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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056426 ID=TCONS_00056426|Name=TCONS_00056426|organism=Clytia hemisphaerica|type=transcript|length=3157bp
GCCTACCTGATATCGAAGAAGAAGATAGAAGATTAGAATTTAGATTTAAA
TTAGATTTTATTTCGCAAAAAAAATGCTTAGGATTTATGAATAAGTTTCT
TATACTAAATAGCGTATCAAAAATTGCTTATCTTGAGCAAAAACATTGGT
TACAATGTAGAATAATAACATAGGTTCATATTACAAAACAAGGTCAATAG
AGTATATGAAAACAGAATTCAAAATAGCAGTAGAGCTCGTATAGGATGTT
GAAACGTGGGACGATAGTGTGAGGAGTACTAAGCTCTCTAAGAAAATGAA
AGTCAAATTGCAAAGAAAATTACTTCTTTTCACGATTCTATGCGTTCACA
TAACATCTACGTTTGCCGTTCCGCAGAACCGAATCCCTGATGCCGACCGG
GATTACGTTAACATAGATACGGAATGCGGCCCGGTAGAGGGTAAGAGGTT
TACGGAAAACGTTAAGTGGCATAACGATTCTGTAAACGTTTACGAGTTCC
GTAATATACCTTACGCAAAACCACCCGTAGGAAAACTCAGATGGCGCCCT
CCAGTTCGTTTAAGTGACGATCCCGCCCAATGTTGGGATGGTGTTTTGAA
ATACAACAAAAACGTAGTAGCGTGTAAGCAAGACCATCCTTTTACACCGT
CCGTTAATACTAGCGAAGACTGCCTGGTATTGACCGTACGTACCCCTAAT
CTGGATCCTAGCTCTAAATTGCCAGTAATTGTATGGATACACGGAGGAGG
AATGCTATGGGGATATAACGAAATGTTCGCTTTTCATCCGGACACGGAGT
TTTCCGCTTATATGGAGGCAGTAACCGTATCAATAAACTACCGGTTGAAC
GTATTCGGATTTATGTCTTTGAAAGAGTTATGGATTGAAAATGGACCAAA
CAAATCTTATGGAAATTATGGTATTCTGGACCAGATTGAGACACTAAAAT
GGGTTAAAAGTAACATCAAACAATTTGGTGGAGACTCTGAGAACGTTATG
ATTTATGGTGAATCAGGTGGCGGTACTGGTGTTTACTGTTTATTATGCTC
ACCCCTGGCAAACGGACTATTTCAGAAGGCAAGCCCGCAATCCGGAGCAC
CGAACATACGGACAACTCATGAAGTAGCTGATATGAAGTATCGTAGTATT
ATTGACAAAGCTGATTGTCAAAAAGAGAGTCCAGACAATATTGTTGAATG
TTTGCAGAACATAGATGCTGATGACTTTCTATCGCTCTTCAAAGGAACTT
CCGTTACACCTTATCATTGGAAAATGCCAACTAATGAACCATATAATGGC
TACCCTGTTGAGATTCTGGATCCGGTTGTAGTGACAAAATCACCAGACCA
AATTCCAGTCCACCAGAATACTCAAGTGGAGCTCTTGATCGGGAACTGTG
CACAAGAAACCGGTCCGTTTCCTCACAAACCGAAACCAGATGCCAACATC
ACAACGTGGGCAGACCTACAAGCTGCACTAGAGCCTCAGATGGATACTTT
TAAGAAAGGACATTACCCTCATTTTTTAGACCAATACcaaaatgatttga
aaagtCCACCTCAGAATATCACACCTAAATATGTCTACGAAGTTATGACA
AGCGACGCGCTAGTTCTGTGTACAACAAATTATGTTGCAGatcatttatc
aaaagttaaaggCTATACAGTATCACGGTATGTTATGAGCCAACCACCCA
CTAAAGAAATCGGTCTTGGTTTAGAAACTGCATATCACGGATGGGATTCA
GTGCTTCTGTTTGGGTTGAAATTCTATAAAGGAGAAACGCTCCCTGAAGA
