TCONS_00056307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056307
Unique NameTCONS_00056307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056307 ID=TCONS_00056307|Name=TCONS_00056307|organism=Clytia hemisphaerica|type=transcript|length=1283bp
GCGAAAGCGTGGGGACAGGCAGCGAGGTCTCTTTGGAAAGTGCATGGCTT
GGTGATAGATCTACAGTTGTTATTTTTGAGATATCAACTCAAAATAATCA
CTCTTTTGACAAGAATGTAATGGATATAATGAAAAGATGGAATTCATATC
CCTTGGAATTTGCAAGACTGTGAGAAATGTGGGCAGTGTTAGCTGAGCAA
ACTGGAATATTTTTAAAGAGGAAAGACCAGCTGCTTCAAGATGTATTTCG
GTTCCGTAAAATCCCAAAAGACACACTATCACCGGAACGTAATGGCACAG
TTCTGTTAGTTGTCGGAGCTAAGAAAGGCTGGAAGCAAACATAATAGCAT
AATGAAGCATAATGAAACTTTAAATAGTAGATGTGGAAACCTTTAATTGA
GTCTCTGTCCATGGATTCAAGTGTTCGTTCCTCCTTAAAACCTCTGTCAC
CAAGTGGGATCTTCAATTCATCATTGGTTATGAGGCAGAAGAGACAAGGG
TATTTTCCTGGAAACGAAAAAGGAAACAAGAATGGGGCTTGCTCGACCGT
GTAGTCTTCGCCACGCCACAATTGAGCAACCAAACGTTGTTTGCCTTGGG
ATGCCATGACAATGTTTGCTGCCTTCAACCATctacaaagaaagaaaatg
gcTTGTCAATGATTTGAACCTGGATATAATCAGACAATGAAGATACAAGT
TATCAGACATTTTGGTCCAGCTGCTTGCTAATAATATCGATATANTCAAT
GATGTGAACCTGGATATAATCAGACAATGAAGATACAAGTTATCAGACAT
TTTGGTCCAGCTGCTTGCTAATAATATCGATATATAGACTATGTATATAG
ACTATTCTCACCTTGCCATGATTTTAATCTTCTCCCAGGGAAGGCATAGG
TCAGATTTCATGGCAACAACAACCTCTGCGTCCAAACACGCCACACAAAT
ATTTCCTTTCTTGAGGATCTCGAGTCTATCTTCTTCACTGAACGTTTTCA
GTATATGCCCCATTTGCGAAAGAATTGAATTCGAACCAGAACCAGAGACG
TAGTCAATTTGACTTTTCAGAAATTGCGATCTCGCTTGAACAGTCCTTTT
TGAGGCCGAATCTGTGTCTTTGATAGGTTGGGGTGTTGGCGTCATAACCA
ATGGCTAAGAAATAATTAAGGAATCTGAATGTAAATAGAgctattatatt
tttgtaaaataacaGACAATTTCTGACCTGAATAGAGTTGTTTTTAGAAT
TTACTTTAAGTATGACAGTGCTTTATTGATGGC
Run BLAST on NCBI

transcript from alignment at scaffold_272:84566..90725+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056307 ID=TCONS_00056307|Name=TCONS_00056307|organism=Clytia hemisphaerica|type=transcript|length=6160bp|location=Sequence derived from alignment at scaffold_272:84566..90725+ (Clytia hemisphaerica)
GCGAAAGCGTGGGGACAGGCAGCGAGGTCTCTTTGGAAAGTGCATGGCTT
GGTGATAGATCTACAGTTGTTATTTTTGAGATATCAACTCAAAATAATCA
CTCTTTTGACAAGAATGTAATGGATATAATGAAAAGATGGAATTCATATC
CCTTGGAATTTGCAAGACTGTGAGAAATGTGGGCAGTGTTAGCTGAGCAA
ACTGGAATATTTTTAAAGAGGAAAGACCAGGTAAGCATTTGTAAAAGATT
TCATcctttcttcagtttttttcaTGAAGTTATTGAGATTTGTATTTGAC
GGAAAAATggagaattttcattttatcgCAGTGGTTTTCCTTTGATTTCC
CAACAGAAAAAAGGAACCTTAGAGTCCAACACACAAAGCCATCTTGTATT
TATATTTCATTTCTCATGTGTGTAGTATTATTATCTAACCCTAAATGGAA
TTTTGAGCTTATTTTCATGTATATTAGGATGAGTGACATTGCGAAAGTCT
GCCCTCAACCTCTTCGCATAATGCTGTTCGTAAAGGAATTTTCAGTTCCC
TTCTTTCCAGTCAACTTAGTCTAAAATTGGGAAAGAATATTTCCTGTTTA
TCGCTAAACATAACGTCATTCAAAAGATGTATCCACCTTGTTTCAAAAGG
TTTTGAGAGATAATCCTGTTTTGCCTGTGTTTCTGTAGGGAAGGTGAGTT
TTTGTTTTATATCcgtatttgtaaaaaaaatccgGTTGGTCAGTATTAAA
