TCONS_00056351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056351
Unique NameTCONS_00056351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056351 ID=TCONS_00056351|Name=TCONS_00056351|organism=Clytia hemisphaerica|type=transcript|length=1186bp
AGAGAGCAGTGTCGATCATTTTTGGAACTATATGAGGTAGATTGGACAGC
CTTTTCAGTGAACGCGCAGGCCGTCTACGAGGATCGAAGTGCAAATGCGC
CTCAGAATTTACCATTGGAAAGCGATGTCAAGTTGTTCAAACAGTATTGC
GTTGACGAAAtcacaaaaatgttgaaatatgaTTCCTTCTCAAAAGATGA
CTACTCGTTGCTTTCCAATCTCACACTTGCAAGGCTGATGACCTTCAATG
CAAGGAGAGGCTCAGAGGTTGCAAGGTTAAAATTGGATCGTTGGGAGGGG
GTTATGGACGACCGTTGGAAAAAAAAGGAGTACATCGATCTCATCGATGA
CGATGTTGAGCGTAAACTGGCCGAGAAATTGAAACTTTGTTATATCGagg
ggaaaaagaaaaagaggtcgaagaaaaagaagaaccaCGTTCCGATACTT
TTCCCTGAAGAATGTGTGGAGGCAATTCAACGTCTAGTCTCTTTCAGGGA
TAAATTTGTAGACGAAGAAAATGAGTATGTTTTTCACTCCGGCGAGCTCT
ACATTAAAGGTTGGAACGCTTTGCAAACCGTGGCAAAGGAAATTGGCGAT
CGTTTGACATCGCCAAAGTTACTTACGCCAACTAGGACAAGAAAATTCCT
AGCCACTATCTTACAACTGATGCAGCTCAATGACGCAGAGCTGGGCTGGA
TGACGACTCACATGGGACATACGAAAGATGTCCACCTCGGCTTCTACCGT
CAGGAGGATTCTACGATTGAGCTGACAAAAGTGGCTAAGgTGTTATGTGC
GGTGGATCAAGGGGCAGAGTTGAAGAACAAAAAGATTGACGATCTCCTAA
CGGAAAACAATGTTGAAGAGAGCAGGACTGAAGACGCTGAAGACAACGAT
ATTCAGCAGCAACGAGAAGACCCTAAGaaAACTAAGAAGACGTGGAAAAA
ATGGACGAAAGCCGAAACAGAAGCATTACATAAAGCATTCCAACACCATG
TGAAATCAAAAGTCAAACCAATGCAACATGAAGTCCTAAATGCATTGAAT
AGGTACCCAGTACTGAAGGAGCGGGGAGCAgacaaagtgaaaaataaaat
aagtaaaactatagatattttgaagaaaaaaagttcggACTAAACTTTAT
ATTTAAAAGTTATGGCGatatttattttacaaaaac
Run BLAST on NCBI

protein sequence of TCONS_00056351-protein

>TCONS_00056351-protein ID=TCONS_00056351-protein|Name=TCONS_00056351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
REQCRSFLELYEVDWTAFSVNAQAVYEDRSANAPQNLPLESDVKLFKQYC
VDEITKMLKYDSFSKDDYSLLSNLTLARLMTFNARRGSEVARLKLDRWEG
VMDDRWKKKEYIDLIDDDVERKLAEKLKLCYIEGKKKKRSKKKKNHVPIL
FPEECVEAIQRLVSFRDKFVDEENEYVFHSGELYIKGWNALQTVAKEIGD
RLTSPKLLTPTRTRKFLATILQLMQLNDAELGWMTTHMGHTKDVHLGFYR
QEDSTIELTKVAKVLCAVDQGAELKNKKIDDLLTENNVEESRTEDAEDND
IQQQREDPKKTKKTWKKWTKAETEALHKAFQHHVKSKVKPMQHEVLNALN
RYPVLKERGADKVKNKISKTIDILKKKSSD
Run BLAST on NCBI

transcript from alignment at scaffold_273:179682..183002+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056351 ID=TCONS_00056351|Name=TCONS_00056351|organism=Clytia hemisphaerica|type=transcript|length=3321bp|location=Sequence derived from alignment at scaffold_273:179682..183002+ (Clytia hemisphaerica)
AGAGAGCAGTGTCGATCATTTTTGGAACTATATGAGGTAGATTGGACAGC