GGacgaaaaattgatgaaacttTTCCGAGGAATGTATAAagatttcttgt
tttcaaatttcatgACACAATTTCAAGGCAAAACAACTGACTTTTGGGCA
GGTTTCACACGTTCTGAACAAGGAATGTTAACGTACCATCAGAATCGATG
TGAAATGTGGAATGTATTGGGAATTTTGAACCACTCATGGGGAAATCTTG
GTTATCCCGCCAGCGATGATTGAAACAAATGTTCTGCGAAGCtgataaac
tttttttattgaaacaagTTGAGCTAGAAAATGACTGACTCTTTAGGAAT
CagttgtaaaaataatgttTACTTTAATGTTTAtcttaatatttcttttt
aaaatttatcatgaCTTTTCCCAGCCTTAATTAATAACAATTTCTAtgta
ttttcaagaaaatttgtgatttgaaaaaagtttgtttttatggTGACCTC
GATAATATGATAATCGACTTTTAGCAGCTAACCCTTTCTGGATTATTAAA
TTACCAGCTCCAAAGTATTCCAAAGCCACAAAATGTACCAcgaaatctca
atcgaataacTTATTTTCTATCTCCTCATTTAAAGAAGCTTTCCCATATG
ATCAACCACTAGCCATTAATTTAAAATCTCAATTCAGCATGTTGTCTTTA
CTTTAAATTTAAGGCATGTATGCTTTACGGACGATTTAGATAATTCATAA
TGGAAAGTTGCCACAAGTGGAGAATAGTTTGGTTTATTGGTTGAAATGTT
AACGCCCCCAACCCTTTTTGCCTTGTATTGAATTTTGTGTGAGGTGAaaa
gtgttgttttttttttgtattattaAGATATTCAATATTTGTCttaattt
atataaaaaggcTTGTAATTCAATATGCTTGAATAAATCTAAAATAGTTG
AATAATCGAAAATAATATcaacttatttaaaaacaaaacctttaaataca
GAAAGAGATTATAACGTTTGGGTCTGAAAAATCATATTAAGCTACCGATT
TGATCTGGTCGACCAACTTTTTCCATAACTAGGATGTCTAAGGATACCAA
AAAACCACCTTAGGAGTACTCCAACTCCGGAGACGAAAGTTTCACCTATC
TGACCGACTATTAAAAAGAATATGACTTACAGTGAATGGTATGTAGGATT
GACTTTGCGTCCACCAGTATAACCAACTTTGGTTCTTAGTACTCCCCTCG
CACAACCAAATTGTGCCTCGGGAAACCAAAATCATGACATGGCGAATGTT
GCTTTACTAAATAAAAATTAATAGTTATTTATAAACCATCTATTTCATTA
GTGATAAAATAGATCAGACAGAGTAACGACTAAAATTACTTTCCAATTCT
GCTTTAA Run BLAST on NCBI protein sequence of carboxylesterase 3 >TCONS_00056426-protein ID=TCONS_00056426-protein|Name=carboxylesterase 3|organism=Clytia hemisphaerica|type=polypeptide|length=575bp
MKVKLQRKLLLFTILCVHITSTFAVPQNRIPDADRDYVNIDTECGPVEGK
RFTENVKWHNDSVNVYEFRNIPYAKPPVGKLRWRPPVRLSDDPAQCWDGV
LKYNKNVVACKQDHPFTPSVNTSEDCLVLTVRTPNLDPSSKLPVIVWIHG
GGMLWGYNEMFAFHPDTEFSAYMEAVTVSINYRLNVFGFMSLKELWIENG
PNKSYGNYGILDQIETLKWVKSNIKQFGGDSENVMIYGESGGGTGVYCLL
CSPLANGLFQKASPQSGAPNIRTTHEVADMKYRSIIDKADCQKESPDNIV
ECLQNIDADDFLSLFKGTSVTPYHWKMPTNEPYNGYPVEILDPVVVTKSP
DQIPVHQNTQVELLIGNCAQETGPFPHKPKPDANITTWADLQAALEPQMD
TFKKGHYPHFLDQYQNDLKSPPQNITPKYVYEVMTSDALVLCTTNYVADH