TATTGTCAGATTTTTAAGATTCATGAAATGGCGACAGATCAAGTCAGCAA
GCTTTGCCGCCGTCATCTTTAATTTGCAACTGAAATGTACGGGTGCATGC
GTTTACCCTTTAGCATGGACGCAATACTGTAGGGGTTTTGGCTCCCCACT
GCGTTGCAGAATTGCCATGAAAACAAACGACTtacgggactcaatgtggg
taaagtaaacaaaaacttttataaaaagaaaggtgTTTCTAGTTCTAgat
atgaaaaaattttccgactTGGGATTATGGTTTAAAGATGAGTCAGTCAG
TTGACGCGAACAGGACATATTATTTTGATGGTCGCCTTATGGAAAGTAGA
AACAATGATAGTTTGTAATTCCAACATACCATGTTGAATTTCCTCATAGT
AACAATCTGgtctttttaatgtttttcatcCAAAAGCATAACCTTCTGAG
AAAGCTATTACAAAAGATTAGTTTTAactactttacagaccagaaggTTG
CTATTTCAGAATTCAACATGGCATTGATGGGTAACACAAAGCAAATGCGG
CAGGCAAAAACAGATTTGTTTACCTTCCTCTGGTTGAGAGTAAAAAATAT
GGGCAggcaaatttttgtcaaattgcGGAAAAGGTGTGTTCCTTGAGCTC
TAGGTCAGGctgttcataaaaaaaaatttagctCCCGTGACCTGGCCGAC
TTTGATTCGTGATCAAAATTTGGAGTCTGAAAGCACTTTTCAAGCATGCT
GGAATTTCAAGtgccattttgaaaacaaaaattaatcaGAATCCGATTTT
CAGATATTTCTCGATTGTTCTTCATTGTTAGATTGTTAGGACCAAATGGA
AGTTTCTAAATGAATCACAGGAAAATTCAACAGCATGAAATGAGGCTGGG
GAACCGATAATTAGTGAATTTTTGTTTACTCTACACAAGAGTATAATTTA
CGAATATTGAGTGGAAAATCTTAGTTTTGAAGGAAAGCAACACagagtta
tttcaatttttaaacaaatggcACAAGCTTTGACCTCCTCCCTCCTTAGT
GGCCATATActgcttaaaaatttaaaaatctaatgTCAATGGCCTCTTGT
ACAACACAGAGTTCCAAAAAAATTGTTATTCAATTTTATTCAGCTTAGGT
GTCTCactgcattttttattttcatattataGGAAATCAAAATCTATTTA
TAAATGGAACTGCAAAATCTATTTATAAAtggaacttcaaaataaaattt
cattccaACCTAAAATACCTGATCATGCAGGATCATGAAAGATTATTACA
CAATATATTTCTATAAAGTTTCTATAAATGGAAGATAAATAgtactgtga
aaaaaattatataatatgaaaaatattgttttgaaaaaaagaaaggtGAT
ATCCTTGTTTCCTCAAGATGTTCAGTCTCATAGGGGTTAGTTATTCAATA
GTTTTTTGGGGAAAGTTGGCAAAGCAGAACAAAATATTCCTGTAGGAAAA
AAgattattaaaaaatgttaattttactttttaactTCATTCATTTCGgc
tttcgtttttctttttcgtGCGTCTGGTCTTAGAGCAGCCAATTTTGGAT
AGACATCCAGATAGTGTTGATCTAACATTGACTTGAGTCTTTTTGTTGGT
ACTGTCATTGATTGGTATTTCTTTTTAAGATTATTAAACACAGCATGTAG
GCTTTCTGCTCCCTGCTCACCATACATGCCAAATGAAAGCTTCCATCGCC
TTAAAAACTTGCACGAGTGGTCTTCCAATAGATGTAACTTGGGTGTTATG
GATTCCTTTGGCCACGTAGATCGAAAATATGCCATCAAACAATCAATATC
ATCTCCTGTAAAAAAGAAACAATGGacacttttcaaaaagaaacaaaatg
aagAAGTTTTGGAAGTTAATTAAGTGAATATAGCTCAAATCCCAGCATAT
CCCTAAGAAACTTTGAACTTGATCCAAAAAACACTAACCACTCCAGCTGC
TTATTAGTTAAAAGTTATGCAACCTAATTTTGAGTAAATTTGTCCTGCTG
TAAGAAGACAGATAGTTTAACTGGTCTCAGTATAGCTCTCCTAGGGAACT
AggttaatatttttgaattaaaaatagGATAAATGTTCCATTCTAATTAC
CTTAATGAATTACTCTAGGATGGAAATTCTTACTTAATTCGTTAATTTCT
TGGTTTGTTACTCTTTCAGCTTTGTTGATGACCTGGTGACATTTGGCATA
CATTATGAATAATTTCTTGAACTTTTTGCCAACTTCAGCTGCTTCAAGAT
GTATTTCGGTTCCGTAAAATCCCAAAAGACACACTATCACCGGAACGTAA
TGGCACAGTTCTGTTAGTTGTCGGAGCTAAGAAAGGTAAGAAATAAACTT
TGCCAAAGAGTTATGTTAtgaattcaaaatgaaaaacaacaagTTTTTCT
AAAAGCAGAAGCTTCAGGATTTATTTAATCATTTTCAATGCTAAAATTTC
TTGcactctttaaaaaaacttgTTGTTTGtcattttgaattcaaaacaTA
AGATATAAAAGTTAATACTTTTTAATTTGAGTTACTTATTACTTATTACC
CAAAACacaattattaaaaatttattaagACCTTATGAGACATCTGGGGA
