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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056314 ID=TCONS_00056314|Name=TCONS_00056314|organism=Clytia hemisphaerica|type=transcript|length=2300bp
aaaagatgtagaaaaagaatccccttgatgaaaatcatgtgtttgatttg
ccgagttaaaaaataaatgacagaaattgaagcttgcaacagatttacac
tcaGTTACACTGGAAAtgctttggtacaacactgacttatcacatctgac
ttatcacATTTCGCTAAATGCTCAGAGCGCGACGGcccattttccctttc
ctatctttcaccttacctgtttattctactttctgagacttagtttctct
cTGAGCAATCAGCGaaatctgacttatcgcttgagccgccatcttgaaac
accacattatgatctgtaaaaacgacgctaaaagtacccaaaaagttaac
ccaatcggaagaaagtttagaaatcaaagtgagatcgggaaatcggattt
ttttttttgccgtctcatggaactggaaaattttacctatttgaatgctc
agcttaggctgaccaaaaacttttacttttaATTTGTCCTATCTACTTTA
ACAGTTCATCTTTTTGGCCATTGCTTATATGTATTAGATCTTTACCTTTT
AGCTTCAAGAACAAGTCACGCGTCTGGGTGACATCAACGAGCGTTTACGA
TCCGATTCGAGTGTCTTATCGAACGAATCTATAACATCCAGCGAATCGAT
TCACAACGAGAAGGCTGATCTTAACACTTCGACTGCATCTCTATTAGATG
AACTACGAATGGAGGATGCGAATTATAACGAATATGAAGAGGAAGAAACT
ATGGAAAATTCGAGTTTCGCAGTCTTAACAACGTCTATATGTCTAACAAG
TGATGAAACGAACGATACGCCCGACAAACAAGATGCACCCTCGGAGCGAC
CGCCCGTCAAGAAGGATCCAGACCGACCGAGATACACGTTAAAAGAAATG
CAGAGTTTACTTGAGGAGAGGAACAcgtataaaatcaaaatgatgGCCCT
CGAAGAAGAGCTAGAACTTTATAAGGACGGTGGGCCGAACTTTTTGAAAG
CGACACAATCCGCACCAGCCAACGTCAACGATCCCCAAAAGAAGAATTCT
GGTGTTAGAACGTTtaTGCAGAAATTTCTTGGGAAGTAATCTGTGAAAAC
CCTGGACGTAACCGGTCTCCAttctttagtttgttttttatttatatgaA
AATATAGTTGAATTTATATAATTAtagaaaaagaaaggatttattttgaa
aagcaAGAGAAACGTTTTAATTTGAgttatgaaaaaattatttctaaagt
ttttttatcattgaaaattatttttattaatttttttttttacgttgaat
atttttttaaaattaaattcagTTTGTTTGTTAAGTTTGAAATGTTTGAA
ATGTTATTTTATGAATGCTCTATGAAGTGAATATCTTTTTCCACTATAAT
ACTTCGACAACTTCGAGCTGGTGTTCAACCACTGCATAACTATTTGCTCC
TTTCCCAATGTCTTTCTCACAACCCTTAAACGGGCAAAACCTTTCGTTGG
GTAACATTTTTAACTCTAAGAAAGTCTCTTGAAGTTGACAAGAAAGGAAA
GATTTGCctaaaaattccgtcactttccCCGACTAAATATTTCACTTTCA
TGACACTTTTGCACATGGAGAATACATTGAAAAGTACTTGGTAACGTAAT
ATAATCTTCCTTGCATCTAGTCTACACGAGGATGAATAATATATCTCTAA
TATTTGTTTCAatatactttaagggcagaaactttcgcgggcagaaactt
tcacgtttttcgcggttttgatcctttttcgcgaagaaagtttctgccag
gtaagaaattaaacctgaaaaGCGCGAAAGTTCTTTTCgcaaaaaataaa
ctttcctactcaggtttgcactgtttgctaaatttttgcgtgttttatga
gtttttgttaccaaaaagggtaaattttatatgaatttgCGAAAGTTCTT
TCTAAGAAATTTCGGCTAAAACCATaattcgcgaaacttaaattcgCAAT
ATCTCGCCATTTTTTTAacttcgcgaaactttctgcccgcgaaactttct
gcccttaacaatatattatttcattattatattattgacgaatttttaaa
gaatataacatttttttgtaattcaTAAATACTCCCATTGTTGCTTAGCA