LSKVKGYTVSRYVMSQPPTKEIGLGLETAYHGWDSVLLFGLKFYKGETLP
EEDEKLMKLFRGMYKDFLFSNFMTQFQGKTTDFWAGFTRSEQGMLTYHQN
RCEMWNVLGILNHSWGNLGYPASDD Run BLAST on NCBI transcript from alignment at scaffold_276:267551..270934+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056426 ID=TCONS_00056426|Name=TCONS_00056426|organism=Clytia hemisphaerica|type=transcript|length=3384bp|location=Sequence derived from alignment at scaffold_276:267551..270934+ (Clytia hemisphaerica)
GCCTACCTGATATCGAAGAAGAAGATAGAAGATTAGAATTTAGATTTAAA
TTAGATTTTATTTCGCAAAAAAAATGCTTAGGATTTATGAATAAGTTTCT
TATACTAAATAGCGTATCAAAAATTGCTTATCTTGAGCAAAAACATTGGT
TACAATGTAGAATAATAACATAGGTTCATATTACAAAACAAGGTCAATAG
AGTATATGAAAACAGAATTCAAAATAGCAGTAGAGCTCGTATAGGATGTT
GAAACGTGGGACGATAGTGTGAGGAGTACTAAGGTAAGCTTACATAAATT
TAAATTCGTTTTTCGTATATTTTCCCCCTAATTGAAATTCAGATTGGGAC
TTGTTTTGGGATTGAAAATCTACTTCAAGCTTTCTATGTCATATCTTACA
TTCAAAACAAATGCATTtactctccataattcgaaatgGCCTCCCATGAG
AATGTCAAAGCAAAAGACAAAGAAGTCTAAGGGTAATGGtaatttttcct
ttcttttcagCTCTCTAAGAAAATGAAAGTCAAATTGCAAAGAAAATTAC
TTCTTTTCACGATTCTATGCGTTCACATAACATCTACGTTTGCCGTTCCG
CAGAACCGAATCCCTGATGCCGACCGGGATTACGTTAACATAGATACGGA
ATGCGGCCCGGTAGAGGGTAAGAGGTTTACGGAAAACGTTAAGTGGCATA
ACGATTCTGTAAACGTTTACGAGTTCCGTAATATACCTTACGCAAAACCA
CCCGTAGGAAAACTCAGATGGCGCCCTCCAGTTCGTTTAAGTGACGATCC
CGCCCAATGTTGGGATGGTGTTTTGAAATACAACAAAAACGTAGTAGCGT
GTAAGCAAGACCATCCTTTTACACCGTCCGTTAATACTAGCGAAGACTGC
CTGGTATTGACCGTACGTACCCCTAATCTGGATCCTAGCTCTAAATTGCC
AGTAATTGTATGGATACACGGAGGAGGAATGCTATGGGGATATAACGAAA
TGTTCGCTTTTCATCCGGACACGGAGTTTTCCGCTTATATGGAGGCAGTA
ACCGTATCAATAAACTACCGGTTGAACGTATTCGGATTTATGTCTTTGAA
AGAGTTATGGATTGAAAATGGACCAAACAAATCTTATGGAAATTATGGTA
TTCTGGACCAGATTGAGACACTAAAATGGGTTAAAAGTAACATCAAACAA
TTTGGTGGAGACTCTGAGAACGTTATGATTTATGGTGAATCAGGTGGCGG
TACTGGTGTTTACTGTTTATTATGCTCACCCCTGGCAAACGGACTATTTC
AGAAGGCAAGCCCGCAATCCGGAGCACCGAACATACGGACAACTCATGAA
GTAGCTGATATGAAGTATCGTAGTATTATTGACAAAGCTGATTGTCAAAA
AGAGAGTCCAGACAATATTGTTGAATGTTTGCAGAACATAGATGCTGATG
ACTTTCTATCGCTCTTCAAAGGAACTTCCGTTACACCTTATCATTGGAAA
ATGCCAACTAATGAACCATATAATGGCTACCCTGTTGAGATTCTGGATCC