CTTTTCAGTGAACGCGCAGGCCGTCTACGAGGATCGAAGTGCAAATGCGC
CTCAGAATTTACCATTGGAAAGCGATGTCAAGTTGTTCAAACAGTATTGC
GTTGACGAAAtcacaaaaatgttgaaatatgaTTCCTTCTCAAAAGATGA
CTACTCGTTGCTTTCCAATCTCACACTTGCAAGGCTGATGACCTTCAATG
CAAGGAGAGGTCGGTATTTCCTTATCCGTTATTCATCAGAATTTGTATTT
AGTCTGGTTACTCTAGGGTCTGAGTGTAATTGAGTATGTAAATGATCATT
TTCATGACCTTTCAGATGGCGAGAtagttgaaatttctttttgttgaaaG
GGATTTGTATTGCTTGTAGAGCCTGTTGTGCATATTGTAAATGTTTGTAA
TAATATGTGTAGATTTGCCACCAAATGAAAATTCCTTAGCAACAGCGTGA
GGAAACGAAAAATCCGCTATTATGGAAAATCTACCACGCCTAAAAACCTG
ACCAAACCTTTTTTCATCTGCATCATGACACCTAAACAGGATTAGAAGTC
AAAGCCCTCCACACTCAATTACCCTCAGAACCTGAAAAACCCAATGGGTC
CTAGAACTCTCAGCAACAGTTgattgaaaaagactttttaatacaaatcc
ctgtgaacaaaaagaaatagaaatttcAACTGTCTCGTCAtctgaaaaat
cttgaaaaataagcaagattttgaaatatttgattgattttgaaaagttt
gattaacTTGGTACTTCAAAATAGCTTGGAACCCTTGATGACTACTATCT
AGATCTACATTTTTGAGCCAAGCCcaaaagagaaattttgaaatatacta
AAAGAAAATGATATGGTTGATAGGGTTTAGATCAATCTCATATAGCTGTT
GAATATCAAAAGTGCAAAAGCTTTGAATTTGGTTATATTGAAATGCgttt
atatattttcattcaGGCTCAGAGGTTGCAAGGTTAAAATTGGATCGTTG
GGAGGGGGTTATGGACGACCGTTGGAAAAAAAAGGAGTACATCGATCTCA
TCGATGACGATGTTGAGCGTAAACTGGCCGAGAAATTGAAACTTTGTTAT
ATCGaggggaaaaagaaaaagaggtcgaagaaaaagaagaaccaCGTTCC
GATACTTTTCCCTGAAGAATGTGTGGAGGCAATTCAACGTCTAGTCTCTT
TCAGGGATAAATTTGTAGACGAAGAAAATGAGTATGTTTTTCACTCCGGC
GAGCTCTACATTAAAGGTTGGAACGCTTTGCAAACCGTGGCAAAGGAAAT
TGGCGATCGTTTGACATCGCCAAAGTTACTTACGCCAACTAGGACAAGAA
AATTCCTAGCCACTATCTTACAACTGATGCAGCTCAATGACGCAGAGCTG
GGCTGGATGACGACTCACATGGGACATACGAAAGATGTCCACCTCGGCTT
CTACCGTCAGGAGGATTCTACGATTGAGCTGACAAAAGTGGCTAAGGTAC
TTAATTTTGATCACTTGTTAACTACCTCGCATTTTATGTCTctagttttg
ccaaaatttcagACGAGGCCAAAACTTGAGATGATTTGATTAATGGACTG
GTTTTACAAATATTTGGAACGCTTGGTGAATAAGAACCAAGACAATAGCC
TTGAAGTCCTATTTattaaacaaaaattgaatgaagaataaatatgaatt
tcttttgatttaaggTGTTATGTGCGGTGGATCAAGGGGCAGAGTTGAAG
AACAAAAAGATTGACGATCTCCTAACGGGTAGGTATTTTTACGTGTCCAG
TATGAATTTAATGCAGGGTCTAAGTGTTGTACTTTAATTGCCGAAACGTT
CAAAATTTACAAGGTCATAAGCACAACTGCATTAACTTCGGAAAGCTTCT
ACCGTGCAACAGCTGCAAAAAAGTATATAGAAAACTTTGAAGGAGTAGGC
CGATCACAAGTTGTTTGACCTAGAACCCTCAGATGGCCAGATTTGGTCGT
AAAAACCAATTTCTATATAACTCCAGATCATTTCAGAAATCGAATATACT
TGTTTAAAAGTCTCCTATGTATTCCTTTGACAGCTTTAAGGTGGTATTTG
GTAGGATGTCCCAGCCTAGATAGTTCGTATTTCTGTCTGACTACAATCGC
TTATGAATATTTAGTATAAGACCAGGTCACACTGAAGTCCACTTCCCATT
TCCATTTTCCAGCTATTTGTTATACAAAGTATCTTTTTATAAGCGTTAGG
TGAATTTTTCAGAGCctcatttttgacaaaataattttgtcaCTTTATTA
TTCAATTAATTAATTTTGTGAGTAATTCTTTTCATAGAAATATTGTTCCT
