TCONS_00056522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056522
Unique NameTCONS_00056522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056522 ID=TCONS_00056522|Name=TCONS_00056522|organism=Clytia hemisphaerica|type=transcript|length=3595bp
GTTCGGATTTGATGAATTGACGAATGTATTGCCAACTTGGTTCGAACCAG
GCATTTCCAGTGATTGACTACCGTACATCTGTTGTGCGTCCATCAAACGA
GAATCCAAATTCTGATCGAAAGAAGCATCATCTGATCTAGCGTTGGCAGG
TTGCTGCGTCATAGCAGAATCTTGTGAAAATACATCACCGTTTGATGAAG
AAAAAGACTGGGCCGAATCACCATTGTTATATGGGTCTTGCTGGAAGCCG
TAATTTGGTTCTTGTGGGCCACCGTAACTTGGTTCTTGTGTGCCACCGTA
ATATGCATTTTGTTGGTATTGATTTATTGTTGTATCTTTTTGATTGTTAG
ATTTTGAACTTTGATCCTGACTCGATATTTGGTTTGTTGTACTCGTCTTC
GTTTTATCTTGGCTTGGTGAATTTGTTTTGTCTTGTGACTTTTCACTGCT
TTTGAACGCGTTTTTACCGTCAGCCGTCGTCCCACCGTTTGTATTACTTG
TGCTTTGACTGTTAGAAGCTTTTGTATTTTCTTCGTTCCCACTCCAATTT
TGTTGTTTGGTAGATTCTTTCGTTTTTTGTTGATCATTTGAACTTTTAGC
CGCTTCTTTAGTCTTTTGTACATCCGGATTTTGTTGATTGAATTTCTGAC
CTTGATCTTTACTGCCTTTGTTTGAGCTGTTGTTTTGTTGTCCGCTCATG
CCATTACTGTGTCCACCATTAATACTATTACCAGGCTCTGCATTTTCGct
gttttcaaaattgattttttgatcaTTATTTTGGCTCGAGCCAGCAGCCT
GCTTCCCGTGGTAATTGAAATTTTCGTCGTGGCTTGAGCCACCATTTTGG
TTATTAGAAGGTGCCTTATTTTTGTTGCCATGGTAACTAGCACTTTGCTG
TTGACCATCACTACTTGAGTTTCTTCCACCTTGGTTTTCGATGTCTTTAA
ATTTCGAATTCTGAGAGTTATTCGAGTTGTCAGTATTTTTGCTCTCAGAT
GTACCAGCAGATTGACTAGCCTGTGAATTCTGCTTTAGTTGATTATCATT
AGACGGTTGACTACCTTTGAAATTCGCTTCTTGTTTGTTGCTTTGTTTTG
CTTGGTTACTGCTACCACCACTGGACTGAGAATTGGACGATTGttgattt
ttattgtttttgaaatcCTTGTTCTTATGACTGCTTGGTTTTATCTGAGC
TTGATCAGGTTTCCCTTGATTGCTACTAGAATCGGACTGAGATGCTTGAT
CGTTACTTTTGTTGAAGTTCTggttattgattggtttctcTTTGTTGTTG
TTCCCAGTATTGGGTTGAATATTGAATGTTTGACcattatttgttttgaa
attggaaTTCTGGTTGCTGTTCTCTTTATTCTTGTTGTTTTGATCAGGTC
TTTTCCCAGCGTTACTTTCCTTAAAACCTTCATTGTTTTTCAATTGTCCT
TGGTTATTTTTGTTCCCCTGACCAGTTTGTGGGTTTGTTTGTTGAGCGTT
ATTTTCGTTGGCATTGGATTTCTGATTCTCATTAGATCCAGCAGCATTAT
TATTAGCTTGAGGATTTTGAGAAGTGCTTCCTGAGGATTCATTGTTGCTG
TGACCTTTGTTATTGTAATTAGACTCACTTGATTGATTTCCAttgctttc
tttgttttgtttcccGTTGTCTTGGAAATTCTGTTTCTCCTGCTTTCGGC
CATTTTGGTTCGAGTTATTGTCACTTGAGAAAGAACCACTCTCTGAGCTA
TCTTGGTTATTTTCGTGATAATTTCCTTTCTGTTGTGAATCCCCATCAGT
ATTTTGACCCTCATCCTCTTTATCGTTAATTTCATTACCGTGAAATTTtc
cattcttttgttttcggcCCCGGTTCTTTTTACCACGATGTTTACCTTTC
TTGTGTTTCAACTTGTTGATGTAAGTATCAATACCAAGATTCTCATTCTC
TGATTGTTCTTCATCTTCGTTTCTTTGATTCTCGGTACCGTCAAATTTGC
CATGTCCTTTATGACCTTTACGCTTCTTTTTCCGTTCCGCCATCTTCGAT