GGTTGTAGTGACAAAATCACCAGACCAAATTCCAGTCCACCAGAATACTC
AAGTGGAGCTCTTGATCGGGAACTGTGCACAAGAAACCGGTCCGTTTCCT
CACAAACCGAAACCAGATGCCAACATCACAACGTGGGCAGACCTACAAGC
TGCACTAGAGCCTCAGATGGATACTTTTAAGAAAGGACATTACCCTCATT
TTTTAGACCAATACcaaaatgatttgaaaagtCCACCTCAGAATATCACA
CCTAAATATGTCTACGAAGTTATGACAAGCGACGCGCTAGTTCTGTGTAC
AACAAATTATGTTGCAGatcatttatcaaaagttaaaggCTATACAGTAT
CACGGTATGTTATGAGCCAACCACCCACTAAAGAAATCGGTCTTGGTTTA
GAAACTGCATATCACGGATGGGATTCAGTGCTTCTGTTTGGGTTGAAATT
CTATAAAGGAGAAACGCTCCCTGAAGAGGacgaaaaattgatgaaacttT
TCCGAGGAATGTATAAagatttcttgttttcaaatttcatgACACAATTT
CAAGGCAAAACAACTGACTTTTGGGCAGGTTTCACACGTTCTGAACAAGG
AATGTTAACGTACCATCAGAATCGATGTGAAATGTGGAATGTATTGGGAA
TTTTGAACCACTCATGGGGAAATCTTGGTTATCCCGCCAGCGATGATTGA
AACAAATGTTCTGCGAAGCtgataaactttttttattgaaacaagTTGAG
CTAGAAAATGACTGACTCTTTAGGAATCagttgtaaaaataatgttTACT
TTAATGTTTAtcttaatatttctttttaaaatttatcatgaCTTTTCCCA
GCCTTAATTAATAACAATTTCTAtgtattttcaagaaaatttgtgatttg
aaaaaagtttgtttttatggTGACCTCGATAATATGATAATCGACTTTTA
GCAGCTAACCCTTTCTGGATTATTAAATTACCAGCTCCAAAGTATTCCAA
AGCCACAAAATGTACCAcgaaatctcaatcgaataacTTATTTTCTATCT
CCTCATTTAAAGAAGCTTTCCCATATGATCAACCACTAGCCATTAATTTA
AAATCTCAATTCAGCATGTTGTCTTTACTTTAAATTTAAGGCATGTATGC
TTTACGGACGATTTAGATAATTCATAATGGAAAGTTGCCACAAGTGGAGA
ATAGTTTGGTTTATTGGTTGAAATGTTAACGCCCCCAACCCTTTTTGCCT
TGTATTGAATTTTGTGTGAGGTGAaaagtgttgttttttttttgtattat
taAGATATTCAATATTTGTCttaatttatataaaaaggcTTGTAATTCAA
TATGCTTGAATAAATCTAAAATAGTTGAATAATCGAAAATAATATcaact
tatttaaaaacaaaacctttaaatacaGAAAGAGATTATAACGTTTGGGT
CTGAAAAATCATATTAAGCTACCGATTTGATCTGGTCGACCAACTTTTTC
CATAACTAGGATGTCTAAGGATACCAAAAAACCACCTTAGGAGTACTCCA
ACTCCGGAGACGAAAGTTTCACCTATCTGACCGACTATTAAAAAGAATAT
GACTTACAGTGAATGGTATGTAGGATTGACTTTGCGTCCACCAGTATAAC
CAACTTTGGTTCTTAGTACTCCCCTCGCACAACCAAATTGTGCCTCGGGA
AACCAAAATCATGACATGGCGAATGTTGCTTTACTAAATAAAAATTAATA
GTTATTTATAAACCATCTATTTCATTAGTGATAAAATAGATCAGACAGAG
TAACGACTAAAATTACTTTCCAATTCTGCTTTAA Coding sequence (CDS) from alignment at scaffold_276:267551..270934+ >TCONS_00056426 ID=TCONS_00056426|Name=TCONS_00056426|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_276:267551..270934+ (Clytia hemisphaerica)