TTAATCCATGAATATTTTGAATCTATAGAAAACAATGTTGAAGAGAGCAG
GACTGAAGACGCTGAAGACAACGATATTCAGCAGCAACGAGAAGACCCTA
AGGTTAGTATTGCTTGGTACATCAGCCCAAAATCTACTACTTGTTCACCT
AATTTCGTTCTTTTTCCGGGGCAAAAATGccgattttaaaattttcgcga
ggaCTAAATTTCATCcaatttaatccacgcgaaatttaatccaccaATGG
TAGTTAGACATTTTTTTGCATTAGCATTTATCATCTTAGCTTTTTTGACA
TTACACGCAGGCGTGTGGTAGTATTAATGGGCCTTTGTATACTCAGCCAA
attattttctgaaatattgcaCTCAATCTTGAAATGTAATTTGAATTGAG
AAATTTCGTAATGTAGCCGCTCGATTTTTCCTGTAATTTCCTTGCAATGC
AGTAATAATTTAGCAGAAAAGATTGTAAGAGTGCTGCAACAGAATAGATC
TGATCTGTAATTTTTTCTGTTAGAAAGGCTTTTTCATTAGACGGTCACAT
TACTTTCAGGTTTCAAGTGCGTGCGATGCCTTTGATTGCATTGCAGGATT
GCAGAAAAGCATACTTTAGCTTTAGTCatgtaaaaaaagacaaatccttt
ttctttttctagaaAACTAAGAAGACGTGGAAAAAATGGACGAAAGCCGA
AACAGAAGCATTACATAAAGCATTCCAACACCATGTGAAATCAAAAGTCA
AACCAATGCAACATGAAGTCCTAAATGCATTGAATAGGTACCCAGTACTG
AAGGAGCGGGGAGCAgacaaagtgaaaaataaaataagtaaaactataga
tattttgaagaaaaaaagttcggACTAAACTTTATATTTAAAAGTTATGG
CGatatttattttacaaaaac

Coding sequence (CDS) from alignment at scaffold_273:179682..183002+

>TCONS_00056351 ID=TCONS_00056351|Name=TCONS_00056351|organism=Clytia hemisphaerica|type=CDS|length=5715bp|location=Sequence derived from alignment at scaffold_273:179682..183002+ (Clytia hemisphaerica)
AGAGAGCAGTGTCGATCATTTTTGGAACTATATGAGGTAGATTGGACAGC
CTTTTCAGTGAACGCGCAGGCCGTCTACGAGGATCGAAGTGCAAATGCGC
CTCAGAATTTACCATTGGAAAGCGATGTCAAGTTGTTCAAACAGTATTGC
GTTGACGAAAtcacaaaaatgttgaaatatgaTTCCTTCTCAAAAGATGA
CTACTCGTTGCTTTCCAATCTCACACTTGCAAGGCTGATGACCTTCAATG
CAAGGAGAGGCTCAGAGGTTGCAAGGTTAAAATTGGATCGTTGGGAGGGG
GTTATGGACGACCGTTGGAAAAAAAAGGAGTACATCGATCTCATCGATGA
CGATGTTGAGCGTAAACTGGCCGAGAAATTGAAACTTTGTTATATCGagg
ggaaaaagaaaaagaggtcgaagaaaaagaagaaccaCGTTCCGATACTT
TTCCCTGAAGAATGTGTGGAGGCAATTCAACGTCTAGTCTCTTTCAGGGA
TAAATTTGTAGACGAAGAAAATGAGTATGTTTTTCACTCCGGCGAGCTCT
ACATTAAAGGTTGGAACGCTTTGCAAACCGTGGCAAAGGAAATTGGCGAT
CGTTTGACATCGCCAAAGTTACTTACGCCAACTAGGACAAGAAAATTCCT
AGCCACTATCTTACAACTGATGCAGCTCAATGACGCAGAGCTGGGCTGGA
TGACGACTCACATGGGACATACGAAAGATGTCCACCTCGGCTTCTACCGT
CAGGAGGATTCTACGATTGAGCTGACAAAAGTGGCTAAGgTGTTATGTGC
GGTGGATCAAGGGGCAGAGTTGAAGAACAAAAAGATTGACGATCTCCTAA
CGGAAAACAATGTTGAAGAGAGCAGGACTGAAGACGCTGAAGACAACGAT
ATTCAGCAGCAACGAGAAGACCCTAAGaaAACTAAGAAGACGTGGAAAAA
ATGGACGAAAGCCGAAACAGAAGCATTACATAAAGCATTCCAACACCATG
TGAAATCAAAAGTCAAACCAATGCAACATGAAGTCCTAAATGCATTGAAT
AGGTACCCAGTACTGAAGGAGCGGGGAGCAgacaaagtgaaaaataaaat
aagtaaaactatagatattttgaagaaaaaaagttcggACTAAAGAGAGC