TTCAAATACACAATTCGGAAGAAATTCTATTCAAGTTGTGTTGTACGAGT
ATtaaagttgactctctctaattcgaggtTCAAGGACCAAAAGTTTTCTT
ctaattagagaaagattcgaattacagagagtaatttaaaccattTCCAG Run BLAST on NCBI protein sequence of TCONS_00056314-protein >TCONS_00056314-protein ID=TCONS_00056314-protein|Name=TCONS_00056314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MEDANYNEYEEEETMENSSFAVLTTSICLTSDETNDTPDKQDAPSERPPV
KKDPDRPRYTLKEMQSLLEERNTYKIKMMALEEELELYKDGGPNFLKATQ
SAPANVNDPQKKNSGVRTFMQKFLGK Run BLAST on NCBI transcript from alignment at scaffold_272:177555..181041+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056314 ID=TCONS_00056314|Name=TCONS_00056314|organism=Clytia hemisphaerica|type=transcript|length=3487bp|location=Sequence derived from alignment at scaffold_272:177555..181041+ (Clytia hemisphaerica)
aaaagatgtagaaaaagaatccccttgatgaaaatcatgtgtttgatttg
ccgagttaaaaaataaatgacagaaattgaagcttgcaacagatttacac
tcaGTTACACTGGAAAtgctttggtacaacactgacttatcacatctgac
ttatcacATTTCGCTAAATGCTCAGAGCGCGACGGcccattttccctttc
ctatctttcaccttacctgtttattctactttctgagacttagtttctct
cTGAGCAATCAGCGaaatctgacttatcgcttgagccgccatcttgaaac
accacattatgatctgtaaaaacgacgctaaaagtacccaaaaagttaac
ccaatcggaagaaagtttagaaatcaaagtgagatcgggaaatcggattt
ttttttttgccgtctcatggaactggaaaattttacctatttgaatgctc
agcttaggctgaccaaaaacttttacttttaATTTGTCCTATCTACTTTA
ACAGTTCATCTTTTTGGCCATTGCTTATATGTATTAGATCTTTACCTTTT
AGCTTCAAGAACAAGTCACGCGTCTGGGTGACATCAACGAGCGTTTACGA
TCCGATTCGAGTGTCTTATCGAACGAATCTATAACATCCAGCGAATCGAT
TCACAACGAGAAGGCTGATCTTAACACTTCGACTGCATCTCTATTAGATG
AACTACGAATGGAGGATGCGAATTATAACGAATATGAAGAGGAAGAAACT
ATGGAAAATTCGAGTTTCGCAGTCTTAACAACGTCTATATGTCTAACAAG
TGATGAAACGAACGATACGCCCGACAAACAAGATGCACCCTCGGAGCGAC
CGCCCGTCAAGAAGGATCCAGACCGACCGAGATACACGTTAAAAGAAATG
CAGAGTTTACTTGAGGAGAGGAACAcgtataaaatcaaaatgatgGCCCT
CGAAGAAGAGCTAGAACTTTATAAGGACGGGTAAGACCCTTTTTTACATT
TACTTTTTACGGGCTGGAAGTTTCGCGTGGTCAAAATTATTGGCCCCGTA
GTTCTGCTTATTTTTTAGCGAGTACCTCACAAAAATGGGGGATTTTTTAT
TTCCTTACACTTTGATGGTTTTAGGAAAAAGAGGGCTTCGAAAGTCGAAT
GTCTGGAGCCCGAAAATCTGGCAGTAacgaaaaatcccggtttttggtaa
GGTGCTCGCTAGAAAACCTGTAGGAATCGAGAGTGGAGGTGACCCATGta
tcatttgataacacatgTGAAAGCTTTTCAATCGGGTATCAACTCTCCAA
TCGTGTTTGAAGTTTTCCTGTATTTCCATTTTTATTTAGTGGGCCGAACT
TTTTGAAAGCGACACAATCCGCACCAGCCAACGTCAACGATCCCCAAAAG
AAGAATTCTGGTGTTAGAACGTTGTAAGTAGTTGTTCTTTGGCTGTCCAA
TTCTTTCCGTCCCTGCCTTAGCCAAAGAATTTAAATCTTCGTACAAATTT
GTACAGCTTTTCCCAAAGAAAATTGTAATCTTATTTCAACTATTCTAAGC
CGAGTCAAAATACTGAGTTTTGAGGAATTTActttataaattaaaatttg
