TCONS_00056362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056362
Unique NameTCONS_00056362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056362 ID=TCONS_00056362|Name=TCONS_00056362|organism=Clytia hemisphaerica|type=transcript|length=729bp
CAGGCACCATACCACCAAGCTCCCAAATATTGTTTAGCACAATTCCTGCT
CCAGGCATCATTGTCGTTATCAAAAGTAGTGAATCGACGACCATTATGAG
CTGTAGTTGCCAATTGATTACCAGCATCTCCTGAGTAACCAGAAGCCGAG
AGTTGGTATTTAGATGCTTCATTGCCGACACTGAAACTGGTGAATCTTGC
ATATTTGGTGATCCCTTCATAGTTGGTCATCTCAATCCATAACTCGTTGG
CACCATTATCTGTTAAAGCATGAATTTGATCATTCCCAAGCCAATGTTCA
TTTTGAAGATATCCAAAACCATTTTTATAGTTTTCCCAATTACGATAGAA
ATTGGTTGATCCATCGATACGTTTTTGGATGACAACCCAACCACCACGTC
TCCAGTTTGATGAAGGATAAGTCGAATTCATATCACAATACACATCCATG
ATGACACCTCCTGGTGCGATTCTGTAGATTCCACTTGCCGTAAAACCAGC
ATTGAACAAGTCTTGACATCCTGTTTTCAATACAACAGGACTCAATTCAC
ATCCTCTGCAATCACAATAATATCCATCTTGAATGAAAGGGTCATCCGAG
CATCTGCAATGATCACCACAAGTGTTGGATGGCAAAGATGAACAGTAGCC
TTCTCTCTTGGAAACACCACCTCGGTTGCAAACGCCAGGACAACTCAAAG
ATGCAGTTACCATAGATGTCATTAAAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_273:220428..221213-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056362 ID=TCONS_00056362|Name=TCONS_00056362|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at scaffold_273:220428..221213- (Clytia hemisphaerica)
CAGGCACCATACCACCAAGCTCCCAAATATTGTTTAGCACAATTCCTGCT
CCAGGCATCATTGTCTTGATCAAAAGTGGTGAATCGACGACCATTATGAA
TTNTGCTCCAGGCATCATTGTCGTTATCAAAAGTAGTGAATCGACGACCA
TTATGAGCTGTAGTTGCCAATTGATTACCAGCATCTCCTGAGTAACCAGA
AGCCGAGAGTTGGTATTTAGATGCTTCATTGCCGACACTGAAACTGGTGA
ATCTTGCATATTTGGTGATCCCTTCATAGTTGGTCATCTCAATCCATAAC
TCGTTGGCACCATTATCTGTTAAAGCATGAATTTGATCATTCCCAAGCCA
ATGTTCATTTTGAAGATATCCAAAACCATTTTTATAGTTTTCCCAATTAC
GATAGAAATTGGTTGATCCATCGATACGTTTTTGGATGACAACCCAACCA
CCACGTCTCCAGTTTGATGAAGGATAAGTCGAATTCATATCACAATACAC
ATCCATGATGACACCTCCTGGTGCGATTCTGTAGATTCCACTTGCCGTAA
AACCAGCATTGAACAAGTCTTGACATCCTGTTTTCAATACAACAGGACTC
AATTCACATCCTCTGCAATCACAATAATATCCATCTTGAATGAAAGGGTC
ATCCGAGCATCTGCAATGATCACCACAAGTGTTGGATGGCAAAGATGAAC
AGTAGCCTTCTCTCTTGGAAACACCACCTCGGTTGCAAACGCCAGGACAA
CTCAAAGATGCAGTTACCATAGATGTCATTAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035510XLOC_035510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056362-exon-scaffold_273-1575043694:221160..221213TCONS_00056362-exon-scaffold_273-1575043694:221160..221213Clytia hemisphaericaexon
TCONS_00056362-exon-scaffold_273-1575043694:220428..221102TCONS_00056362-exon-scaffold_273-1575043694:220428..221102Clytia hemisphaericaexon
TCONS_00056362-exon-scaffold_273-1510915933:221160..221213TCONS_00056362-exon-scaffold_273-1510915933:221160..221213Clytia hemisphaericaexon
TCONS_00056362-exon-scaffold_273-1510915933:220428..221102TCONS_00056362-exon-scaffold_273-1510915933:220428..221102Clytia hemisphaericaexon
TCONS_00056362-exon-scaffold_273-1491911889:221160..221213TCONS_00056362-exon-scaffold_273-1491911889:221160..221213Clytia hemisphaericaexon
TCONS_00056362-exon-scaffold_273-1491911889:220428..221102TCONS_00056362-exon-scaffold_273-1491911889:220428..221102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:220428..221213 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.287591	0.308998	0.0755765	0.184014	0	0	0	0	0	0	0	0.687678	2.89052	0.489001	0.124726	1.25559	1.9119	0.66705	0.138844	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00056362 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.743e-43
Identity = 78/172 (45.35%), Postives = 107/172 (62.21%), Query Frame = -2 
Query:    9 CQDLFNAGFTASGIYRI-APGGVIMDVYCDMNSTYPSSNWRRGGWVVIQKRIDGSTNFYRNWENYKNGFGYLQNEHWLGNDQIHALTDNGANELWIEMTNYEGITKYARFTSFSVGNEASKYQLSASGY-SGDAGNQLATTAHNGRRFTTFDNDNDAWSRNCAKQYLGAWWY 518
            C+DL + G+  SG + I  P    + V CDM++         GGW V Q+R+DGS +FYR+W  YK GFG    E WLGND IHALT  G++EL +++ ++EG  ++A++ SF V +EA KY+L    +  G AGN L  T HN   F+T D DND  S NCA+++ GAWWY
Sbjct:  118 CKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTD-------GGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSL--TGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWY 280
The following BLAST results are available for this feature:
BLAST of TCONS_00056362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN18.743e-4345.35Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2[more]
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