AGTGTCGATCATTTTTGGAACTATATGAGGTAGATTGGACAGCCTTTTCA
GTGAACGCGCAGGCCGTCTACGAGGATCGAAGTGCAAATGCGCCTCAGAA
TTTACCATTGGAAAGCGATGTCAAGTTGTTCAAACAGTATTGCGTTGACG
AAAtcacaaaaatgttgaaatatgaTTCCTTCTCAAAAGATGACTACTCG
TTGCTTTCCAATCTCACACTTGCAAGGCTGATGACCTTCAATGCAAGGAG
AGGCTCAGAGGTTGCAAGGTTAAAATTGGATCGTTGGGAGGGGGTTATGG
ACGACCGTTGGAAAAAAAAGGAGTACATCGATCTCATCGATGACGATGTT
GAGCGTAAACTGGCCGAGAAATTGAAACTTTGTTATATCGaggggaaaaa
gaaaaagaggtcgaagaaaaagaagaaccaCGTTCCGATACTTTTCCCTG
AAGAATGTGTGGAGGCAATTCAACGTCTAGTCTCTTTCAGGGATAAATTT
GTAGACGAAGAAAATGAGTATGTTTTTCACTCCGGCGAGCTCTACATTAA
AGGTTGGAACGCTTTGCAAACCGTGGCAAAGGAAATTGGCGATCGTTTGA
CATCGCCAAAGTTACTTACGCCAACTAGGACAAGAAAATTCCTAGCCACT
ATCTTACAACTGATGCAGCTCAATGACGCAGAGCTGGGCTGGATGACGAC
TCACATGGGACATACGAAAGATGTCCACCTCGGCTTCTACCGTCAGGAGG
ATTCTACGATTGAGCTGACAAAAGTGGCTAAGgTGTTATGTGCGGTGGAT
CAAGGGGCAGAGTTGAAGAACAAAAAGATTGACGATCTCCTAACGGAAAA
CAATGTTGAAGAGAGCAGGACTGAAGACGCTGAAGACAACGATATTCAGC
AGCAACGAGAAGACCCTAAGaaAACTAAGAAGACGTGGAAAAAATGGACG
AAAGCCGAAACAGAAGCATTACATAAAGCATTCCAACACCATGTGAAATC
AAAAGTCAAACCAATGCAACATGAAGTCCTAAATGCATTGAATAGGTACC
CAGTACTGAAGGAGCGGGGAGCAgacaaagtgaaaaataaaataagtaaa
actatagatattttgaagaaaaaaagttcggACTAAAGAGAGCAGTGTCG
ATCATTTTTGGAACTATATGAGGTAGATTGGACAGCCTTTTCAGTGAACG
CGCAGGCCGTCTACGAGGATCGAAGTGCAAATGCGCCTCAGAATTTACCA
TTGGAAAGCGATGTCAAGTTGTTCAAACAGTATTGCGTTGACGAAAtcac
aaaaatgttgaaatatgaTTCCTTCTCAAAAGATGACTACTCGTTGCTTT
CCAATCTCACACTTGCAAGGCTGATGACCTTCAATGCAAGGAGAGGCTCA
GAGGTTGCAAGGTTAAAATTGGATCGTTGGGAGGGGGTTATGGACGACCG
TTGGAAAAAAAAGGAGTACATCGATCTCATCGATGACGATGTTGAGCGTA
AACTGGCCGAGAAATTGAAACTTTGTTATATCGaggggaaaaagaaaaag
aggtcgaagaaaaagaagaaccaCGTTCCGATACTTTTCCCTGAAGAATG
TGTGGAGGCAATTCAACGTCTAGTCTCTTTCAGGGATAAATTTGTAGACG
AAGAAAATGAGTATGTTTTTCACTCCGGCGAGCTCTACATTAAAGGTTGG
AACGCTTTGCAAACCGTGGCAAAGGAAATTGGCGATCGTTTGACATCGCC
AAAGTTACTTACGCCAACTAGGACAAGAAAATTCCTAGCCACTATCTTAC
AACTGATGCAGCTCAATGACGCAGAGCTGGGCTGGATGACGACTCACATG
GGACATACGAAAGATGTCCACCTCGGCTTCTACCGTCAGGAGGATTCTAC
GATTGAGCTGACAAAAGTGGCTAAGgTGTTATGTGCGGTGGATCAAGGGG
CAGAGTTGAAGAACAAAAAGATTGACGATCTCCTAACGGAAAACAATGTT
GAAGAGAGCAGGACTGAAGACGCTGAAGACAACGATATTCAGCAGCAACG
AGAAGACCCTAAGaaAACTAAGAAGACGTGGAAAAAATGGACGAAAGCCG
AAACAGAAGCATTACATAAAGCATTCCAACACCATGTGAAATCAAAAGTC
AAACCAATGCAACATGAAGTCCTAAATGCATTGAATAGGTACCCAGTACT
GAAGGAGCGGGGAGCAgacaaagtgaaaaataaaataagtaaaactatag
atattttgaagaaaaaaagttcggACTAAAGAGAGCAGTGTCGATCATTT
TTGGAACTATATGAGGTAGATTGGACAGCCTTTTCAGTGAACGCGCAGGC
CGTCTACGAGGATCGAAGTGCAAATGCGCCTCAGAATTTACCATTGGAAA