ctggttttttttgggacaccctTTATTTCTTTGGTTGTCTCCCTGTCGTA
GTTTTGGTTTCAACAACTCCATCTTTAAATatattaaggccggtctccac
ttgcgcgcgctgcgatcgcactttttggtttcaatactttttgcttggaa
aaaagatcatgtcataaaaatgtagcgcgcgcttgtaaaaaatgttgaac
acatttcaacttttttaaccgttacgtcagatcgcgccaatggagttgct
taatttttcttttgaccaatagtgTGGAAGCTTttctcgaaaaagtgcga
tcgaagcgcgcgcaagtgtaGACCGGCCTTTAGGGGATCTTTGAAATGTA
CGCTTTGATATACGAATAATCTTTTTAGAACAAGACTCGTGCCTCAGATG
TGTGGCTTTCAGGAGGTCCCCCAAAATGTAGCTCTTAACATTAACACTAA
TCCTTACGTTAACTTGTTTAATtatctaccttatcggggaaaacttcgtc
gggaaaaagtaacgaaattttggccttaatgcgtttaccaactaccagca
agtgacgaatattttttcccgacgaagttttccccgataaggtatttacT
CATGCTTTTCAACTGTTATCGATTCATTAATcgactttttctatttttta
gtaTGCAGAAATTTCTTGGGAAGTAATCTGTGAAAACCCTGGACGTAACC
GGTCTCCAttctttagtttgttttttatttatatgaAAATATAGTTGAAT
TTATATAATTAtagaaaaagaaaggatttattttgaaaagcaAGAGAAAC
GTTTTAATTTGAgttatgaaaaaattatttctaaagtttttttatcattg
aaaattatttttattaatttttttttttacgttgaatatttttttaaaat
taaattcagTTTGTTTGTTAAGTTTGAAATGTTTGAAATGTTATTTTATG
AATGCTCTATGAAGTGAATATCTTTTTCCACTATAATACTTCGACAACTT
CGAGCTGGTGTTCAACCACTGCATAACTATTTGCTCCTTTCCCAATGTCT
TTCTCACAACCCTTAAACGGGCAAAACCTTTCGTTGGGTAACATTTTTAA
CTCTAAGAAAGTCTCTTGAAGTTGACAAGAAAGGAAAGATTTGCctaaaa
attccgtcactttccCCGACTAAATATTTCACTTTCATGACACTTTTGCA
CATGGAGAATACATTGAAAAGTACTTGGTAACGTAATATAATCTTCCTTG
CATCTAGTCTACACGAGGATGAATAATATATCTCTAATATTTGTTTCAat
atactttaagggcagaaactttcgcgggcagaaactttcacgtttttcgc
ggttttgatcctttttcgcgaagaaagtttctgccaggtaagaaattaaa
cctgaaaaGCGCGAAAGTTCTTTTCgcaaaaaataaactttcctactcag
gtttgcactgtttgctaaatttttgcgtgttttatgagtttttgttacca
aaaagggtaaattttatatgaatttgCGAAAGTTCTTTCTAAGAAATTTC
GGCTAAAACCATaattcgcgaaacttaaattcgCAATATCTCGCCATTTT
TTTAacttcgcgaaactttctgcccgcgaaactttctgcccttaacaata
tattatttcattattatattattgacgaatttttaaagaatataacattt
ttttgtaattcaTAAATACTCCCATTGTTGCTTAGCATTCAAATACACAA
TTCGGAAGAAATTCTATTCAAGTTGTGTTGTACGAGTATtaaagttgact
ctctctaattcgaggtTCAAGGACCAAAAGTTTTCTTctaattagagaaa
gattcgaattacagagagtaatttaaaccattTCCAG Coding sequence (CDS) from alignment at scaffold_272:177555..181041+ >TCONS_00056314 ID=TCONS_00056314|Name=TCONS_00056314|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_272:177555..181041+ (Clytia hemisphaerica)
ATGGAGGATGCGAATTATAACGAATATGAAGAGGAAGAAACTATGGAAAA
TTCGAGTTTCGCAGTCTTAACAACGTCTATATGTCTAACAAGTGATGAAA
CGAACGATACGCCCGACAAACAAGATGCACCCTCGGAGCGACCGCCCGTC
AAGAAGGATCCAGACCGACCGAGATACACGTTAAAAGAAATGCAGAGTTT
ACTTGAGGAGAGGAACAcgtataaaatcaaaatgatgGCCCTCGAAGAAG
AGCTAGAACTTTATAAGGACGGTGGGCCGAACTTTTTGAAAGCGACACAA
