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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056304 ID=TCONS_00056304|Name=TCONS_00056304|organism=Clytia hemisphaerica|type=transcript|length=2438bpRun BLAST on NCBI protein sequence of TCONS_00056304-protein >TCONS_00056304-protein ID=TCONS_00056304-protein|Name=TCONS_00056304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp MKESITQGLKSLQYDKLGSLKVKEMLKSADLDSDFIQLVCWLVDKLKSLVRun BLAST on NCBI transcript from alignment at scaffold_272:25037..41076+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056304 ID=TCONS_00056304|Name=TCONS_00056304|organism=Clytia hemisphaerica|type=transcript|length=16040bp|location=Sequence derived from alignment at scaffold_272:25037..41076+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_272:25037..41076+ >TCONS_00056304 ID=TCONS_00056304|Name=TCONS_00056304|organism=Clytia hemisphaerica|type=CDS|length=16968bp|location=Sequence derived from alignment at scaffold_272:25037..41076+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056304 vs. Swiss-Prot (Human)
Match: FA98A (Protein FAM98A OS=Homo sapiens GN=FAM98A PE=1 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 7.664e-52 Identity = 115/307 (37.46%), Postives = 173/307 (56.35%), Query Frame = 3
Query: 183 EIMKESITQGLKSLQYDK--LGSLKVKEMLKSADLDSDFIQLVCWLVDKLKSLV----DVDIANISGEADTFCLELIGILRDLACPYASIIGG---KGLQTEKGKMFTLDYLISELQAARMCSSMNDDDSKMDVDSGSAVSIPIANIMQTLNVPMS-SNNNVNTLFNDINQK-LQERLKTLPVDHLQEPLLKKSLSEEQWSKVSQINDAMCQDYKQRREVLIKRVDVTVQSFCWSEKLKSTPEQVATAFQPIRQQLHADSITSTADILATRTDLYPVEKTSSGASREATKCDLNKIIIPKVPDRGGR 1070
++M+ I + L+ L Y L + + + + +F +L WLV +L+ L +V N EA+ F LE+ G+L ++ CPY S+ G K L +K + L YLISEL+AARM +N K GS V + I L + +N + F+ I +K L+E L +P +H+ +PLLKK + W K+ IN A+ +Y+ RR++LIKR+DVTVQSF WS++ KS E++A +QP R L + S A +LA R DL + +TSSG+ RE T C +NK+++ +VPDRGGR
Sbjct: 4 DLMETDILESLEDLGYKGPLLEDGALSQAVSAGASSPEFTKLCAWLVSELRVLCKLEENVQATNSPSEAEEFQLEVSGLLGEMNCPYLSLTSGDVTKRLLIQKNCLLLLTYLISELEAARMLC-VNAPPKKAQEGGGSEVFQELKGICIALGMSKPPANITMFQFFSGIEKKKLKETLAKVPPNHVGKPLLKKPMGPAHWEKIEAINQAIANEYEVRRKLLIKRLDVTVQSFGWSDRAKSQTEKLAKVYQPKRSVLSPKTTISVAHLLAARQDLSKILRTSSGSIREKTACAINKVLMGRVPDRGGR 309 The following BLAST results are available for this feature:
BLAST of TCONS_00056304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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