GCGATGTCAAGTTGTTCAAACAGTATTGCGTTGACGAAAtcacaaaaatg
ttgaaatatgaTTCCTTCTCAAAAGATGACTACTCGTTGCTTTCCAATCT
CACACTTGCAAGGCTGATGACCTTCAATGCAAGGAGAGGCTCAGAGGTTG
CAAGGTTAAAATTGGATCGTTGGGAGGGGGTTATGGACGACCGTTGGAAA
AAAAAGGAGTACATCGATCTCATCGATGACGATGTTGAGCGTAAACTGGC
CGAGAAATTGAAACTTTGTTATATCGaggggaaaaagaaaaagaggtcga
agaaaaagaagaaccaCGTTCCGATACTTTTCCCTGAAGAATGTGTGGAG
GCAATTCAACGTCTAGTCTCTTTCAGGGATAAATTTGTAGACGAAGAAAA
TGAGTATGTTTTTCACTCCGGCGAGCTCTACATTAAAGGTTGGAACGCTT
TGCAAACCGTGGCAAAGGAAATTGGCGATCGTTTGACATCGCCAAAGTTA
CTTACGCCAACTAGGACAAGAAAATTCCTAGCCACTATCTTACAACTGAT
GCAGCTCAATGACGCAGAGCTGGGCTGGATGACGACTCACATGGGACATA
CGAAAGATGTCCACCTCGGCTTCTACCGTCAGGAGGATTCTACGATTGAG
CTGACAAAAGTGGCTAAGgTGTTATGTGCGGTGGATCAAGGGGCAGAGTT
GAAGAACAAAAAGATTGACGATCTCCTAACGGAAAACAATGTTGAAGAGA
GCAGGACTGAAGACGCTGAAGACAACGATATTCAGCAGCAACGAGAAGAC
CCTAAGaaAACTAAGAAGACGTGGAAAAAATGGACGAAAGCCGAAACAGA
AGCATTACATAAAGCATTCCAACACCATGTGAAATCAAAAGTCAAACCAA
TGCAACATGAAGTCCTAAATGCATTGAATAGGTACCCAGTACTGAAGGAG
CGGGGAGCAgacaaagtgaaaaataaaataagtaaaactatagatatttt
gaagaaaaaaagttcggACTAAAGAGAGCAGTGTCGATCATTTTTGGAAC
TATATGAGGTAGATTGGACAGCCTTTTCAGTGAACGCGCAGGCCGTCTAC
GAGGATCGAAGTGCAAATGCGCCTCAGAATTTACCATTGGAAAGCGATGT
CAAGTTGTTCAAACAGTATTGCGTTGACGAAAtcacaaaaatgttgaaat
atgaTTCCTTCTCAAAAGATGACTACTCGTTGCTTTCCAATCTCACACTT
GCAAGGCTGATGACCTTCAATGCAAGGAGAGGCTCAGAGGTTGCAAGGTT
AAAATTGGATCGTTGGGAGGGGGTTATGGACGACCGTTGGAAAAAAAAGG
AGTACATCGATCTCATCGATGACGATGTTGAGCGTAAACTGGCCGAGAAA
TTGAAACTTTGTTATATCGaggggaaaaagaaaaagaggtcgaagaaaaa
gaagaaccaCGTTCCGATACTTTTCCCTGAAGAATGTGTGGAGGCAATTC
AACGTCTAGTCTCTTTCAGGGATAAATTTGTAGACGAAGAAAATGAGTAT
GTTTTTCACTCCGGCGAGCTCTACATTAAAGGTTGGAACGCTTTGCAAAC
CGTGGCAAAGGAAATTGGCGATCGTTTGACATCGCCAAAGTTACTTACGC
CAACTAGGACAAGAAAATTCCTAGCCACTATCTTACAACTGATGCAGCTC
AATGACGCAGAGCTGGGCTGGATGACGACTCACATGGGACATACGAAAGA
TGTCCACCTCGGCTTCTACCGTCAGGAGGATTCTACGATTGAGCTGACAA
AAGTGGCTAAGgTGTTATGTGCGGTGGATCAAGGGGCAGAGTTGAAGAAC
AAAAAGATTGACGATCTCCTAACGGAAAACAATGTTGAAGAGAGCAGGAC
TGAAGACGCTGAAGACAACGATATTCAGCAGCAACGAGAAGACCCTAAGa
aAACTAAGAAGACGTGGAAAAAATGGACGAAAGCCGAAACAGAAGCATTA
CATAAAGCATTCCAACACCATGTGAAATCAAAAGTCAAACCAATGCAACA
TGAAGTCCTAAATGCATTGAATAGGTACCCAGTACTGAAGGAGCGGGGAG
CAgacaaagtgaaaaataaaataagtaaaactatagatattttgaagaaa
aaaagttcggACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035503XLOC_035503Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056351-proteinTCONS_00056351-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056351-exon-scaffold_273-1491911889:179682..179940TCONS_00056351-exon-scaffold_273-1491911889:179682..179940Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1510915933:179682..179940TCONS_00056351-exon-scaffold_273-1510915933:179682..179940Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1575043694:179682..179940TCONS_00056351-exon-scaffold_273-1575043694:179682..179940Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1491911889:180698..181227TCONS_00056351-exon-scaffold_273-1491911889:180698..181227Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1510915933:180698..181227TCONS_00056351-exon-scaffold_273-1510915933:180698..181227Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1575043694:180698..181227TCONS_00056351-exon-scaffold_273-1575043694:180698..181227Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1491911889:181446..181509TCONS_00056351-exon-scaffold_273-1491911889:181446..181509Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1510915933:181446..181509TCONS_00056351-exon-scaffold_273-1510915933:181446..181509Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1575043694:181446..181509TCONS_00056351-exon-scaffold_273-1575043694:181446..181509Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1491911889:182110..182183TCONS_00056351-exon-scaffold_273-1491911889:182110..182183Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1510915933:182110..182183TCONS_00056351-exon-scaffold_273-1510915933:182110..182183Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1575043694:182110..182183TCONS_00056351-exon-scaffold_273-1575043694:182110..182183Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1491911889:182744..183002TCONS_00056351-exon-scaffold_273-1491911889:182744..183002Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1510915933:182744..183002TCONS_00056351-exon-scaffold_273-1510915933:182744..183002Clytia hemisphaericaexon
TCONS_00056351-exon-scaffold_273-1575043694:182744..183002TCONS_00056351-exon-scaffold_273-1575043694:182744..183002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:179682..183002 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.11875	0.399517	0.720569	1.00963	0.358534	0.56069	0.578898	0.81495	0.617257	0.592607	0.0206197	0.177025	0.02726	0.111762	0	0	0	0	0	0	0.725638	1.11167	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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