TCCGCACCAGCCAACGTCAACGATCCCCAAAAGAAGAATTCTGGTGTTAG
AACGTTtaTGCAGAAATTTCTTGGGAAGTAAATGGAGGATGCGAATTATA
ACGAATATGAAGAGGAAGAAACTATGGAAAATTCGAGTTTCGCAGTCTTA
ACAACGTCTATATGTCTAACAAGTGATGAAACGAACGATACGCCCGACAA
ACAAGATGCACCCTCGGAGCGACCGCCCGTCAAGAAGGATCCAGACCGAC
CGAGATACACGTTAAAAGAAATGCAGAGTTTACTTGAGGAGAGGAACAcg
tataaaatcaaaatgatgGCCCTCGAAGAAGAGCTAGAACTTTATAAGGA
CGGTGGGCCGAACTTTTTGAAAGCGACACAATCCGCACCAGCCAACGTCA
ACGATCCCCAAAAGAAGAATTCTGGTGTTAGAACGTTtaTGCAGAAATTT
CTTGGGAAGTAAATGGAGGATGCGAATTATAACGAATATGAAGAGGAAGA
AACTATGGAAAATTCGAGTTTCGCAGTCTTAACAACGTCTATATGTCTAA
CAAGTGATGAAACGAACGATACGCCCGACAAACAAGATGCACCCTCGGAG
CGACCGCCCGTCAAGAAGGATCCAGACCGACCGAGATACACGTTAAAAGA
AATGCAGAGTTTACTTGAGGAGAGGAACAcgtataaaatcaaaatgatgG
CCCTCGAAGAAGAGCTAGAACTTTATAAGGACGGTGGGCCGAACTTTTTG
AAAGCGACACAATCCGCACCAGCCAACGTCAACGATCCCCAAAAGAAGAA
TTCTGGTGTTAGAACGTTtaTGCAGAAATTTCTTGGGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056314-exon-scaffold_272-1491911889:177555..178534 | TCONS_00056314-exon-scaffold_272-1491911889:177555..178534 | Clytia hemisphaerica | exon |
| TCONS_00056314-exon-scaffold_272-1510915933:177555..178534 | TCONS_00056314-exon-scaffold_272-1510915933:177555..178534 | Clytia hemisphaerica | exon |
| TCONS_00056314-exon-scaffold_272-1575043694:177555..178534 | TCONS_00056314-exon-scaffold_272-1575043694:177555..178534 | Clytia hemisphaerica | exon |
| TCONS_00056314-exon-scaffold_272-1491911889:178894..178977 | TCONS_00056314-exon-scaffold_272-1491911889:178894..178977 | Clytia hemisphaerica | exon |
| TCONS_00056314-exon-scaffold_272-1510915933:178894..178977 | TCONS_00056314-exon-scaffold_272-1510915933:178894..178977 | Clytia hemisphaerica | exon |
| TCONS_00056314-exon-scaffold_272-1575043694:178894..178977 | TCONS_00056314-exon-scaffold_272-1575043694:178894..178977 | Clytia hemisphaerica | exon |
| TCONS_00056314-exon-scaffold_272-1491911889:179806..181041 | TCONS_00056314-exon-scaffold_272-1491911889:179806..181041 | Clytia hemisphaerica | exon |
| TCONS_00056314-exon-scaffold_272-1510915933:179806..181041 | TCONS_00056314-exon-scaffold_272-1510915933:179806..181041 | Clytia hemisphaerica | exon |
| TCONS_00056314-exon-scaffold_272-1575043694:179806..181041 | TCONS_00056314-exon-scaffold_272-1575043694:179806..181041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:177555..181041 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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