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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056299 ID=TCONS_00056299|Name=TCONS_00056299|organism=Clytia hemisphaerica|type=transcript|length=311bp
NCCAAATGATGTCATTGAAAAACAGAATGAGTCGATTAATTCTGACCACG
ATACTACTGTCGATAATGAGAGTTCCGAGGAAAATAGGACTTGCTCTGAT
AGTTGCGATGAGGAAAATGAAACTCACGAATCATCAGATACAATAACAAA
AGGATTGCTATGTGGCCAAGAAAAGAGTGATGAAAATCATGAGCAACCCA
CCAGTCTTTATGAAGTCAATCATGGTGACGATGAGAAAGAATTCGGTGGA
GAAGGTAgttatgaatttctttataacacccctgtgtcacagacccgctg
ggaccttAGGT Run BLAST on NCBI transcript from alignment at scaffold_272:1036..2380+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056299 ID=TCONS_00056299|Name=TCONS_00056299|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at scaffold_272:1036..2380+ (Clytia hemisphaerica)
NCCAAATGATGTCATTGAAAAACAGGTATAGTATTATTTCATCGCCAATA
TCGTTTTACAAAGTTTTCACAAGGCTTATTTGATCTGAGCTTTTTACCGC
CGAATCTCTACTCTATTTCGATAAGGGACCACAATATTGATAGAATTCTC
AGATTCCCTTAGGAATAATGGAGGTTCAAAATAATGGAATAGAAGCATTA
TTTTTGGGGCCTTTTGGAAGAAAATGATTTACATTGGTTACATTGGTAAA
ACAATTTCGAATCCTTTTAATCCTTCGTTCCCCATTTTTTAAAAGGGAAT
GTACACTATTTGTAAAGAGAGGTCATAGAGCGTACACTTTCTTTAtgata
aaatgttttttccacAGTTTCTTTTTTATCCCGAAATTACAAGTCATTAA
CAGTCAAAACGTAAGGTAGAATTATCCCACCTTAAAATTACACAGATTAT
GGTTATTATTataatcaaagaaaataatatgTAGCTACTTTAAGCTGTCT
CCGAAAATATAACCTGATCGGATTATTtggataccttatcggggaaaaaa
atgtcgaagttttatttagtcgttttttttttcgtcggggaaaaatttcg
tcacctagaggcattttcgtcattttcccccgaccaaaagtTCAAACTCG
TCACTTTTCCCCCTACGAAATTTACAAttcagtcactttcacccaactaa
attgtccaaatgaaatggtttccttcactagcttgaaaaaaatcttgtaa
ttcgacgtttaaagcactaatttcggttaataaaggtgtaaaaatttagg
ttttaattttggtcggggtttaaaaaatcgcggtaaaagttttggtcggg
gataaaaaaattgggtaaagGTTTTGGTcaggtgataaaatatcggggaa
aaaattcgtcggggggaaatttcgtcaccccctcaaaattttcgttactt
tcccccgacatttttttcccgataaggttaatttaaaagaaaaaaaataa
atctcgTTCTTCGAATGGAAAACCTTGTAAGTTTTGAACTCTCTTGTATT
ATTTTTCAGAATGAGTCGATTAATTCTGACCACGATACTACTGTCGATAA
TGAGAGTTCCGAGGAAAATAGGACTTGCTCTGATAGTTGCGATGAGGAAA
ATGAAACTCACGAATCATCAGATACAATAACAAAAGGATTGCTATGTGGC
CAAGAAAAGAGTGATGAAAATCATGAGCAACCCACCAGTCTTTATGAAGT
CAATCATGGTGACGATGAGAAAGAATTCGGTGGAGAAGGTAgttatgaat
ttctttataacacccctgtgtcacagacccgctgggaccttAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056299-exon-scaffold_272-1491911889:1036..1060 | TCONS_00056299-exon-scaffold_272-1491911889:1036..1060 | Clytia hemisphaerica | exon |
| TCONS_00056299-exon-scaffold_272-1510915933:1036..1060 | TCONS_00056299-exon-scaffold_272-1510915933:1036..1060 | Clytia hemisphaerica | exon |
| TCONS_00056299-exon-scaffold_272-1575043694:1036..1060 | TCONS_00056299-exon-scaffold_272-1575043694:1036..1060 | Clytia hemisphaerica | exon |
| TCONS_00056299-exon-scaffold_272-1491911889:2095..2380 | TCONS_00056299-exon-scaffold_272-1491911889:2095..2380 | Clytia hemisphaerica | exon |
| TCONS_00056299-exon-scaffold_272-1510915933:2095..2380 | TCONS_00056299-exon-scaffold_272-1510915933:2095..2380 | Clytia hemisphaerica | exon |
| TCONS_00056299-exon-scaffold_272-1575043694:2095..2380 | TCONS_00056299-exon-scaffold_272-1575043694:2095..2380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:1036..2380 + |
Blast
The following BLAST results are available for this feature:
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