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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056374 ID=TCONS_00056374|Name=TCONS_00056374|organism=Clytia hemisphaerica|type=transcript|length=1175bp
CTGTTATGCATTACATTTCacaagttttgagaattttctgGTTTGTTGGC
AGTAGTGGTCATTGTGTCAACTGTGTACGGGATGGTACCTCGTTTCTCGA
GCAAAACTTGATCTTGTTCATAATTTTGAAGTACAGAAATGGATTGATGA
TGGAATTCAAAGCAGCCAAAGGGACAAAATACATTTCATAAACAATTGTA
AGGTTAGCAGATGATCTCGTGGCAAAAAGTGTAGCAAAGATGGCAAAGGG
AAACCAACATACGACAAAAGCCAGTACGATAGCAACAGAGAGAACGATAA
ATTTCCtctcttttttgtttcttcGAATTTCACATGGACTTAAAGATACA
TTGTTTTCCTTGTTCCTCAGATTCTTTTTACTTTGTTTCATTTTATACCA
TATCAAGGAATAAGcaacaaatagaaaaaaagtagTCGTATAAACCATCG
TGGATGTTAATATGTACTCAAAGTCACCAAGTCTTTCTGAACGGTATCCG
TATCTGTTAGAGATTTCAGATAAATTGGCTATATTGTTATCCATAAATAT
GTTTGGATCTTTCATTCTTTCTGCCATGTCTTGATAGGCGTCCACAAATT
CAAGCCATGTTAATTTTTCTATAGATTTTATCTCATCCACGCTTCGGTCA
AGATAATAGGATGACTGCTCTTCCCTCACAGTTATGTTGTAATTTGCTGG
ATCGAATGGTCttgtttcatttcttttgtactCCTGATCCTGACGTTCAG
CCGTCAGCCATATTAATTGAGTGTGGGGGCGATCTTTATTAAGAAGAATT
GAGTTCACAGTGAAGAGAGCTATCGAAACTACCCACATTGCGAGACAGGC
GAAAACAGcatgtttcttttttatgcaACGATGTTTAAATGGGAAGACCA
TTGCCAGTACTCGATCAACTGTCAATGCCAGCAAGCTGAAAATTGACATA
AGGAGGGTGATTCGAAACCCAATAACCAAACTCAGAAGCTGTAAGCGGAT
GATTGGAGCTTCTTTGTTTGTTATGTCATTAACAACATTAAGATGCATTG
TAACTGCTGCAAAGACGGTTATTGCTATTCCGAATATGGTGTCTGAGTTA
GCAAGATTAAGGAGATAATATTGTGATATGTGAAGTTTCTTCTTCATATC
TTTGACGATGAAAATGATCTCCGTT Run BLAST on NCBI protein sequence of TCONS_00056374-protein >TCONS_00056374-protein ID=TCONS_00056374-protein|Name=TCONS_00056374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
TEIIFIVKDMKKKLHISQYYLLNLANSDTIFGIAITVFAAVTMHLNVVND
ITNKEAPIIRLQLLSLVIGFRITLLMSIFSLLALTVDRVLAMVFPFKHRC
IKKKHAVFACLAMWVVSIALFTVNSILLNKDRPHTQLIWLTAERQDQEYK
RNETRPFDPANYNITVREEQSSYYLDRSVDEIKSIEKLTWLEFVDAYQDM
AERMKDPNIFMDNNIANLSEISNRYGYRSERLGDFEYILTSTMVYTTTFF
LFVAYSLIWYKMKQSKKNLRNKENNVSLSPCEIRRNKKERKFIVLSVAIV
LAFVVCWFPFAIFATLFATRSSANLTIVYEMYFVPLAALNSIINPFLYFK
IMNKIKFCSRNEVPSRTQLTQ Run BLAST on NCBI transcript from alignment at scaffold_273:226040..227214 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056374 ID=TCONS_00056374|Name=TCONS_00056374|organism=Clytia hemisphaerica|type=transcript|length=1175bp|location=Sequence derived from alignment at scaffold_273:226040..227214 (Clytia hemisphaerica)
AACGGAGATCATTTTCATCGTCAAAGATATGAAGAAGAAACTTCACATAT
CACAATATTATCTCCTTAATCTTGCTAACTCAGACACCATATTCGGAATA
GCAATAACCGTCTTTGCAGCAGTTACAATGCATCTTAATGTTGTTAATGA
CATAACAAACAAAGAAGCTCCAATCATCCGCTTACAGCTTCTGAGTTTGG
TTATTGGGTTTCGAATCACCCTCCTTATGTCAATTTTCAGCTTGCTGGCA
TTGACAGTTGATCGAGTACTGGCAATGGTCTTCCCATTTAAACATCGTtg
cataaaaaagaaacatgCTGTTTTCGCCTGTCTCGCAATGTGGGTAGTTT
CGATAGCTCTCTTCACTGTGAACTCAATTCTTCTTAATAAAGATCGCCCC
CACACTCAATTAATATGGCTGACGGCTGAACGTCAGGATCAGGagtacaa
