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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056503 ID=TCONS_00056503|Name=TCONS_00056503|organism=Clytia hemisphaerica|type=transcript|length=422bp
ATATGTTCGTATGGCGTTACCAAGGTGTTGGTATGGCGTTACCAATATTT
TCGTATGGCGTTACCAAAGTGTTGGTATGGCGTTACCAAAGTGTTGGTAT
GGCGTTACCAAAGTGTCGCTATGGCGTTACCAATATGTTCGTATGGCGTT
ACCAAAGTGTTGCTATGGCGTTACCAAAGTATTGGTATGGCGTTACCAAG
GTGTCGGTATGGCGTTACGAAAGTGTTGGTATGGCGTTACCAAGGTGTCG
GTATAATGCAACAAAATTGGCATCGATATAAAGTTTCCAAGGACCTGGGA
TGGTGTATCAAGATTCTGATGTTAGCAAGCCCATGAAGTATCCATCTTGA
TGGATACCCAGTAGTATGTTCATACCAGTACCGggaaggatcaaggatca
aatgaagataaggatcaaggat Run BLAST on NCBI protein sequence of TCONS_00056503-protein >TCONS_00056503-protein ID=TCONS_00056503-protein|Name=TCONS_00056503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
ICSYGVTKVLVWRYQYFRMALPKCWYGVTKVLVWRYQSVAMALPICSYGV
TKVLLWRYQSIGMALPRCRYGVTKVLVWRYQGVGIMQQNWHRYKVSKDLG
WCIKILMLASP Run BLAST on NCBI transcript from alignment at scaffold_276:427800..429647- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056503 ID=TCONS_00056503|Name=TCONS_00056503|organism=Clytia hemisphaerica|type=transcript|length=1848bp|location=Sequence derived from alignment at scaffold_276:427800..429647- (Clytia hemisphaerica)
ATATGTTCGTATGGCGTTACCAAGGTGTTGGTATGGCGTTACCAATATTT
TCGTATGGCGTTACCAAAGTGTTGGTATGGCGTTACCAAAGTGTTGGTAT
GGCGTTACCAAAGTGTTGGTATGGCGTTACCAAAGTGTTGGTATGGCGTT
ACCAATATGTTCGTCTGGCGTTACCAAAGTGTTGGTATGGCGTTACCAAA
GTGTTGGTATGGCGATACCAAGGTGTCGCTATGGCGTTACCAATATGTTC
GTATGGCGTTACCAAAGTGTTGCTATGGCGTTACCAAAGTATTGGTATGG
CGTTACCAAGGTGTCGGTATGGCGTTACGAAAGTGTTGGTATGGCGTTAC
CAAGGTGTCGGTATAATGCAACAAAATTGGCATCGATATAAAGTTTCCAA
GGACCTGGGATGGTGTATCAAGATTCTGATGTTAGCAAGCCCATGAAGTA
TCCATCTTGATGGTAAGATTCATTTCTCAGAATATTGATTCTAAAAATGT
TTTTGAAACCCAAGCTATATATACAACTGATACAAATACATTCACTCAGA
GCAGCATATGCATTTTGTCCTTATTGGGACTCGTCAGCACTGCGTATTGC
AGCCTGACTGGCCAAGTCGATTTAGCCAGCATCTCTAAACCACAAAAATC
ACTTTGTGGCTCAAACAATATATATTCTCAATTTGCATCAAAATTCTTAT
CCCTGTAAACAGTGCATTTAGTAATAAGCAAAAAGCTCGTCCCAAAAAAG
TTCTGAAAAATGGCAAAAAATGAAGTTTTCAGAAAGTCGAAAATTTTTAT
ATAGACATAAAGGATATCATTTCATGAATAATTTGTGAAAAAATCAGAGC
AGGAACATGCTCCATTGAAAAGTTATGGCCAAATTTCCGATTTCTGGGCT
AAAATCCCTGGACAGTTAACAAGAATCAAGATTTTTACAAAATGGGCATA
TAAAGACTACAAAGTAGTTTACCTTACCAAATGTTTTTAAATATTGATAA
TTTGGATGTTACTGAAGAGTTTAAGTCATTTCAGTTGTCCAATGAAGTTT
TTTGGGGGTCTAAAATTTCGTTGCGCCGTGACGGAAAATCACAATTAAAA
AAAAATTGAACAAAGCAGATTTTTTTCAGTTTTTAAATGTTTGATGATAT
TTAGCTATCAAACTTTAATTTTAGACTTAGTCATACCTTAGAAATAGTCA
AGGGAAAAATATTAACAGATTTTTTTTCAAAAATGTTTCATTCCATTGTT
TTCCAAAAATGTCCATTTTTTTAAAACAGTGCTAATTTTTCCGTAAATAC
ATGCCTTAGGAAAGATTTAATAACAATTTTGATTACAACATGTTGAAATA
AGATCAGAAAATATATTATTCATATTTGTGATTTTCACTGTTTCATCAAA
TTTTAGGCCGAAATGGACCATTTATTGACCTTTCAAGAACCAATATCTTT
CCAGCACATTCACAAAACCCCGTGATGTTATATATCATTGAAAGCAAAAT
