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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056395 ID=TCONS_00056395|Name=TCONS_00056395|organism=Clytia hemisphaerica|type=transcript|length=1632bp
GTTTTGTTTCGCAGTGAGCTGGTGAGGggtgttgcagatttttcagagat
gtatttgaaagtttcttgattgataattgaaaatgcagatgatgtacagt
attatttcgatagagaagaaaccaCCCTTCAtgattggattaatcagatt
gaaagCACTGAGTCTTGAAGGCTTGAAttatgtaatttatgcaataatta
agccgtgcgccttgttcgacgaccataaaatgctgagtgggtagcggcct
taAGCTGTTGAGTGGTTTCcgttgaaatttttgtttatcgaAAGAGCTAC
CCCTGGCCTTATTGCTCCTACAGACTACAGcaaaatgatttattttgtgA
CATTTGTTACATGTCTTCCCTTCTGCTGGACAATTATTTTTATGTGGAAA
TTTTCCTCCACATTTATAACAGCTTTGACTAGTACTCCCTCCACGTCGCT
TGAAAGTCTTACCATCTCTCATTGCATCATTTGTTGGTCTTCTGGAGTCT
TGTGGTTGGTATCTCCTGTCTTGTTGATTTCTTTTGCTCTCGGCGTAGAA
AACATCTTCATCTGAAACACGTTTGTTTTTCGTGATTTCCTATATTTGTT
TTGTAGTGGCTTCGTAGGTTCGACCGATTGTCAATAATTCGTGTAAAGTT
TTATTTGGATGTTGGAAACTGTATAATCTCAACTTCTCTATGTTTGTTGA
AAGTTCGATTTGTTGTTTGATGTTTATATTTTCGAATCCACATTTTGCAG
CTTGTTCGCGGAGTCTTATGTAGAATTCATTCAAACCTTCTCCGTCcatt
tgttttaaatttctgaaaACAAATGTCTCATAGCTGGTGTTTGTTTGCGG
TGTGAAATGATTATCGAGAGCCTCGATAGTTGCATTGAATCCTGTGTCAG
TCGGCTTGACATTCTCGTACACTTCGTAGGTTTCATCTCCTACATAAGTT
AAAAACATTGCAAGTTTCTGTTTTTCTTCTGTAACTCCTATCGCCGTACA
CAAAAGTTCAAAGCGTTGTTTATATTTCTTCCATCTTGAAGATATTGTAT
CAACTTCTCCCAAGTCGAACGTAGGGAACGCTGGTAAGTTCAAATTTTTA
ACTGCCATATCTTTTCTTCTTCTAGGCATCCACAAACAAAACACgaaata
ctttcaaaataatttttatcttcGTCGCCAATTTAATGTTGTGTTATCTC
TTTCATATCTATTCATAAACTGAGACGCCAAACGGACTAGCGTCTGTATA
CATAAACGTTTCTTTATTGTTATCAAAATACGAACGAAAGTATATTTCCG
AAACATGGACAAACTAGTAGAAAACAAAATCGCCAACTGCCTCGCCTGTC
AAGCCGTCGAACGCCAAACTCGATCAACTCCACTGAAACCAACCGAAATT
CCAGAAAACGTTTGGGATACTGTCAACGTCGATTACCTTGGTCCGTTACC
CAATGGTAAATACCTGTTCGTCCTTATTGACCAACGTTCACGATATCCCG
TAGTCGACTTTACCAAGACAACCGACGCAACAACAGCAATTTCATCACTA
TCTCGCACCTTCAACTTGTTCGGAAATCCGATATACATTGTATCCGATAA
TGGCCCTTCATTCACATCGCAAAGATTGAAAG Run BLAST on NCBI protein sequence of TCONS_00056395-protein >TCONS_00056395-protein ID=TCONS_00056395-protein|Name=TCONS_00056395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MPRRRKDMAVKNLNLPAFPTFDLGEVDTISSRWKKYKQRFELLCTAIGVT
EEKQKLAMFLTYVGDETYEVYENVKPTDTGFNATIEALDNHFTPQTNTSY
ETFVFRNLKQMDGEGLNEFYIRLREQAAKCGFENINIKQQIELSTNIEKL
RLYSFQHPNKTLHELLTIGRTYEATTKQI Run BLAST on NCBI transcript from alignment at scaffold_275:15911..17542 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056395 ID=TCONS_00056395|Name=TCONS_00056395|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at scaffold_275:15911..17542 (Clytia hemisphaerica)
CTTTCAATCTTTGCGATGTGAATGAAGGGCCATTATCGGATACAATGTAT
ATCGGATTTCCGAACAAGTTGAAGGTGCGAGATAGTGATGAAATTGCTGT
TGTTGCGTCGGTTGTCTTGGTAAAGTCGACTACGGGATATCGTGAACGTT
GGTCAATAAGGACGAACAGGTATTTACCATTGGGTAACGGACCAAGGTAA
TCGACGTTGACAGTATCCCAAACGTTTTCTGGAATTTCGGTTGGTTTCAG
TGGAGTTGATCGAGTTTGGCGTTCGACGGCTTGACAGGCGAGGCAGTTGG
