TCONS_00056367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056367
Unique NameTCONS_00056367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056367 ID=TCONS_00056367|Name=TCONS_00056367|organism=Clytia hemisphaerica|type=transcript|length=281bp
caattctttctcaaaaaaatttcaaatcaaaacaaagattcgGCGCtcgc
tttaatttttttccctCCAAAAAAGTTTGCTAGTCCCAACCCCCTCGCCC
GGAAACACGGTAATAAGAACtatacaataataataataaaaagtaaactA
TAAATGTACATGCAAAAGGAGAATTACAGACTTGAAGCTTCTTCCAcgcc
ttttttttcttcagctaAAATCATAAGCtcagacatacagatttctgtat
gtcagGTGCGTACGTGTTTGCGTTTATTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_273:77089..77369

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056367 ID=TCONS_00056367|Name=TCONS_00056367|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at scaffold_273:77089..77369 (Clytia hemisphaerica)
AAAAATAAACGCAAACACGTACGCACctgacatacagaaatctgtatgtc
tgaGCTTATGATTTtagctgaagaaaaaaaaggcgTGGAAGAAGCTTCAA
GTCTGTAATTCTCCTTTTGCATGTACATTTATagtttactttttattatt
attattgtataGTTCTTATTACCGTGTTTCCGGGCGAGGGGGTTGGGACT
AGCAAACTTTTTTGGagggaaaaaaattaaagcgaGCGCcgaatctttgt
tttgatttgaaatttttttgagaaagaattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035515XLOC_035515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056367-exon-scaffold_273-1491911889:77089..77369TCONS_00056367-exon-scaffold_273-1491911889:77089..77369Clytia hemisphaericaexon
TCONS_00056367-exon-scaffold_273-1510915933:77089..77369TCONS_00056367-exon-scaffold_273-1510915933:77089..77369Clytia hemisphaericaexon
TCONS_00056367-exon-scaffold_273-1575043694:77089..77369TCONS_00056367-exon-scaffold_273-1575043694:77089..77369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:77089..77369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.678177	0	13.67	8.54074	6.00992	17.8771	2.29694	4.55829	0	2.37776	5.27679	1.41355	4.25011	2.50891	5.06303	5.46655	6.54752	8.0578	10.6248	13.9029	0	2.56162	1.6222	1.44111	40.141	37.235	21.7711	14.6667
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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