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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056332 ID=TCONS_00056332|Name=TCONS_00056332|organism=Clytia hemisphaerica|type=transcript|length=3719bpRun BLAST on NCBI transcript from alignment at scaffold_272:244288..262314- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056332 ID=TCONS_00056332|Name=TCONS_00056332|organism=Clytia hemisphaerica|type=transcript|length=18027bp|location=Sequence derived from alignment at scaffold_272:244288..262314- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056332 vs. Swiss-Prot (Human)
Match: NCLX (Mitochondrial sodium/calcium exchanger protein OS=Homo sapiens GN=SLC8B1 PE=1 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 7.983e-44 Identity = 94/243 (38.68%), Postives = 138/243 (56.79%), Query Frame = 3
Query: 798 SDLVYTNNDSVTMKDFVRPMNIVERLTG---IRKVN------WQNQSKLSKAFSIIQVPIIFMLSITCPVVDRDVQGQKWDKWLSIWHCFASPIFVVFALQVGTVSVYND---FLVYHLVLVIGSILGCLLYFISSSDYTPKFHVIFALFGFAVAVVWIKCTAQEVVNLLQTFGWISHLSYGIMGLTLLAWGNSIGDFISNLTMARNGAPRMAIAACYGGPLLNMLLGVGISCTISAIRDGGE 1490
D V +N +S D RP+ + T +R +N W+ +S KA + ++P+ F+L +T PVVD D Q W + L+ H SP+ VV LQ GT VY V+ +V++ G+ L + +F +S P+ H +FA GF + +WI A EVVN+L++ G + LS ++GLTLLAWGNSIGD S+ T+AR G PRMA +AC+GG + N+L+GVG+ C + R E
Sbjct: 275 EDRVSSNTNSYDYGDEYRPLFFYQETTAQILVRALNPLDYMKWRRKSAYWKALKVFKLPVEFLLLLTVPVVDPDKDDQNWKRPLNCLHLVISPLVVVLTLQSGTYGVYEIGGLVPVWVVVVIAGTALASVTFFATSDSQPPRLHWLFAFLGFLTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGCLLQISRSHTE 517 HSP 2 Score: 111.694 bits (278), Expect = 4.250e-25 Identity = 60/138 (43.48%), Postives = 82/138 (59.42%), Query Frame = 3
Query: 3 GVTLLALGNGAPDIFSVIAAVNNKNPRTTAMAFQELFGAGIFVTTIVAGSINFSTTFMMARRPFLRDNIFYLVAVIWTFVVIYRREIKTIEATGFIALYVLYVSIVIIGQIVNRFLRRRTLSQSRERLMTVASTDDEN 416
GVT LA GNGAPDIFS + A ++ P T +A LFGAG+ VTT+VAG I FM A RPF RD +FY+VAV TF++++R + A G++ LYV YV VI+ + + RR +L + S +E+
Sbjct: 141 GVTFLAFGNGAPDIFSALVAFSD--PHTAGLALGALFGAGVLVTTVVAGGITILHPFMAASRPFFRDIVFYMVAVFLTFLMLFRGRVTLAWALGYLGLYVFYVVTVILCTWIYQRQRRGSLFCPMPVTPEILSDSEED 276 The following BLAST results are available for this feature:
BLAST of TCONS_00056332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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