TCONS_00056552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056552
Unique NameTCONS_00056552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056552 ID=TCONS_00056552|Name=TCONS_00056552|organism=Clytia hemisphaerica|type=transcript|length=709bp
aaaaaaacatgtaactttTGTTAGAATTCTAATCAGATAgtggttttgtg
ctcgttgaaaagatattcaaaagtaAGGACTTTAATTGGTCTGATTGGTT
TTTATATCTATTGGTTAATATTCCTCTCCTTAATACCCTTTCAACGAACA
CGAAACCGCTAAATCCGAATTCTATAAAAAGTTAAAGCCTTTTTTTGCTA
TTCCGTTGCgtattattttgagacagattaTGACTTATCCAAGATTCTGC
AAGACTATTTGACAACATtctaaaaactaatttttcagCATTCGGTGCTT
TGGAAATTCATCGAGGCTTGCCAATAATGTATGATTGTGACCTttaaata
gaaaaacttttgaaCCCTCTGTCATGTCATATCATGAAATTATTATAGAC
ATATCATTAGCAATTAACCAAGTGAGTTTGACCGACGAAGGAAtacttaa
agtctcatttgggaattggataagtgcgTTTTGATAAGAAAAATATACTC
CCACCATACTCTTGTCAACAGTATAAAAGTTTCTTGATAGCATAACACTA
TTacattttgattcatttttgaACTAAAGCTACTGAATAGTTTTTTCGAC
TTGTTTATATACTTAGTAAAAAGAtaacttgtttttaaaaatgttttgaa
atatgtGGAACTGCTTTTTTTAAAgtgaaaagtgaaaatacatttgcatt
ttgttttta
Run BLAST on NCBI

transcript from alignment at scaffold_276:506741..507449

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056552 ID=TCONS_00056552|Name=TCONS_00056552|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_276:506741..507449 (Clytia hemisphaerica)
taaaaacaaaatgcaaatgtattttcacttttcacTTTAAAAAAAGCAGT
TCCacatatttcaaaacatttttaaaaacaagttaTCTTTTTACTAAGTA
TATAAACAAGTCGAAAAAACTATTCAGTAGCTTTAGTtcaaaaatgaatc
aaaatgtAATAGTGTTATGCTATCAAGAAACTTTTATACTGTTGACAAGA
GTATGGTGGGAGTATATTTTTCTTATCAAAAcgcacttatccaattccca
aatgagactttaagtaTTCCTTCGTCGGTCAAACTCACTTGGTTAATTGC
TAATGATATGTCTATAATAATTTCATGATATGACATGACAGAGGGttcaa
aagtttttctatttaaAGGTCACAATCATACATTATTGGCAAGCCTCGAT
GAATTTCCAAAGCACCGAATGctgaaaaattagtttttagaATGTTGTCA
AATAGTCTTGCAGAATCTTGGATAAGTCAtaatctgtctcaaaataatac
GCAACGGAATAGCAAAAAAAGGCTTTAACTTTTTATAGAATTCGGATTTA
GCGGTTTCGTGTTCGTTGAAAGGGTATTAAGGAGAGGAATATTAACCAAT
AGATATAAAAACCAATCAGACCAATTAAAGTCCTtacttttgaatatctt
ttcaacgagcacaaaaccacTATCTGATTAGAATTCTAACAaaagttaca
tgttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035632XLOC_035632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056552-exon-scaffold_276-1491911889:506741..507449TCONS_00056552-exon-scaffold_276-1491911889:506741..507449Clytia hemisphaericaexon
TCONS_00056552-exon-scaffold_276-1510915933:506741..507449TCONS_00056552-exon-scaffold_276-1510915933:506741..507449Clytia hemisphaericaexon
TCONS_00056552-exon-scaffold_276-1575043694:506741..507449TCONS_00056552-exon-scaffold_276-1575043694:506741..507449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:506741..507449 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20624	2.21417	1.44611	2.75099	4.40162	1.73911	4.19633	4.35557	1.37523	1.48126	0.28755	0.897863	0.896615	1.76427	1.3296	0.99448	0.479394	0.982727	1.50855	0.94715	5.07668	5.42093	3.25425	2.95858	0.685636	1.76775	2.72423	3.84189	1.89012	1.60478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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