1063), Expect = 1.587e-130 Identity = 244/589 (41.43%), Postives = 347/589 (58.91%), Query Frame = 1
Query: 151 EELSTEFGDIGIDIEGNLPVLEKLTGLCKTFKLTAEDITAQWMTFALKATECTVITEETLDDFEKKQLLK--GKKTSNVKKSSAQTPHRKSYTGNNISSLFDEEDTMLGSYATTPESKQSIKRSHITPEQPSNKRFASIDATPISQRFXXXXXXXXXXXXXXXKYEARSGKGDVLASFG--QGVDNSTQIQWNGQGIQPHIRLYVDSEEDSLKKPYKHMFQKLQDKADVLNEIINNLAEDMKSSLMLDESESVAQTTEEKAIFSGRVCCDSVGRLNAKSVVLEGSRETSAGQRIPLDLSEVKNYSLFPGQIISVQGTNKTGATINASGIYKGIRLPFFSAKRKNQTVNEDPFTVQIACGPFSTCDETLSYKPLDDLLSTVTKAVPDVLILLGPFVDSKQPLIEKGEVDDLFEDIFAGCMEKIQRAVHNLSTQVVLVPSQRDVFHEYVYPQPPLIDPLGGSTDPKKIHMMSDPCTLMINDVCFGLTSTDILFHLGAEEAAAHATRSDRLGRLADHLLLQQSYYPLHPTHEDVNLDYEAFERHAYMPITPDVLVVPSDLRYFVKDVEGCLCMNPGRLVKGQTGGTFIKCLM 1905
++L+ E G+D E L +EKL LC + E + + + F +T +T E L+ FE + L K K + K S R + + + +EE+ +L SY TTP SK S KR+ TPE P KR S S + S +TPS KY +RS +G+V+ SFG QGV W+G+G +I L V ++L YK MFQKL D +VL I L ++K ++ + +E G++ CDS G+LN KSV+LEG RE S+G +IP+DLSE+K YSLFPGQ++ ++G N TG + A+ +Y+G+ LPF+ ++ + V +ACGP++T D +++Y PL DL++ + PDV IL GPF+D+K +E + FEDIF C+ I + + +V VPS RDV HE VYPQPP D K++ +S+PC+L IN V FGLTSTD+LFHLGAEE ++ + SDR R+ H+L Q+SYYPL+P ED+ +DYE+F +A +P+TPDVL++PS+LRYFVKDV GC+C+NPGRL KGQ GGTF + +
Sbjct: 6 QQLAEELQIFGLDCEEAL--IEKLVELCVQYGQNEEGMVGELIAFC-TSTHKVGLTSEILNSFEHEFLSKRLSKARHSTCKDSGHAGARDIVSIQELIEVEEEEEILLNSY-TTP-SKGSQKRAISTPETPLTKRSVSTR----SPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGVS------WSGRGGAGNISLKVLGCPEALTGSYKSMFQKLPDIREVLTCKIEELGSELKEHYKIEAFTPLLAPAQEPVTLLGQIGCDSNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKLYEGVPLPFYQPTEEDADFEQS--MVLVACGPYTTSD-SITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSPFEDIFKQCLRTIIEGTRSSGSHLVFVPSLRDVHHEPVYPQPPFSYSDLSREDKKQVQFVSEPCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDMAIDYESFYVYAQLPVTPDVLIIPSELRYFVKDVLGCVCVNPGRLTKGQVGGTFARLYL 576 The following BLAST results are available for this feature:
BLAST of TCONS_00056573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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