TTTAAATAGATTCTGAATATCTAATTTTCAAAAATGAAAATTTTGTTGGG
TGAGAGCTATAGTGCTTTAAGTAGTTTTTTCATAGCTTATTGCTATTTGG
CATGTCTGCAAAAATAATTTAATAATACACACCCCTAGCGCTAAGGCTGC
AAATGTAATTCTCAAGGATCGTGTACAGATGAATTGTCTGAGGGAGTATA
GTCGTCCTGGAGACTAGATGTAACGCCCAGTCACGAAACTCTTATTGTGT
TTTCTTAGTTCATTTCCATCTTTTTTAGGATACCCAGTAGTATGTTCATA
CCAGTACCGGGAAGGATCAAGGATCAAATGAAGATAAGGATCAAGGAT Coding sequence (CDS) from alignment at scaffold_276:427800..429647- >TCONS_00056503 ID=TCONS_00056503|Name=TCONS_00056503|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_276:427800..429647- (Clytia hemisphaerica)
GTGTCGCTATGGCGTTACCAATATGTTCGTATGGCGTTACCAAAGTGTTG
CTATGGCGTTACCAAAGTATTGGTATGGCGTTACCAAGGTGTCGGTATGG
CGTTACGAAAGTGTTGGTATGGCGTTACCAAGGTGTCGGTATAATGCAAC
AAAATTGGCATCGATATAAAGTTTCCAAGGACCTGGGATGGTGTATCAAG
ATTCTGATGTTAGCAAGCCCATGAATATGTTCGTATGGCGTTACCAAGGT
GTTGGTATGGCGTTACCAATATTTTCGTATGGCGTTACCAAAGTGTTGGT
ATGGCGTTACCAAAGTGTTGGTATGGCGTTACCAAAGTGTCGCTATGGCG
TTACCAATATGTTCGTATGGCGTTACCAAAGTGTTGCTATGGCGTTACCA
AAGTATTGGTATGGCGTTACCAAGGTGTCGGTATGGCGTTACGAAAGTGT
TGGTATGGCGTTACCAAGGTGTCGGTATAATGCAACAAAATTGGCATCGA
TATAAAGTTTCCAAGGACCTGGGATGGTGTATCAAGATTCTGATGTTAGC
AAGCCCATGAATATGTTCGTATGGCGTTACCAAGGTGTTGGTATGGCGTT
ACCAATATTTTCGTATGGCGTTACCAAAGTGTTGGTATGGCGTTACCAAA
GTGTTGGTATGGCGTTACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056503-exon-scaffold_276-1575043694:429536..429647 | TCONS_00056503-exon-scaffold_276-1575043694:429536..429647 | Clytia hemisphaerica | exon |
| TCONS_00056503-exon-scaffold_276-1575043694:429186..429425 | TCONS_00056503-exon-scaffold_276-1575043694:429186..429425 | Clytia hemisphaerica | exon |
| TCONS_00056503-exon-scaffold_276-1575043694:427800..427869 | TCONS_00056503-exon-scaffold_276-1575043694:427800..427869 | Clytia hemisphaerica | exon |
| TCONS_00056503-exon-scaffold_276-1510915933:429536..429647 | TCONS_00056503-exon-scaffold_276-1510915933:429536..429647 | Clytia hemisphaerica | exon |
| TCONS_00056503-exon-scaffold_276-1510915933:429186..429425 | TCONS_00056503-exon-scaffold_276-1510915933:429186..429425 | Clytia hemisphaerica | exon |
| TCONS_00056503-exon-scaffold_276-1510915933:427800..427869 | TCONS_00056503-exon-scaffold_276-1510915933:427800..427869 | Clytia hemisphaerica | exon |
| TCONS_00056503-exon-scaffold_276-1491911889:429536..429647 | TCONS_00056503-exon-scaffold_276-1491911889:429536..429647 | Clytia hemisphaerica | exon |
| TCONS_00056503-exon-scaffold_276-1491911889:429186..429425 | TCONS_00056503-exon-scaffold_276-1491911889:429186..429425 | Clytia hemisphaerica | exon |
| TCONS_00056503-exon-scaffold_276-1491911889:427800..427869 | TCONS_00056503-exon-scaffold_276-1491911889:427800..427869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:427800..429647 - |
Blast
The following BLAST results are available for this feature:
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