aagaaatgaaacaaGACCATTCGATCCAGCAAATTACAACATAACTGTGA
GGGAAGAGCAGTCATCCTATTATCTTGACCGAAGCGTGGATGAGATAAAA
TCTATAGAAAAATTAACATGGCTTGAATTTGTGGACGCCTATCAAGACAT
GGCAGAAAGAATGAAAGATCCAAACATATTTATGGATAACAATATAGCCA
ATTTATCTGAAATCTCTAACAGATACGGATACCGTTCAGAAAGACTTGGT
GACTTTGAGTACATATTAACATCCACGATGGTTTATACGActactttttt
tctatttgttgCTTATTCCTTGATATGGTATAAAATGAAACAAAGTAAAA
AGAATCTGAGGAACAAGGAAAACAATGTATCTTTAAGTCCATGTGAAATT
CgaagaaacaaaaaagagaGGAAATTTATCGTTCTCTCTGTTGCTATCGT
ACTGGCTTTTGTCGTATGTTGGTTTCCCTTTGCCATCTTTGCTACACTTT
TTGCCACGAGATCATCTGCTAACCTTACAATTGTTTATGAAATGTATTTT
GTCCCTTTGGCTGCTTTGAATTCCATCATCAATCCATTTCTGTACTTCAA
AATTATGAACAAGATCAAGTTTTGCTCGAGAAACGAGGTACCATCCCGTA
CACAGTTGACACAATGACCACTACTGCCAACAAACcagaaaattctcaaa
acttgtGAAATGTAATGCATAACAG Coding sequence (CDS) from alignment at scaffold_273:226040..227214 >TCONS_00056374 ID=TCONS_00056374|Name=TCONS_00056374|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_273:226040..227214 (Clytia hemisphaerica)
ACGGAGATCATTTTCATCGTCAAAGATATGAAGAAGAAACTTCACATATC
ACAATATTATCTCCTTAATCTTGCTAACTCAGACACCATATTCGGAATAG
CAATAACCGTCTTTGCAGCAGTTACAATGCATCTTAATGTTGTTAATGAC
ATAACAAACAAAGAAGCTCCAATCATCCGCTTACAGCTTCTGAGTTTGGT
TATTGGGTTTCGAATCACCCTCCTTATGTCAATTTTCAGCTTGCTGGCAT
TGACAGTTGATCGAGTACTGGCAATGGTCTTCCCATTTAAACATCGTtgc
ataaaaaagaaacatgCTGTTTTCGCCTGTCTCGCAATGTGGGTAGTTTC
GATAGCTCTCTTCACTGTGAACTCAATTCTTCTTAATAAAGATCGCCCCC
ACACTCAATTAATATGGCTGACGGCTGAACGTCAGGATCAGGagtacaaa
agaaatgaaacaaGACCATTCGATCCAGCAAATTACAACATAACTGTGAG
GGAAGAGCAGTCATCCTATTATCTTGACCGAAGCGTGGATGAGATAAAAT
CTATAGAAAAATTAACATGGCTTGAATTTGTGGACGCCTATCAAGACATG
GCAGAAAGAATGAAAGATCCAAACATATTTATGGATAACAATATAGCCAA
TTTATCTGAAATCTCTAACAGATACGGATACCGTTCAGAAAGACTTGGTG
ACTTTGAGTACATATTAACATCCACGATGGTTTATACGActacttttttt
ctatttgttgCTTATTCCTTGATATGGTATAAAATGAAACAAAGTAAAAA
GAATCTGAGGAACAAGGAAAACAATGTATCTTTAAGTCCATGTGAAATTC
gaagaaacaaaaaagagaGGAAATTTATCGTTCTCTCTGTTGCTATCGTA
CTGGCTTTTGTCGTATGTTGGTTTCCCTTTGCCATCTTTGCTACACTTTT
TGCCACGAGATCATCTGCTAACCTTACAATTGTTTATGAAATGTATTTTG
TCCCTTTGGCTGCTTTGAATTCCATCATCAATCCATTTCTGTACTTCAAA
ATTATGAACAAGATCAAGTTTTGCTCGAGAAACGAGGTACCATCCCGTAC
ACAGTTGACACAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056374-exon-scaffold_273-1491911889:226040..227214 | TCONS_00056374-exon-scaffold_273-1491911889:226040..227214 | Clytia hemisphaerica | exon |
| TCONS_00056374-exon-scaffold_273-1510915933:226040..227214 | TCONS_00056374-exon-scaffold_273-1510915933:226040..227214 | Clytia hemisphaerica | exon |
| TCONS_00056374-exon-scaffold_273-1575043694:226040..227214 | TCONS_00056374-exon-scaffold_273-1575043694:226040..227214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_273 | supercontig | scaffold_273:226040..227214 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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