TGTTGATCATCATTCGAATCATTTGACTCGTCATTTCTATCGTTCTCAGC
TTCTCTACCATCTTGATCATTTTGATCATCGGTACCGTGAGGATTTCCac
tttcttcttcgttttcctCTATGTCGTTATTTTCATTATTGTTATCAAAG
CTTTGTTTTTGCCCTTTTCTGTGTTTCGCATTTccatgaaattttccttt
tcttttattttgtggTTCCTCATTCTCATCATCATCACTATCATCATTAT
TCGCATAATTCTGTTTTCGGCTTCCGTGGATTTTTCCATGTCCGCGTCTc
tttttatgtttgtttttaCGATTCTCTTGGCTCGATTCATTTTCGGTACC
GTTAGATTCTCCAGATTTATTGTTATTCGAATCATTCGAATCGTCAGAAC
TTTGCTGGCCATCCTCATCATGAAATTGTTCTTGGTTTTCTTTACTTTCG
TTGTCCGTATTTTGTAAAAACCGATGATGTTTGTTCCGATGTTTGTTATG
TTCTTTGACCTTTTTATCAGAGTCAGGTTTGTTTGCATTTTCACCCTCGG
TATGATGAAATTTTCTATGCTTCTTGTTCTTATTTGAACCGAATCCGTTT
TTGTTTCCCGATTTCGATTTATCGGGTTTCTCCTCAGCACTGTTGGAATC
GTCGTTCTGAAAACTAGATTCGTCACTTTGagaatttcccgatttcccaT
TATCGTCCGATTTTTGATTGTCCGAATCCGATTCTAATCCGTTTTGGAAC
TTATCATCTGATTCTCCCTGATCGGATTGGTCGGGACTGGAACTggaatt
ttctttttggtttttctcTGCATTCTTCTCctgtttcatttcattttcaa
tttcattttgtttcgtTTTCAAAAGTTTGGTTAAATTCTCATCATCCAAG
CCGGCTTTCTCGTTCTCGCTTTCAAACTGATTCTCCTTTTCGTTGTTCTC
AGCattcttttcatctttcaattCCTTGTTCTCCTCCTTCTCCTCCGCGT
CCTTTTGGTCTTGACTCGTTTCTTTgtcattatgaaatttttcactttta
ccaTCTTTAGAAGGACTACTGTTAACAATTTCCTGTTGACTCGCCTCTTT
GCCATTactaaacttttcatttttgccAGCTTTAGAAGGACCACTATCAC
CTTTCTGATTTTCATTTCCAGGACTCACTTCATTGCCATaactaaatttt
tcatttttgccagCTTCAGAAGGACCACTGTTACCAGTCTCTTGTTGAGG
ATCTGCattgaaaagtttgtttttctccTCATCAGTCGAGAGCGGAGTCA
CCGTAACTGTGTGACCATTGGAGTGAAACATTTTCGCATTTTGAAGAGCC
TCTTTCTCATGTTGAGGTAGATTCTCCTGTCTCACCATCTCATCAGTGTA
CGCACGATGTTTCTCGTTAAAATGTTGCATTTTCCGGTCCTGATTATTAC
TTTTCATTACATCTTGAATATCTCGGTCCTCAATTTGTTCAGCAAAACCA
CTCAGTGAACTatctttatcatttttatgaaCCAAAGCAAAAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_276:777434..781102-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056522 ID=TCONS_00056522|Name=TCONS_00056522|organism=Clytia hemisphaerica|type=transcript|length=3669bp|location=Sequence derived from alignment at scaffold_276:777434..781102- (Clytia hemisphaerica)
GTTCGGATTTGATGAATTGACGAATGTATTGCCAACTTGGTTCGAACCAG
GCATTTCCAGTGATTGACTACCGTACATCTGTTGTGCGTCCATCAAACGA
GAATCCAAATTCTGATCGAAAGAAGCATCATCTGATCTAGCGTTGGCAGG
TTGCTGCGTCATAGCAGAATCTTGTGAAAATACATCACCGTTTGATGAAG
AAAAAGACTGGGCCGAATCACCATTGTTATATGGGTCTTGCTGGAAGCCG
TAATTTGGTTCTTGTGGGCCACCGTAACTTGGTTCTTGTGTGCCACCGTA
ATATGCATTTTGTTGGTATTGATTTATTGTTGTATCTTTTTGATTGTTAG
ATTTTGAACTTTGATCCTGACTCGATATTTGGTTTGTTGTACTCGTCTTC
GTTTTATCTTGGCTTGGTGAATTTGTTTTGTCTTGTGACTTTTCACTGCT