CGATTTTGTTTTCTACTAGTTTGTCCATGTTTCGGAAATATACTTTCGTT
CGTATTTTGATAACAATAAAGAAACGTTTATGTATACAGACGCTAGTCCG
TTTGGCGTCTCAGTTTATGAATAGATATGAAAGAGATAACACAACATTAA
ATTGGCGACgaagataaaaattattttgaaagtatttcGTGTTTTGTTTG
TGGATGCCTAGAAGAAGAAAAGATATGGCAGTTAAAAATTTGAACTTACC
AGCGTTCCCTACGTTCGACTTGGGAGAAGTTGATACAATATCTTCAAGAT
GGAAGAAATATAAACAACGCTTTGAACTTTTGTGTACGGCGATAGGAGTT
ACAGAAGAAAAACAGAAACTTGCAATGTTTTTAACTTATGTAGGAGATGA
AACCTACGAAGTGTACGAGAATGTCAAGCCGACTGACACAGGATTCAATG
CAACTATCGAGGCTCTCGATAATCATTTCACACCGCAAACAAACACCAGC
TATGAGACATTTGTtttcagaaatttaaaacaaatgGACGGAGAAGGTTT
GAATGAATTCTACATAAGACTCCGCGAACAAGCTGCAAAATGTGGATTCG
AAAATATAAACATCAAACAACAAATCGAACTTTCAACAAACATAGAGAAG
TTGAGATTATACAGTTTCCAACATCCAAATAAAACTTTACACGAATTATT
GACAATCGGTCGAACCTACGAAGCCACTACAAAACAAATATAGGAAATCA
CGAAAAACAAACGTGTTTCAGATGAAGATGTTTTCTACGCCGAGAGCAAA
AGAAATCAACAAGACAGGAGATACCAACCACAAGACTCCAGAAGACCAAC
AAATGATGCAATGAGAGATGGTAAGACTTTCAAGCGACGTGGAGGGAGTA
CTAGTCAAAGCTGTTATAAATGTGGAGGAAAATTTCCACATAAAAATAAT
TGTCCAGCAGAAGGGAAGACATGTAACAAATGTcacaaaataaatcattt
tgCTGTAGTCTGTAGGAGCAATAAGGCCAGGGGTAGCTCTTtcgataaac
aaaaatttcaacgGAAACCACTCAACAGCTtaaggccgctacccactcag
cattttatggtcgtcgaacaaggcgcacggcttaattattgcataaatta
cataaTTCAAGCCTTCAAGACTCAGTGctttcaatctgattaatccaatc
aTGAAGGGtggtttcttctctatcgaaataatactgtacatcatctgcat
tttcaattatcaatcaagaaactttcaaatacatctctgaaaaatctgca
acaccCCTCACCAGCTCACTGCGAAACAAAAC Coding sequence (CDS) from alignment at scaffold_275:15911..17542 >TCONS_00056395 ID=TCONS_00056395|Name=TCONS_00056395|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_275:15911..17542 (Clytia hemisphaerica)
ATGCCTAGAAGAAGAAAAGATATGGCAGTTAAAAATTTGAACTTACCAGC
GTTCCCTACGTTCGACTTGGGAGAAGTTGATACAATATCTTCAAGATGGA
AGAAATATAAACAACGCTTTGAACTTTTGTGTACGGCGATAGGAGTTACA
GAAGAAAAACAGAAACTTGCAATGTTTTTAACTTATGTAGGAGATGAAAC
CTACGAAGTGTACGAGAATGTCAAGCCGACTGACACAGGATTCAATGCAA
CTATCGAGGCTCTCGATAATCATTTCACACCGCAAACAAACACCAGCTAT
GAGACATTTGTtttcagaaatttaaaacaaatgGACGGAGAAGGTTTGAA
TGAATTCTACATAAGACTCCGCGAACAAGCTGCAAAATGTGGATTCGAAA
ATATAAACATCAAACAACAAATCGAACTTTCAACAAACATAGAGAAGTTG
AGATTATACAGTTTCCAACATCCAAATAAAACTTTACACGAATTATTGAC
AATCGGTCGAACCTACGAAGCCACTACAAAACAAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056395-exon-scaffold_275-1491911889:15911..17542 | TCONS_00056395-exon-scaffold_275-1491911889:15911..17542 | Clytia hemisphaerica | exon |
| TCONS_00056395-exon-scaffold_275-1510915933:15911..17542 | TCONS_00056395-exon-scaffold_275-1510915933:15911..17542 | Clytia hemisphaerica | exon |
| TCONS_00056395-exon-scaffold_275-1575043694:15911..17542 | TCONS_00056395-exon-scaffold_275-1575043694:15911..17542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_275 | supercontig | scaffold_275:15911..17542 . |
Blast
The following BLAST results are available for this feature:
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