TCONS_00056371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056371
Unique NameTCONS_00056371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056371 ID=TCONS_00056371|Name=TCONS_00056371|organism=Clytia hemisphaerica|type=transcript|length=555bp
NNATTAATTTCTATGTCTTGATAAAGAGGGTTGTTCTCTTTGAAATAATT
CAGTACGCGCTGAATGAAATCAGGTCTGATTGGTTCAAAAACGGCATGTC
CTTTATATTCCAATTTCCTTTTGAGTTTAACAATGACTAGTCCATTTGCA
TTTGCTCTTCTTGGTAAAGTATTAGCATTATCTTCAACATCAATAGGTAC
ATTACAAATAGAACCTTTGAGTTTGGGGAACTGACCTTTTGGCATGattg
caatttttttgaataacattctgcgagaaatcaaaattttttcaagtctA
CGAAGAGTACGGAATTCAGCAGGTAATTCATCAAGGCTCagtttattttt
gacagattggCACGGCAactcattttttttaagtttactATGGCATGTTC
TACAAATGTATAGTTGGCCGTCAAATGAAAAAACTTCAGAATAATAATGT
TCTTGTGGGATATCATATTTTTCAGGCGAGTATTTGACAACTGTTTTTTT
ATAGAGGCATCTGTTACAGCAAACACAGATGTAGAAAGGACCTTCATAAA
TAANN
Run BLAST on NCBI

protein sequence of TCONS_00056371-protein

>TCONS_00056371-protein ID=TCONS_00056371-protein|Name=TCONS_00056371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
XIYEGPFYICVCCNRCLYKKTVVKYSPEKYDIPQEHYYSEVFSFDGQLYI
CRTCHSKLKKNELPCQSVKNKLSLDELPAEFRTLRRLEKILISRRMLFKK
IAIMPKGQFPKLKGSICNVPIDVEDNANTLPRRANANGLVIVKLKRKLEY
KGHAVFEPIRPDFIQRVLNYFKENNPLYQDIEIN
Run BLAST on NCBI

transcript from alignment at scaffold_273:210058..210612

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056371 ID=TCONS_00056371|Name=TCONS_00056371|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at scaffold_273:210058..210612 (Clytia hemisphaerica)
NNTTATTTATGAAGGTCCTTTCTACATCTGTGTTTGCTGTAACAGATGCC
TCTATAAAAAAACAGTTGTCAAATACTCGCCTGAAAAATATGATATCCCA
CAAGAACATTATTATTCTGAAGTTTTTTCATTTGACGGCCAACTATACAT
TTGTAGAACATGCCATagtaaacttaaaaaaaatgagtTGCCGTGccaat
ctgtcaaaaataaactGAGCCTTGATGAATTACCTGCTGAATTCCGTACT
CTTCGTagacttgaaaaaattttgatttctcgcagaatgttattcaaaaa
aattgcaatCATGCCAAAAGGTCAGTTCCCCAAACTCAAAGGTTCTATTT
GTAATGTACCTATTGATGTTGAAGATAATGCTAATACTTTACCAAGAAGA
GCAAATGCAAATGGACTAGTCATTGTTAAACTCAAAAGGAAATTGGAATA
TAAAGGACATGCCGTTTTTGAACCAATCAGACCTGATTTCATTCAGCGCG
TACTGAATTATTTCAAAGAGAACAACCCTCTTTATCAAGACATAGAAATT
AATNN

Coding sequence (CDS) from alignment at scaffold_273:210058..210612

>TCONS_00056371 ID=TCONS_00056371|Name=TCONS_00056371|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_273:210058..210612 (Clytia hemisphaerica)
NTTATTTATGAAGGTCCTTTCTACATCTGTGTTTGCTGTAACAGATGCCT
CTATAAAAAAACAGTTGTCAAATACTCGCCTGAAAAATATGATATCCCAC
AAGAACATTATTATTCTGAAGTTTTTTCATTTGACGGCCAACTATACATT
TGTAGAACATGCCATagtaaacttaaaaaaaatgagtTGCCGTGccaatc
tgtcaaaaataaactGAGCCTTGATGAATTACCTGCTGAATTCCGTACTC
TTCGTagacttgaaaaaattttgatttctcgcagaatgttattcaaaaaa
attgcaatCATGCCAAAAGGTCAGTTCCCCAAACTCAAAGGTTCTATTTG
TAATGTACCTATTGATGTTGAAGATAATGCTAATACTTTACCAAGAAGAG
CAAATGCAAATGGACTAGTCATTGTTAAACTCAAAAGGAAATTGGAATAT
AAAGGACATGCCGTTTTTGAACCAATCAGACCTGATTTCATTCAGCGCGT
ACTGAATTATTTCAAAGAGAACAACCCTCTTTATCAAGACATAGAAATTA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035519XLOC_035519Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056371-proteinTCONS_00056371-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056371-exon-scaffold_273-1491911889:210058..210612TCONS_00056371-exon-scaffold_273-1491911889:210058..210612Clytia hemisphaericaexon
TCONS_00056371-exon-scaffold_273-1510915933:210058..210612TCONS_00056371-exon-scaffold_273-1510915933:210058..210612Clytia hemisphaericaexon
TCONS_00056371-exon-scaffold_273-1575043694:210058..210612TCONS_00056371-exon-scaffold_273-1575043694:210058..210612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:210058..210612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36798	1.67083	2.32249	2.37999	5.36902	3.29548	3.48875	6.27116	1.29609	1.04906	1.66758	1.50527	1.42435	1.21094	1.13265	2.0647	0.692766	1.22406	1.19899	2.16713	4.04203	5.50886	0.822967	1.56452	1.95216	2.719	2.73986	1.36687	1.89607	1.22714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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