TTTGAACGCGTTTTTACCGTCAGCCGTCGTCCCACCGTTTGTATTACTTG
TGCTTTGACTGTTAGAAGCTTTTGTATTTTCTTCGTTCCCACTCCAATTT
TGTTGTTTGGTAGATTCTTTCGTTTTTTGTTGATCATTTGAACTTTTAGC
CGCTTCTTTAGTCTTTTGTACATCCGGATTTTGTTGATTGAATTTCTGAC
CTTGATCTTTACTGCCTTTGTTTGAGCTGTTGTTTTGTTGTCCGCTCATG
CCATTACTGTGTCCACCATTAATACTATTACCAGGCTCTGCATTTTCGCT
GTTTTCAAAATTGATTTTTTGATCATTATTTTGGCTCGAGCCAGCAGCCT
GCTTCCCGTGGTAATTGAAATTTTCGTCGTGGCTTGAGCCACCATTTTGG
TTATTAGAAGGTGCCTTATTTTTGTTGCCATGGTAACTAGCACTTTGCTG
TTGACCATCACTACTTGAGTTTCTTCCACCTTGGTTTTCGATGTCTTTAA
ATTTCGAATTCTGAGAGTTATTCGAGTTGTCAGTATTTTTGCTCTCAGAT
GTACCAGCAGATTGACTAGCCTGTGAATTCTGCTTTAGTTGATTATCATT
AGACGGTTGACTACCTTTGAAATTCGCTTCTTGTTTGTTGCTTTGTTTTG
CTTGGTTACTGCTACCACCACTGGACTGAGAATTGGACGATTGTTGATTT
TTATTGTTTTTGAAATCCTTGTTCTTATGACTGCTTGGTTTTATCTGAGC
TTGATCAGGTTTCCCTTGATTGCTACTAGAATCGGACTGAGATGCTTGAT
CGTTACTTTTGTTGAAGTTCTGGTTATTGATTGGTTTCTCTTTGTTGTTG
TTCCCAGTATTGGGTTGAATATTGAATGTTTGACCATTATTTGTTTTGAA
ATTGGAATTCTGGTTGCTGTTCTCTTTATTCTTGTTGTTTTGATCAGGTC
TTTCCCCAGCGTTACTTTCCCTAAAACCTTCATTGTTTTTCGATTGTCCT
TGGTTATTTTTGTTTNATCAGGTCTTTTCCCAGCGTTACTTTCCTTAAAA
CCTTCATTGTTTTTCAATTGTCCTTGGTTATTTTTGTTCCCCTGACCAGT
TTGTGGGTTTGTTTGTTGAGCGTTATTTTCGTTGGCATTGGATTTCTGAT
TCTCATTAGATCCAGCAGCATTATTATTAGCTTGAGGATTTTGAGAAGTG
CTTCCTGAGGATTCATTGTTGCTGTGACCTTTGTTATTGTAATTAGACTC
ACTTGATTGATTTCCATTGCTTTCTTTGTTTTGTTTCCCGTTGTCTTGGA
AATTCTGTTTCTCCTGCTTTCGGCCATTTTGGTTCGAGTTATTGTCACTT
GAGAAAGAACCACTCTCTGAGCTATCTTGGTTATTTTCGTGATAATTTCC
TTTCTGTTGTGAATCCCCATCAGTATTTTGACCCTCATCCTCTTTATCGT
TAATTTCATTACCGTGAAATTTTCCATTCTTTTGTTTTCGGCCCCGGTTC
TTTTTACCACGATGTTTACCTTTCTTGTGTTTCAACTTGTTGATGTAAGT
ATCAATACCAAGATTCTCATTCTCTGATTGTTCTTCATCTTCGTTTCTTT
GATTCTCGGTACCGTCAAATTTGCCATGTCCTTTATGACCTTTACGCTTC
TTTTTCCGTTCCGCCATCTTCGATTGTTGATCATCATTCGAATCATTTGA
CTCGTCATTTCTATCGTTCTCAGCTTCTCTACCATCTTGATCATTTTGAT
CATCGGTACCGTGAGGATTTCCACTTTCTTCTTCGTTTTCCTCTATGTCG
TTATTTTCATTATTGTTATCAAAGCTTTGTTTTTGCCCTTTTCTGTGTTT
CGCATTTCCATGAAATTTTCCTTTTCTTTTATTTTGTGGTTCCTCATTCT
CATCATCATCACTATCATCATTATTCGCATAATTCTGTTTTCGGCTTCCG
TGGATTTTTCCATGTCCGCGTCTCTTTTTATGTTTGTTTTTACGATTCTC
TTGGCTCGATTCATTTTCGGTACCGTTAGATTCTCCAGATTTATTGTTAT
TCGAATCATTCGAATCGTCAGAACTTTGCTGGCCATCCTCATCATGAAAT
TGTTCTTGGTTTTCTTTACTTTCGTTGTCCGTATTTTGTAAAAACCGATG
ATGTTTGTTCCGATGTTTGTTATGTTCTTTGACCTTTTTATCAGAGTCAG
GTTTGTTTGCATTTTCACCCTCGGTATGATGAAATTTTCTATGCTTCTTG
TTCTTATTTGAACCGAATCCGTTTTTGTTTCCCGATTTCGATTTATCGGG
