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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056430 ID=TCONS_00056430|Name=TCONS_00056430|organism=Clytia hemisphaerica|type=transcript|length=515bp
TTGATACGTCTGTTTATAATAATGGTAGCTGTTATCCAGATTACATCAGC
TGAAATTATTCTCGAGATATTATTTGAGGACTATTCAAATCCTAACAATT
GGTTGGCAACTCACGAATGCTGTTACGATAAGCTATCAACTTGCAGGGTG
TCGTGTGACAATACATTATCAATGTGTGTATCAAGTGACCTCAATAAAGG
ATCTTGCGGTCTTGGATCTGTTACAATCAACCCTAAATATACCTTCAGAG
ACGATGAGAAAAGATTTTTACAAGGCAAAGACGAATATAGGTTTCAAAAT
CCGTTCAACCACAAACTTGGAAAAGGAATTAAGGAGGACAAGCTGTCCCT
TGATTTTAGGGTAGTACACAGTGGCACAGAAAATGTCGCAGATTTCAAAG
ATATTGAAGTCAAAGTCGATACTGGTTCACCATCCAACAGTTGGCAAGTC
CTGGGAACTGTTAAGACGGTAGAAGGAAGAAGATGGAAAAGATCTGCTAA
AAAATTGACCCTGAA Run BLAST on NCBI protein sequence of TCONS_00056430-protein >TCONS_00056430-protein ID=TCONS_00056430-protein|Name=TCONS_00056430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
LIRLFIIMVAVIQITSAEIILEILFEDYSNPNNWLATHECCYDKLSTCRV
SCDNTLSMCVSSDLNKGSCGLGSVTINPKYTFRDDEKRFLQGKDEYRFQN
PFNHKLGKGIKEDKLSLDFRVVHSGTENVADFKDIEVKVDTGSPSNSWQV
LGTVKTVEGRRWKRSAKKLTL Run BLAST on NCBI transcript from alignment at scaffold_276:401426..402854+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056430 ID=TCONS_00056430|Name=TCONS_00056430|organism=Clytia hemisphaerica|type=transcript|length=1429bp|location=Sequence derived from alignment at scaffold_276:401426..402854+ (Clytia hemisphaerica)
TTGATACGTCTGTTTATAATAATGGTAGCTGTTATCCAGGTAAGAGCTTC
GAGGCGTATACTGCCGTgatctgacaaaaggaagtaaccatcaatttttg
aaaattcatatttttgcaaaaatcaactCCTAAGAGTCCAGTTTGTGTTT
TCCAGTAGTCGATTTCTAGTAAAAGACTtctttttatcgattttttttgg
actaaagtttcattttattttctgacaaaaggaTTACTTCCACTTACTTC
TACTTCGTCACTTACTTCTTTTTAtagcctgaaaaatgaaaattgcttgc
aatattttgcagtttattttctgacaaaaagaagtaactttaaaattttt
agcctGAAAGAGCTTGAGTAGAGTAAGActatgttcagacgttacggttc
cgttccgttctGAAACGAAACGGTTGTTttgaaacaagtgtgaacgtcaa
aattggaaacgtcaaaaaaaaaagacgttccaaagcaaaacagatcgaaa
cggtttcgctccactttctaatatatataataatatttaatAATATTTCA
AGTAATCTTTTTCTAGATTACATCAGCTGAAATTATTCTCGAGATATTAT
TTGAGGACTATTCAAATCCTAACAATTGGTTGGCAACTCACGAATGCTGT
TACGATAAGCTATCAACTTGCAGGGTGTCGTGTGACAATACATTATCAAT
GTGTGTATCAAGTGACCTCAATAAAGGATCTTGCGGTCTTGGATCTGTTA
CAATCAACCCTAAATATACCTTCAGAGACGATGAGAAAAGATTTTTACAA
GGCAAAGACGAATATAGGTTTCAAAATCCGTTCAACCACAAACTTGGAAA
AGGAATTAAGGAGGTAACTGCTGATAAATGTGTTTCTCTTAAAGGATGTA
CTGCAGCGACTATAGTGCAATAGTAGAGCATCAAGCTACGGTGCACATGA
TCTTGGCTTCAATCCCCGGCAAGGTCACACCTCTCTGTTTGATTCTTAGC
AATTAAGAAAAGAAACAAGGGTAAGTGAAGCAATCTAGGGAAAAGGAGTG
GCACCATCCGCTTCCTCCATGTAGATAGTTTTAAAAAGAGGAGCCTACAG
ACCTTCTAATTTACTTTCTAAAAGAGAACACTAGAGGTATTCATTCCCTA
AAGTATGAAAAAGTCCACCAAAAAAAACCGTATAATCAACTACAAGTGTT
CTTTTTTTATGCAGAATACTTTTTAAATTCACTTCAATCTATTTTTATAG
GACAAGCTGTCCCTTGATTTTAGGGTAGTACACAGTGGCACAGAAAATGT
CGCAGATTTCAAAGATATTGAAGTCAAAGTCGATACTGGTTCACCATCCA
ACAGTTGGCAAGTCCTGGGAACTGTTAAGACGGTAGAAGGAAGAAGATGG
AAAAGATCTGCTAAAAAATTGACCCTGAA Coding sequence (CDS) from alignment at scaffold_276:401426..402854+ >TCONS_00056430 ID=TCONS_00056430|Name=TCONS_00056430|organism=Clytia hemisphaerica|type=CDS|length=1539bp|location=Sequence derived from alignment at scaffold_276:401426..402854+ (Clytia hemisphaerica)