ATGAAAGTCAAATTGCAAAGAAAATTACTTCTTTTCACGATTCTATGCGT
TCACATAACATCTACGTTTGCCGTTCCGCAGAACCGAATCCCTGATGCCG
ACCGGGATTACGTTAACATAGATACGGAATGCGGCCCGGTAGAGGGTAAG
AGGTTTACGGAAAACGTTAAGTGGCATAACGATTCTGTAAACGTTTACGA
GTTCCGTAATATACCTTACGCAAAACCACCCGTAGGAAAACTCAGATGGC
GCCCTCCAGTTCGTTTAAGTGACGATCCCGCCCAATGTTGGGATGGTGTT
TTGAAATACAACAAAAACGTAGTAGCGTGTAAGCAAGACCATCCTTTTAC
ACCGTCCGTTAATACTAGCGAAGACTGCCTGGTATTGACCGTACGTACCC
CTAATCTGGATCCTAGCTCTAAATTGCCAGTAATTGTATGGATACACGGA
GGAGGAATGCTATGGGGATATAACGAAATGTTCGCTTTTCATCCGGACAC
GGAGTTTTCCGCTTATATGGAGGCAGTAACCGTATCAATAAACTACCGGT
TGAACGTATTCGGATTTATGTCTTTGAAAGAGTTATGGATTGAAAATGGA
CCAAACAAATCTTATGGAAATTATGGTATTCTGGACCAGATTGAGACACT
AAAATGGGTTAAAAGTAACATCAAACAATTTGGTGGAGACTCTGAGAACG
TTATGATTTATGGTGAATCAGGTGGCGGTACTGGTGTTTACTGTTTATTA
TGCTCACCCCTGGCAAACGGACTATTTCAGAAGGCAAGCCCGCAATCCGG
AGCACCGAACATACGGACAACTCATGAAGTAGCTGATATGAAGTATCGTA
GTATTATTGACAAAGCTGATTGTCAAAAAGAGAGTCCAGACAATATTGTT
GAATGTTTGCAGAACATAGATGCTGATGACTTTCTATCGCTCTTCAAAGG
AACTTCCGTTACACCTTATCATTGGAAAATGCCAACTAATGAACCATATA
ATGGCTACCCTGTTGAGATTCTGGATCCGGTTGTAGTGACAAAATCACCA
GACCAAATTCCAGTCCACCAGAATACTCAAGTGGAGCTCTTGATCGGGAA
CTGTGCACAAGAAACCGGTCCGTTTCCTCACAAACCGAAACCAGATGCCA
ACATCACAACGTGGGCAGACCTACAAGCTGCACTAGAGCCTCAGATGGAT
ACTTTTAAGAAAGGACATTACCCTCATTTTTTAGACCAATACcaaaatga
tttgaaaagtCCACCTCAGAATATCACACCTAAATATGTCTACGAAGTTA
TGACAAGCGACGCGCTAGTTCTGTGTACAACAAATTATGTTGCAGatcat
ttatcaaaagttaaaggCTATACAGTATCACGGTATGTTATGAGCCAACC
ACCCACTAAAGAAATCGGTCTTGGTTTAGAAACTGCATATCACGGATGGG
ATTCAGTGCTTCTGTTTGGGTTGAAATTCTATAAAGGAGAAACGCTCCCT
GAAGAGGacgaaaaattgatgaaacttTTCCGAGGAATGTATAAagattt
cttgttttcaaatttcatgACACAATTTCAAGGCAAAACAACTGACTTTT
GGGCAGGTTTCACACGTTCTGAACAAGGAATGTTAACGTACCATCAGAAT
CGATGTGAAATGTGGAATGTATTGGGAATTTTGAACCACTCATGGGGAAA
TCTTGGTTATCCCGCCAGCGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056426-exon-scaffold_276-1491911889:267551..267833 | TCONS_00056426-exon-scaffold_276-1491911889:267551..267833 | Clytia hemisphaerica | exon |