AAAGTACCTGTAGCATTTTGTGTACATGATTTCCAATAAAGCACTTGGAA
TGATAGGCTTGTCGCTCAACATGGAACTTCTGAAGAACCCAATCAAGTCC
TTTGGTAACTGGTCCTACTTCTTCAATATTGTTCTCTTTCAAAAGCTTTG
CAATTTCcttttgctgaaaataagaGAAACGATTGTTAagtcttttattt
ttgtctCATCTACAGGCTGGAAGCAAACATAATAGCATAATGAAGCATAA
TGAAACTTTAAATAGTAGATGTGGAAACCTTTAATTGAGTAAGTGTAcct
tttctattatttttccaTGGAAGAGATCTATTCTTGGTTTGTAAGCTGCA
GTGATTAAGTTTTCGTTTGAATCTTCCTTTGCTAGTTCAATAGCCATCCC
CTCTTCAGCCAGTTCAATAAGCTCCTCGAATCTTCGTACTTGTCTCTCAA
GTTCAATGATACGGTTGAATACTTGAAGAATCGCTTGATCTGTTGAGCTT
TTGGCAATGATTTTGAAATCCAACAATCGACAGTGGTATTCAAGAAGATT
GAAAAACTTGAGATAAACACCAAGTGATATGTGAAGTGCTGGTAGTGATA
CCTTCaaggaaaaatttaatttttgaataaaatcaataaacaattttaaa
agtacCTGTAAGAATTTTGGAGATGCATTTTATCATGGGAGATTAAAATT
TGCCTAAAAACTTTGCTGACTGACACAAATGTACTTTAAGTTTTCTCTAC
CTGTGAGAGAGGGACGTCAAAAAGTCTTTCGTTTATTACATTGTGACAAA
ACATAGCTTTCTTTGTTTCTGACTTGTATTCCTCTTTAAATCTCTTCAGG
TCTCTGTCCATGGATTCAAGTGTTCGTTCCTCCTTAAAACCTCTGTCACC
AAGTGGGATCTTCAATTCATCATTGGTTATGAGGCAGAAGAGACAAGGGT
ATTTTCCTGGAAACGAAAAAGGTAAGTTTTGTTGATTTGTTACAGTGATA
AAATGATGTCTTCTGGAAATATGTTGAgcgaatttttaattttgtgaaaC
TAGTGAAACCTAGTTTCACCTGGTAAACTGAGTATTCTATGAAAAATCTT
ACCATTTGCCCCAGTGAGTCCATAAACCATTGTCAGATACTCGTAGTCAC
CAGTGACAAAGACTCTAATCTTCTTTTCACTTAAAGAGAACAAAATAATA
CTTTAAAAACCCTCacaattaaacaaaaaacgagAGGAGGGTTCCACTGT
AACAGTTAACTgttattttttagttttaaaaaagtTGTTGATCCCAGTGA
AACTCCCAAGCAGCTTTAGTCTTAAAGGGAATTGTTCTGCATTTCAAAAC
TAATATCTACATAAATTCAACTAAAGGTTTTCTCTTAAAAGCAACTCAAA
CCATTGACTAAAGTGTATAACTTCAAAAATATGCATCTTGAAATGACACA
TGATGtaaaacgtttttttcttaCTTCCATTTGGTTTTCTGTAGTTGATT
GACTTGAAGTCCGAACCGTTCCATTCCAGTTCGTAGATTGGTTCTCAAGT
CTTTAGCCTCAAACATTGAAAATATCACTGTgttgtctttgttgtttggg
TGTTTTCGGTTAATGACTTGATAACACGCTTTGAAACTCTTGCCTCCGTG
ATCACCACCTATTTTCACGTGTAGCTCGTCATTTAGCTCTGGGTAGTTCA
CCAATAGGCCATTACTAATAGAAAAAGGGGGAAAAGATTTTGAATCCAGA
TTTCCTCTCGCATCTGAGAGGCTTGTACTGGTTTCTAAAAATGATTAATC
TTTCACTCAACATTCTAGTTCTAGATTGAGAAATAACATTAGAAAAGCTG
GTGCTGAAAGTATTATAATTACGTAAAATGTATTTTGACTACTAGCCTGT
CAATTGTCCGGACATAATCAATTACATGATTGGTCAAATCGTTCACGTAT
CCCCAAGGTGCAGACAACAATTCGAAAactccttttttgtttttgacagG
AAACAAGAATGGGGCTTGCTCGACCGTGTAGTCTTCGCCACGCCACAATT
GAGCAACCAAACGTTGTTTGCCTTGGGATGCCATGACAATGTTTGCTGCC
TTCAACCATctacaaagaaagaaaatggcTTGTCAATGATTTGAACCTGG
ATATAATCAGACAATGAAGATACAAGTTATCAGACATTTTGGTCCAGCTG
CTTGCTAATAATATCGATATANTCAATGATGTGAACCTGGATATAATCAG
ACAATGAAGATACAAGTTATCAGACATTTTGGTCCAGCTGCTTGCTAATA
ATATCGATATATAGACTATGTATATAGACTATTCTCACCTTGCCATGATT
TTAATCTTCTCCCAGGGAAGGCATAGGTCAGATTTCATGGCAACAACAAC
CTCTGCGTCCAAACACGCCACACAAATATTTCCTTTCTTGAGGATCTCGA
GTCTATCTTCTTCACTGAACGTTTTCAGTATATGCCCCATTTGCGAAAGA
ATTGAATTCGAACCAGAACCAGAGACGTAGTCAATTTGACTTTTCAGAAA
TTGCGATCTCGCTTGAACAGTCCTTTTTGAGGCCGAATCTGTGTCTTTGA
