TCONS_00056394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056394
Unique NameTCONS_00056394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056394 ID=TCONS_00056394|Name=TCONS_00056394|organism=Clytia hemisphaerica|type=transcript|length=261bp
tacttatGTAAAATTACCCCCTGTACGAAGGAAGTTTAGGGattataaaa
atttcaattctgTTATATTTTTAAACGAACTAAATTGTCAACTTAAGATA
GAAATATTGTAGATTATAgcttatttgagaaaatttttgtaaatttatta
aATGAGCATGCACCATCAAAGACAAGGTTAATCCGCGCTAATAATAAGCA
GCATGTAACCAAAGAACTCAGGAAAGCCATTATGCTCCgatcaaaactaa
aaaacatAGCA
Run BLAST on NCBI

transcript from alignment at scaffold_275:10236..10496

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056394 ID=TCONS_00056394|Name=TCONS_00056394|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at scaffold_275:10236..10496 (Clytia hemisphaerica)
TGCTatgttttttagttttgatcGGAGCATAATGGCTTTCCTGAGTTCTT
TGGTTACATGCTGCTTATTATTAGCGCGGATTAACCTTGTCTTTGATGGT
GCATGCTCATttaataaatttacaaaaattttctcaaataagcTATAATC
TACAATATTTCTATCTTAAGTTGACAATTTAGTTCGTTTAAAAATATAAc
agaattgaaatttttataatCCCTAAACTTCCTTCGTACAGGGGGTAATT
TTACataagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035539XLOC_035539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056394-exon-scaffold_275-1491911889:10236..10496TCONS_00056394-exon-scaffold_275-1491911889:10236..10496Clytia hemisphaericaexon
TCONS_00056394-exon-scaffold_275-1510915933:10236..10496TCONS_00056394-exon-scaffold_275-1510915933:10236..10496Clytia hemisphaericaexon
TCONS_00056394-exon-scaffold_275-1575043694:10236..10496TCONS_00056394-exon-scaffold_275-1575043694:10236..10496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_275supercontigscaffold_275:10236..10496 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.732152	0	4.94565	5.51267	3.44815	7.32158	6.06642	5.66366	3.03466	3.66452	1.155	1.78647	0.73436	1.06452	1.2508	0.497546	2.74954	0.0189982	3.44793	0	1.85387	0	1.38852	1.23922	2.99841	0.425549	1.0101	2.46065
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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