| TCONS_00056426-exon-scaffold_276-1510915933:267551..267833 | TCONS_00056426-exon-scaffold_276-1510915933:267551..267833 | Clytia hemisphaerica | exon |
| TCONS_00056426-exon-scaffold_276-1575043694:267551..267833 | TCONS_00056426-exon-scaffold_276-1575043694:267551..267833 | Clytia hemisphaerica | exon |
| TCONS_00056426-exon-scaffold_276-1491911889:268061..270934 | TCONS_00056426-exon-scaffold_276-1491911889:268061..270934 | Clytia hemisphaerica | exon |
| TCONS_00056426-exon-scaffold_276-1510915933:268061..270934 | TCONS_00056426-exon-scaffold_276-1510915933:268061..270934 | Clytia hemisphaerica | exon |
| TCONS_00056426-exon-scaffold_276-1575043694:268061..270934 | TCONS_00056426-exon-scaffold_276-1575043694:268061..270934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_276 | supercontig | scaffold_276:267551..270934 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056426 vs. Swiss-Prot (Human)
Match: EST2 (Cocaine esterase OS=Homo sapiens GN=CES2 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 7.180e-41 Identity = 98/290 (33.79%), Postives = 145/290 (50.00%), Query Frame = 2
Query: 440 GKRFTENVKWHNDSVNVYEFRNIPYAKPPVGKLRWRPPVRLSDDPAQCWDGVLKYNKNVVACKQDHPFT------------PSVNTSEDCLVLTVRTP-NLDPSSKLPVIVWIHGGGMLWGYNEMFAFHPDTEFSAYMEAVTVSINYRLNVFGFMSLKELWIENGPNKSYGNYGILDQIETLKWVKSNIKQFGGDSENVMIYGESGGGTGVYCLLCSPLANGLFQKASPQSGA---PNIRTTHEVADMKYRSIIDKADCQKESPDNIVECLQNIDADDFLSLFKGTSVTP 1261
G+ V + V F IP+AKPP+G LR+ PP +P + W GV + C QD PS + SEDCL L++ TP + S LPV+VWIHGG +++G M + + + +A V V I YRL V GF S G + GN+G LDQ+ L+WV+ NI FGG+ + V I+GES GGT V L+ SP++ GLF A +SG P + + AD+ + + + C + + +V CL+ ++ L++ K + P
Sbjct: 39 GQVLGSLVHVKGANAGVQTFLGIPFAKPPLGPLRFAPP-----EPPESWSGVRDGTTHPAMCLQDLTAVESEFLSQFNMTFPSDSMSEDCLYLSIYTPAHSHEGSNLPVMVWIHGGALVFG---MASLYDGSMLAALENVVVVIIQYRLGVLGFFS-------TGDKHATGNWGYLDQVAALRWVQQNIAHFGGNPDRVTIFGESAGGTSVSSLVVSPISQGLFHGAIMESGVALLPGLIASS--ADVISTVVANLSACDQVDSEALVGCLRGKSKEEILAINKPFKMIP 311
The following BLAST results are available for this feature:
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