TAGGTTGGGGTGTTGGCGTCATAACCAATGGCTAAGAAATAATTAAGGAA
TCTGAATGTAAATAGAgctattatatttttgtaaaataacaGACAATTTC
TGACCTGAATAGAGTTGTTTTTAGAATTTACTTTAAGTATGACAGTGCTT
TATTGATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035472XLOC_035472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056307-exon-scaffold_272-1491911889:84566..84795TCONS_00056307-exon-scaffold_272-1491911889:84566..84795Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1510915933:84566..84795TCONS_00056307-exon-scaffold_272-1510915933:84566..84795Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1575043694:84566..84795TCONS_00056307-exon-scaffold_272-1575043694:84566..84795Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1491911889:87604..87700TCONS_00056307-exon-scaffold_272-1491911889:87604..87700Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1510915933:87604..87700TCONS_00056307-exon-scaffold_272-1510915933:87604..87700Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1575043694:87604..87700TCONS_00056307-exon-scaffold_272-1575043694:87604..87700Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1491911889:88181..88253TCONS_00056307-exon-scaffold_272-1491911889:88181..88253Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1510915933:88181..88253TCONS_00056307-exon-scaffold_272-1510915933:88181..88253Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1575043694:88181..88253TCONS_00056307-exon-scaffold_272-1575043694:88181..88253Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1491911889:88815..88936TCONS_00056307-exon-scaffold_272-1491911889:88815..88936Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1510915933:88815..88936TCONS_00056307-exon-scaffold_272-1510915933:88815..88936Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1575043694:88815..88936TCONS_00056307-exon-scaffold_272-1575043694:88815..88936Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1491911889:89965..90725TCONS_00056307-exon-scaffold_272-1491911889:89965..90725Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1510915933:89965..90725TCONS_00056307-exon-scaffold_272-1510915933:89965..90725Clytia hemisphaericaexon
TCONS_00056307-exon-scaffold_272-1575043694:89965..90725TCONS_00056307-exon-scaffold_272-1575043694:89965..90725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:84566..90725 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0990998	0.0644253	0.037402	0.073184	0.182196	0	0.0864529	0	0.0302468	0.0381339	0	0.0497706	0.116796	0.0998402	0.0562722	0.120777	0	0	0	0	0	0	0.151501	0.137737	0.107163	0.0962271	0	0	0.0366644	0.336197
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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