TTGATACGTCTGTTTATAATAATGGTAGCTGTTATCCAGATTACATCAGC
TGAAATTATTCTCGAGATATTATTTGAGGACTATTCAAATCCTAACAATT
GGTTGGCAACTCACGAATGCTGTTACGATAAGCTATCAACTTGCAGGGTG
TCGTGTGACAATACATTATCAATGTGTGTATCAAGTGACCTCAATAAAGG
ATCTTGCGGTCTTGGATCTGTTACAATCAACCCTAAATATACCTTCAGAG
ACGATGAGAAAAGATTTTTACAAGGCAAAGACGAATATAGGTTTCAAAAT
CCGTTCAACCACAAACTTGGAAAAGGAATTAAGGAGGACAAGCTGTCCCT
TGATTTTAGGGTAGTACACAGTGGCACAGAAAATGTCGCAGATTTCAAAG
ATATTGAAGTCAAAGTCGATACTGGTTCACCATCCAACAGTTGGCAAGTC
CTGGGAACTGTTAAGACGGTAGAAGGAAGAAGATGGAAAAGATCTGCTAA
AAAATTGACCCTGTTGATACGTCTGTTTATAATAATGGTAGCTGTTATCC
AGATTACATCAGCTGAAATTATTCTCGAGATATTATTTGAGGACTATTCA
AATCCTAACAATTGGTTGGCAACTCACGAATGCTGTTACGATAAGCTATC
AACTTGCAGGGTGTCGTGTGACAATACATTATCAATGTGTGTATCAAGTG
ACCTCAATAAAGGATCTTGCGGTCTTGGATCTGTTACAATCAACCCTAAA
TATACCTTCAGAGACGATGAGAAAAGATTTTTACAAGGCAAAGACGAATA
TAGGTTTCAAAATCCGTTCAACCACAAACTTGGAAAAGGAATTAAGGAGG
ACAAGCTGTCCCTTGATTTTAGGGTAGTACACAGTGGCACAGAAAATGTC
GCAGATTTCAAAGATATTGAAGTCAAAGTCGATACTGGTTCACCATCCAA
CAGTTGGCAAGTCCTGGGAACTGTTAAGACGGTAGAAGGAAGAAGATGGA
AAAGATCTGCTAAAAAATTGACCCTGTTGATACGTCTGTTTATAATAATG
GTAGCTGTTATCCAGATTACATCAGCTGAAATTATTCTCGAGATATTATT
TGAGGACTATTCAAATCCTAACAATTGGTTGGCAACTCACGAATGCTGTT
ACGATAAGCTATCAACTTGCAGGGTGTCGTGTGACAATACATTATCAATG
TGTGTATCAAGTGACCTCAATAAAGGATCTTGCGGTCTTGGATCTGTTAC
AATCAACCCTAAATATACCTTCAGAGACGATGAGAAAAGATTTTTACAAG
GCAAAGACGAATATAGGTTTCAAAATCCGTTCAACCACAAACTTGGAAAA
GGAATTAAGGAGGACAAGCTGTCCCTTGATTTTAGGGTAGTACACAGTGG
CACAGAAAATGTCGCAGATTTCAAAGATATTGAAGTCAAAGTCGATACTG
GTTCACCATCCAACAGTTGGCAAGTCCTGGGAACTGTTAAGACGGTAGAA
GGAAGAAGATGGAAAAGATCTGCTAAAAAATTGACCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056430-exon-scaffold_276-1491911889:401426..401464 | TCONS_00056430-exon-scaffold_276-1491911889:401426..401464 | Clytia hemisphaerica | exon |
| TCONS_00056430-exon-scaffold_276-1510915933:401426..401464 | TCONS_00056430-exon-scaffold_276-1510915933:401426..401464 | Clytia hemisphaerica | exon |
| TCONS_00056430-exon-scaffold_276-1575043694:401426..401464 | TCONS_00056430-exon-scaffold_276-1575043694:401426..401464 | Clytia hemisphaerica | exon |
| TCONS_00056430-exon-scaffold_276-1491911889:401992..402288 | TCONS_00056430-exon-scaffold_276-1491911889:401992..402288 | Clytia hemisphaerica | exon |
| TCONS_00056430-exon-scaffold_276-1510915933:401992..402288 | TCONS_00056430-exon-scaffold_276-1510915933:401992..402288 | Clytia hemisphaerica | exon |
| TCONS_00056430-exon-scaffold_276-1575043694:401992..402288 | TCONS_00056430-exon-scaffold_276-1575043694:401992..402288 | Clytia hemisphaerica | exon |
| TCONS_00056430-exon-scaffold_276-1491911889:402676..402854 | TCONS_00056430-exon-scaffold_276-1491911889:402676..402854 | Clytia hemisphaerica | exon |
| TCONS_00056430-exon-scaffold_276-1510915933:402676..402854 | TCONS_00056430-exon-scaffold_276-1510915933:402676..402854 | Clytia hemisphaerica | exon |
| TCONS_00056430-exon-scaffold_276-1575043694:402676..402854 | TCONS_00056430-exon-scaffold_276-1575043694:402676..402854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:401426..402854 + |
Blast
The following BLAST results are available for this feature:
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