TTTCTCCTCAGCACTGTTGGAATCGTCGTTCTGAAAACTAGATTCGTCAC
TTTGAGAATTTCCCGATTTCCCATTATCGTCCGATTTTTGATTGTCCGAA
TCCGATTCTAATCCGTTTTGGAACTTATCATCTGATTCTCCCTGATCGGA
TTGGTCGGGACTGGAACTGGAATTTTCTTTTTGGTTTTTCTCTGCATTCT
TCTCCTGTTTCATTTCATTTTCAATTTCATTTTGTTTCGTTTTCAAAAGT
TTGGTTAAATTCTCATCATCCAAGCCGGCTTTCTCGTTCTCGCTTTCAAA
CTGATTCTCCTTTTCGTTGTTCTCAGCATTCTTTTCATCTTTCAATTCCT
TGTTCTCCTCCTTCTCCTCCGCGTCCTTTTGGTCTTGACTCGTTTCTTTG
TCATTATGAAATTTTTCACTTTTACCATCTTTAGAAGGACTACTGTTAAC
AATTTCCTGTTGACTCGCCTCTTTGCCATTACTAAACTTTTCATTTTTGC
CAGCTTTAGAAGGACCACTATCACCTTTCTGATTTTCATTTCCAGGACTC
ACTTCATTGCCATAACTAAATTTTTCATTTTTGCCAGCTTCAGAAGGACC
ACTGTTACCAGTCTCTTGTTGAGGATCTGCATTGAAAAGTTTGTTTTTCT
CCTCATCAGTCGAGAGCGGAGTCACCGTAACTGTGTGACCATTGGAGTGA
AACATTTTCGCATTTTGAAGAGCCTCTTTCTCATGTTGAGGTAGATTCTC
CTGTCTCACCATCTCATCAGTGTACGCACGATGTTTCTCGTTAAAATGTT
GCATTTTCCGGTCCTGATTATTACTTTTCATTACATCTTGAATATCTCGG
TCCTCAATTTGTTCAGCAAAACCACTCAGTGAACTATCTTTATCATTTTT
ATGAACCAAAGCAAAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035602XLOC_035602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056522-exon-scaffold_276-1575043694:779706..781102TCONS_00056522-exon-scaffold_276-1575043694:779706..781102Clytia hemisphaericaexon
TCONS_00056522-exon-scaffold_276-1575043694:777434..779631TCONS_00056522-exon-scaffold_276-1575043694:777434..779631Clytia hemisphaericaexon
TCONS_00056522-exon-scaffold_276-1510915933:779706..781102TCONS_00056522-exon-scaffold_276-1510915933:779706..781102Clytia hemisphaericaexon
TCONS_00056522-exon-scaffold_276-1510915933:777434..779631TCONS_00056522-exon-scaffold_276-1510915933:777434..779631Clytia hemisphaericaexon
TCONS_00056522-exon-scaffold_276-1491911889:779706..781102TCONS_00056522-exon-scaffold_276-1491911889:779706..781102Clytia hemisphaericaexon
TCONS_00056522-exon-scaffold_276-1491911889:777434..779631TCONS_00056522-exon-scaffold_276-1491911889:777434..779631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:777434..781102 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0142689	0	0.166888	0.0736575	0.0919363	0.182338	0	0	0.0996498	0.10345	0.0227029	0.0195645	0	0.0882697	0.0317422	0.106552	0	0.0451927	0.2133	0.104295	0.0653388	0.130115	1.20378	1.01113	0.0201933	0.0459989	0.00510221	0.00480486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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